Col14a1 (collagen, type XIV, alpha 1) - Rat Genome Database

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Gene: Col14a1 (collagen, type XIV, alpha 1) Mus musculus
Analyze
Symbol: Col14a1
Name: collagen, type XIV, alpha 1
RGD ID: 1552297
MGI Page MGI
Description: Predicted to be an extracellular matrix structural constituent conferring tensile strength. Acts upstream of or within several processes, including collagen fibril organization; regulation of cell growth involved in cardiac muscle cell development; and ventricular cardiac muscle tissue development. Located in interstitial matrix. Is expressed in several structures, including cranium; genitourinary system; gut; heart and pericardium; and skeletal musculature. Human ortholog(s) of this gene implicated in esophagus squamous cell carcinoma. Orthologous to human COL14A1 (collagen type XIV alpha 1 chain).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 5730412L22Rik; AW108078; collagen alpha-1(XIV) chain; procollagen, type XIV, alpha 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391555,171,040 - 55,384,199 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1555,171,146 - 55,384,199 (+)EnsemblGRCm39 Ensembl
GRCm381555,307,644 - 55,520,803 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1555,307,750 - 55,520,803 (+)EnsemblGRCm38mm10GRCm38
MGSCv371555,139,305 - 55,352,358 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361555,137,834 - 55,350,884 (+)NCBIMGSCv36mm8
Celera1556,848,017 - 57,052,928 (+)NCBICelera
Cytogenetic Map15D1NCBI
cM Map1521.96NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
1,2-dichloroethane  (EXP)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-butoxyethanol  (EXP)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxyphenyl retinamide  (EXP)
4-nonylphenol  (ISO)
4-tert-Octylphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-azacytidine  (ISO)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (ISO)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzatropine  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (EXP)
Benzo[k]fluoranthene  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
bleomycin A2  (EXP)
buspirone  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
Cuprizon  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dextran sulfate  (EXP)
diarsenic trioxide  (ISO)
dimethylarsinic acid  (ISO)
dioxygen  (EXP,ISO)
diquat  (EXP)
diuron  (ISO)
dorsomorphin  (ISO)
elemental selenium  (ISO)
endosulfan  (ISO)
entinostat  (ISO)
ethanol  (EXP,ISO)
flutamide  (ISO)
folic acid  (ISO)
fonofos  (ISO)
furan  (ISO)
genistein  (EXP)
gentamycin  (ISO)
glyphosate  (EXP)
indole-3-methanol  (ISO)
inulin  (EXP)
isotretinoin  (ISO)
maneb  (EXP)
methoxychlor  (ISO)
methylmercury chloride  (ISO)
nefazodone  (ISO)
nickel atom  (ISO)
nimesulide  (ISO)
oxaliplatin  (ISO)
ozone  (EXP)
p-tert-Amylphenol  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
paraquat  (EXP,ISO)
parathion  (ISO)
pentane-2,3-dione  (ISO)
perfluorohexanesulfonic acid  (EXP)
perfluorononanoic acid  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (EXP,ISO)
potassium dichromate  (ISO)
progesterone  (ISO)
rofecoxib  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (EXP,ISO)
sodium arsenite  (EXP,ISO)
sodium fluoride  (EXP)
succimer  (EXP)
sunitinib  (ISO)
terbufos  (ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (EXP)
titanium dioxide  (EXP)
topotecan  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
triphenyl phosphate  (ISO)
triptonide  (EXP)
troglitazone  (EXP)
trovafloxacin  (EXP)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Identification of a DNA methylome profile of esophageal squamous cell carcinoma and potential plasma epigenetic biomarkers for early diagnosis. Li X, etal., PLoS One. 2014 Jul 22;9(7):e103162. doi: 10.1371/journal.pone.0103162. eCollection 2014.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7493021   PMID:10349636   PMID:10393435   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12853031   PMID:14610273   PMID:15065570   PMID:16129687   PMID:16141072  
PMID:16141073   PMID:17520166   PMID:18287559   PMID:18554416   PMID:18612084   PMID:18802027   PMID:18816857   PMID:19136672   PMID:19334288   PMID:19864314   PMID:21173153   PMID:21267068  
