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ONTOLOGY REPORT - ANNOTATIONS


Term:extracellular matrix assembly
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Accession:GO:0085029 term browser browse the term
Definition:The aggregation, arrangement and bonding together of the extracellular matrix.


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extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col1a2 collagen, type I, alpha 2 acts_upstream_of_or_within IMP (MGI:5468210|PMID:22910579) MGI PMID:22910579 MGI:5468210 NCBI chr 6:4,505,618...4,541,543
Ensembl chr 6:4,504,814...4,541,544
JBrowse link
G Fkbp10 FK506 binding protein 10 acts_upstream_of_or_within IMP (MGI:6094666|PMID:28774593) MGI PMID:28774593 MGI:6094666 NCBI chr11:100,415,694...100,424,840
Ensembl chr11:100,415,697...100,424,824
JBrowse link
G Gas6 growth arrest specific 6 involved_in ISO PMID:18374201 UniProt PMID:18374201 RGD:8554638 NCBI chr 8:13,465,374...13,494,535
Ensembl chr 8:13,465,374...13,494,490
JBrowse link
G Gpm6b glycoprotein m6b involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr  X:166,238,943...166,389,033
Ensembl chr  X:166,238,911...166,388,988
JBrowse link
G Hapln2 hyaluronan and proteoglycan link protein 2 acts_upstream_of_or_within IMP (MGI:4437139|PMID:20181608) MGI PMID:20181608 MGI:4437139 NCBI chr 3:88,020,558...88,027,511
Ensembl chr 3:88,021,750...88,027,583
JBrowse link
G Has1 hyaluronan synthase 1 involved_in IDA
IBA
(MGI:5508296|PMID:10455188)
(MGI:6201960|PMID:21873635)
UniProt
GO_Central
PMID:10455188 PMID:21873635 MGI:5508296 MGI:6201960 NCBI chr17:17,833,691...17,855,589
Ensembl chr17:17,843,323...17,855,205
JBrowse link
G Has2 hyaluronan synthase 2 involved_in IBA
IDA
(MGI:6201960|PMID:21873635)
(MGI:5508296|PMID:10455188)
GO_Central
UniProt
PMID:10455188 PMID:21873635 MGI:5508296 MGI:6201960 NCBI chr15:56,665,627...56,694,546
Ensembl chr15:56,665,627...56,694,539
JBrowse link
G Has3 hyaluronan synthase 3 involved_in IDA
IBA
(MGI:5508296|PMID:10455188)
(MGI:6201960|PMID:21873635)
UniProt
GO_Central
PMID:10455188 PMID:21873635 MGI:5508296 MGI:6201960 NCBI chr 8:106,870,242...106,882,902
Ensembl chr 8:106,870,242...106,884,566
JBrowse link
G Qsox1 quiescin Q6 sulfhydryl oxidase 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:155,778,155...155,812,899
Ensembl chr 1:155,776,029...155,812,889
JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3, neutral acts_upstream_of_or_within IMP (MGI:5468210|PMID:22910579) MGI PMID:22910579 MGI:5468210 NCBI chr 8:106,252,548...106,337,965
Ensembl chr 8:106,252,548...106,337,988
JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in ISO
IDA
(MGI:4820704|PMID:19734317) MGI
BHF-UCL
PMID:19734317 GO_REF:0000096 MGI:4820704 MGI:4834177 NCBI chr 7:25,687,002...25,705,077
Ensembl chr 7:25,687,002...25,705,077
JBrowse link
basement membrane assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lamb1 laminin B1 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr12:31,265,146...31,329,644
Ensembl chr12:31,265,234...31,329,644
JBrowse link
G Lamb2 laminin, beta 2 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 9:108,479,847...108,490,530
Ensembl chr 9:108,479,736...108,490,530
JBrowse link
G Lamb3 laminin, beta 3 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 1:193,294,353...193,343,878
Ensembl chr 1:193,207,699...193,343,878
JBrowse link
G Ntn4 netrin 4 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr10:93,641,049...93,745,972
Ensembl chr10:93,640,681...93,747,207
JBrowse link
G Ntng1 netrin G1 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 3:109,780,050...110,149