PMID:21677750   PMID:21873635   PMID:22159717   PMID:22906538   PMID:23516636   PMID:23599329   PMID:24006456   PMID:24194600   PMID:24952961   PMID:25344368   PMID:27527664   PMID:27626380  
PMID:28071719   PMID:28327634   PMID:28824450   PMID:29084951   PMID:30149392   PMID:30335684   PMID:31624071   PMID:31669249   PMID:32325033   PMID:33580754   PMID:34003106   PMID:34248495  
PMID:34560063   PMID:35830813   PMID:35831953  


Genomics

Comparative Map Data
Col14a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391555,171,040 - 55,384,199 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1555,171,146 - 55,384,199 (+)EnsemblGRCm39 Ensembl
GRCm381555,307,644 - 55,520,803 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1555,307,750 - 55,520,803 (+)EnsemblGRCm38mm10GRCm38
MGSCv371555,139,305 - 55,352,358 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361555,137,834 - 55,350,884 (+)NCBIMGSCv36mm8
Celera1556,848,017 - 57,052,928 (+)NCBICelera
Cytogenetic Map15D1NCBI
cM Map1521.96NCBI
COL14A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388120,124,454 - 120,373,573 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8120,059,780 - 120,373,573 (+)EnsemblGRCh38hg38GRCh38
GRCh378121,137,341 - 121,385,812 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368121,206,533 - 121,453,454 (+)NCBINCBI36Build 36hg18NCBI36
Celera8117,326,467 - 117,573,360 (+)NCBICelera
Cytogenetic Map8q24.12NCBI
HuRef8116,457,995 - 116,704,917 (+)NCBIHuRef
CHM1_18121,177,769 - 121,424,764 (+)NCBICHM1_1
T2T-CHM13v2.08121,253,115 - 121,502,333 (+)NCBIT2T-CHM13v2.0
Col14a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8788,611,827 - 88,826,939 (+)NCBIGRCr8
mRatBN7.2786,722,093 - 86,937,215 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl786,722,094 - 86,937,214 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx788,603,806 - 88,818,960 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0790,805,004 - 91,020,168 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0790,610,464 - 90,825,601 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0795,054,877 - 95,274,073 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl795,074,236 - 95,273,298 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0795,678,302 - 95,896,126 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4791,801,534 - 92,032,966 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1791,835,769 - 92,067,196 (+)NCBI
Celera783,515,260 - 83,730,170 (+)NCBICelera
Cytogenetic Map7q32NCBI
Col14a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541725,579,547 - 25,774,127 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541725,579,547 - 25,774,067 (+)NCBIChiLan1.0ChiLan1.0
COL14A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27137,553,479 - 137,799,154 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18113,065,502 - 113,312,629 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08116,818,467 - 117,065,385 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18119,588,512 - 119,834,226 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8119,610,929 - 119,831,880 (+)Ensemblpanpan1.1panPan2
COL14A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11319,033,423 - 19,249,189 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1319,011,897 - 19,248,568 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1319,046,227 - 19,261,948 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01319,362,705 - 19,578,555 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1319,363,930 - 19,578,545 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11319,089,930 - 19,305,655 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01319,189,397 - 19,405,255 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01319,420,220 - 19,638,341 (+)NCBIUU_Cfam_GSD_1.0
Col14a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530319,013,239 - 19,216,888 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647026,440,615 - 26,643,015 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647026,440,606 - 26,643,015 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COL14A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl418,690,198 - 18,924,971 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1418,690,197 - 18,925,111 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2419,715,672 - 19,949,740 (-)NCBISscrofa10.2Sscrofa10.2susScr3
COL14A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18114,701,662 - 114,946,216 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8114,701,664 - 114,887,483 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603925,334,593 - 25,585,541 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Col14a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476317,982,646 - 18,172,904 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476317,982,646 - 18,172,742 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Col14a1
9215 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:908
Count of miRNA genes:316
Interacting mature miRNAs:368
Transcripts:ENSMUST00000023053, ENSMUST00000110217, ENSMUST00000110221, ENSMUST00000125416
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10401902Sicd2_mseizure-induced cell death 2 (mouse)Not determined15347438971197538Mouse
4141952W3q7_mweight 3 weeks QTL 7 (mouse)Not determined348969478601286Mouse
4142252Tailaq4_mtail length adjusted QTL 4 (mouse)Not determined348969478601286Mouse
4142448Tailq6_mtail length QTL 6 (mouse)Not determined348969478601286Mouse
1357559Scfq2_msubcutaneous fat pad weight QTL 2 (mouse)Not determined15348969478601286Mouse
1357659Epfpq4_mepididymal fat percentage QTL 4 (mouse)Not determined15348969478601286Mouse
26884387Skwq8_mskull length QTL 8, 10 week (mouse)15612948168271849Mouse
26884412Bzwq10_mbi-zygomatic width QTL 10, 10 week (mouse)15612948171471849Mouse
26884417Bzwq4_mbi-zygomatic width QTL 4, 5 week (mouse)15612948172471849Mouse
27226786Feml11_mfemur length 11, 5 week (mouse)15612948175871849Mouse
27095932Ulnl11_mulna length 11, 16 week (mouse)15612948176384200Mouse
27226717Tibw4_mtibia width 4, proximal, 10 week (mouse)15612948178684200Mouse
27226734Tibmd5_mtibia midshaft diameter 5, 10 week (mouse)15612948186684201Mouse
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse
27226721Tibw8_mtibia width 8, proximal, 16 week (mouse)15692948175871849Mouse
27226773Tibl16_mtibia length 16, 10 week (mouse)15692948175871849Mouse
27226777Tibl8_mtibia length 8, 5 week (mouse)15692948184584201Mouse
27095940Ulnl8_mulna length 8, 10 week (mouse)15722948155263396Mouse
27226759Feml17_mfemur length 17, 10 week (mouse)15762948155263396Mouse
27226755Feml22_mfemur length 22, 16 week (mouse)15762948159271849Mouse
4141192Ssrq2_mstress response QTL 2 (mouse)Not determined927302256186850Mouse
1301433Rapop5_mradiation-induced apoptosis 5 (mouse)Not determined15927302279474762Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
14928313Manh78_mmandible shape 78 (mouse)152148464155484641Mouse
12859289Criq3_mCitrobacter rodentium infection QTL 3 (mouse)152259376556593765Mouse
4142160Femwf10_mfemur work to failure 10 (mouse)Not determined2289301456893160Mouse
1301557Bbaa22_mB.burgdorferi-associated arthritis 22 (mouse)Not determined152446257258462805Mouse
1300967Bdt6_mbone density traits 6 (mouse)Not determined152529580659295928Mouse
4141409Radsvq1_mradiation sensitivity QTL 1 (mouse)Not determined2548497859484978Mouse
1300772Bglq16_mbody growth late QTL 16 (mouse)Not determined152631178060311880Mouse
1301345Bgeq14_mbody growth early QTL 14 (mouse)Not determined152631178060311880Mouse
1357514Mbis3_mMycobacterium bovis-induced systemic lupus erythematosus 3 (mouse)Not determined162631178060311880Mouse
1301406Egrd2_mearly growth rate (mouse)Not determined152631178060311880Mouse
27226800Scvln20_msacral vertebrae length 2, 16 week (mouse)152660008666371849Mouse
1301450Bpq6_mblood pressure QTL 6 (mouse)Not determined152828264662282739Mouse
1357512Bsbob5_mBSB obesity 5 (mouse)Not determined152828264662282739Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800146102008435Mouse
26884392Humsd8_mhumerus midshaft diameter 8, 16 week (mouse)152930014676084200Mouse
26884452Sklq17_mskull length QTL 17, 16 week (mouse)153020014657963396Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578416103425899Mouse
1300578Cd8ts3_mCD8 T cell subset 3 (mouse)Not determined153400469468004804Mouse
1301324Cdif_mcolor difference (mouse)Not determined153597590669976019Mouse
27226729Tibmd2_mtibia midshaft diameter 2, 5 week (mouse)153800024486684201Mouse
1301580Hrq2_mheart rate quantitative locus 2 (mouse)Not determined153910039573100593Mouse
1300949Lore5_mloss of righting induced by ethanol 5 (mouse)Not determined154001944158022297Mouse
4142459Lfnq3_mlung function QTL 3 (mouse)Not determined4017702272372580Mouse
26884402Cvht9_mcranial vault height 9, 16 week (mouse)154216339695497881Mouse
1357703Vtbt17_mvertebral trabecular bone trait 17 (mouse)Not determined154455331378553437Mouse
1301568Tria2_mT-cell receptor induced activation 2 (mouse)Not determined154485914178859281Mouse
26884420Cvht6_mcranial vault height 6, 10 week (mouse)154556339669171849Mouse
1357756Alaa4_malopecia areata 4 (mouse)Not determined154638964680389845Mouse
10755515Amzn3_manatomical modifier of Zfp423 3 (mouse)154638964680389845Mouse
1301006Hfib1_mhepatic fibrogenesis 1 (mouse)Not determined154730633481306479Mouse
1301860Gct3_mgranulosa cell tumorigenesis 3 (mouse)Not determined154740959681409691Mouse
26884397Humsd5_mhumerus midshaft diameter 5, 10 week (mouse)154836339698397881Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548363396101708435Mouse
1301429Pcir3_mperiosteal circumference 3 (mouse)Not determined154846536282465496Mouse
1357661Eae2b_msusceptibility to experimental allergic encephalomyelitis 2b (mouse)Not determined155100469464944308Mouse
1301779Dpml_mdopamine loss (mouse)Not determined155100469476794493Mouse
4142198Hbtq_mhabituation QTL (mouse)Not determined155116070885160833Mouse
10045637Heal27_mwound healing/regeneration 29 (mouse)Not determined155141836185418511Mouse
10412067Pain2_mpain 2 (mouse)Not determined155164533985645626Mouse
1302080Szs13_mseizure susceptibility 13 (mouse)Not determined155168583285694449Mouse
1301708Cocrb14_mcocaine related behavior 14 (mouse)Not determined155180651585806651Mouse
38501067Tip3_mtuberculosis immunophenotype 3, IFN-g level (mouse)155356339689584203Mouse
13504731Cath5_mcarotid atherosclerosis 5 (mouse)155478912988789129Mouse

Markers in Region
17.MMHAP59FLF2.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381555,351,692 - 55,351,863UniSTSGRCm38
MGSCv371555,183,247 - 55,183,418UniSTSGRCm37
Celera1556,890,807 - 56,890,978UniSTS
Cytogenetic Map15DUniSTS
Whitehead_YAC15 UniSTS
AJ131395  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381555,520,636 - 55,520,721UniSTSGRCm38
MGSCv371555,352,191 - 55,352,276UniSTSGRCm37
Celera1557,052,761 - 57,052,846UniSTS
Cytogenetic Map15DUniSTS
Whitehead/MRC_RH15497.39UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001368422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_181277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006520385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC131337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC133156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ131395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK009906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK017553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK136987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW259216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY221110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC138345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF582947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LXEJ02004729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000023053   ⟹   ENSMUSP00000023053
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1555,171,146 - 55,384,199 (+)Ensembl
GRCm38.p6 Ensembl1555,307,750 - 55,520,803 (+)Ensembl
RefSeq Acc Id: ENSMUST00000110217   ⟹   ENSMUSP00000105846
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1555,171,147 - 55,384,197 (+)Ensembl
GRCm38.p6 Ensembl1555,307,751 - 55,520,801 (+)Ensembl
RefSeq Acc Id: ENSMUST00000110221   ⟹   ENSMUSP00000105850
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1555,171,315 - 55,383,599 (+)Ensembl
GRCm38.p6 Ensembl1555,307,919 - 55,520,203 (+)Ensembl
RefSeq Acc Id: ENSMUST00000125416   ⟹   ENSMUSP00000122455
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1555,312,222 - 55,383,085 (+)Ensembl
GRCm38.p6 Ensembl1555,448,826 - 55,519,689 (+)Ensembl
RefSeq Acc Id: NM_001368422   ⟹   NP_001355351
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391555,171,147 - 55,384,199 (+)NCBI
GRCm381555,307,751 - 55,520,803 (+)NCBI
Sequence:
RefSeq Acc Id: NM_181277   ⟹   NP_851794
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391555,171,147 - 55,384,199 (+)NCBI
GRCm381555,307,751 - 55,520,803 (+)NCBI
MGSCv371555,139,305 - 55,352,358 (+)RGD
Celera1556,848,017 - 57,052,928 (+)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006520385   ⟹   XP_006520448
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391555,171,040 - 55,383,085 (+)NCBI
GRCm381555,307,644 - 55,519,689 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036159113   ⟹   XP_036015006
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391555,171,040 - 55,383,085 (+)NCBI
Sequence:
RefSeq Acc Id: NP_851794   ⟸   NM_181277
- Peptide Label: isoform 2 precursor
- UniProtKB: B7ZNH7 (UniProtKB/TrEMBL),   K3W4R4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006520448   ⟸   XM_006520385
- Peptide Label: isoform X1
- UniProtKB: K3W4R4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001355351   ⟸   NM_001368422
- Peptide Label: isoform 1 precursor
- UniProtKB: Q8C6X3 (UniProtKB/Swiss-Prot),   Q80X19 (UniProtKB/Swiss-Prot),   Q3UVS2 (UniProtKB/Swiss-Prot),   Q9WV05 (UniProtKB/Swiss-Prot),   K3W4R4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000122455   ⟸   ENSMUST00000125416
RefSeq Acc Id: ENSMUSP00000105846   ⟸   ENSMUST00000110217
RefSeq Acc Id: ENSMUSP00000105850   ⟸   ENSMUST00000110221
RefSeq Acc Id: ENSMUSP00000023053   ⟸   ENSMUST00000023053
RefSeq Acc Id: XP_036015006   ⟸   XM_036159113
- Peptide Label: isoform X2
- UniProtKB: K3W4R4 (UniProtKB/TrEMBL)
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q80X19-F1-model_v2 AlphaFold Q80X19 1-1797 view protein structure

Promoters
RGD ID:8683754
Promoter ID:EPDNEW_M19907
Type:initiation region
Name:Col14a1_1
Description:Mus musculus collagen, type XIV, alpha 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381555,307,751 - 55,307,811EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1341272 AgrOrtholog
Ensembl Genes ENSMUSG00000022371 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000023053 ENTREZGENE
  ENSMUST00000023053.12 UniProtKB/Swiss-Prot
  ENSMUST00000110217.10 UniProtKB/TrEMBL
  ENSMUST00000110221 ENTREZGENE
  ENSMUST00000110221.10 UniProtKB/TrEMBL
  ENSMUST00000125416.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.200 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.410 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Collagen UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN3_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN3_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TSPN-like_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWF_A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  vWFA_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1341272 ENTREZGENE
NCBI Gene 12818 ENTREZGENE
PANTHER COLLAGEN ALPHA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  COLLAGEN ALPHA-1(XIV) CHAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Collagen UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  fn3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Col14a1 PhenoGen
PRINTS VWFADOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
  VWFA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART FN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TSPN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49265 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49899 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF53300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B7ZNH7 ENTREZGENE, UniProtKB/TrEMBL
  COEA1_MOUSE UniProtKB/Swiss-Prot
  F7D5Y4_MOUSE UniProtKB/TrEMBL
  K3W4R4 ENTREZGENE, UniProtKB/TrEMBL
  Q3UVS2 ENTREZGENE
  Q80X19 ENTREZGENE
  Q8C6X3 ENTREZGENE
  Q9WV05 ENTREZGENE
UniProt Secondary Q3UVS2 UniProtKB/Swiss-Prot
  Q8C6X3 UniProtKB/Swiss-Prot
  Q9WV05 UniProtKB/Swiss-Prot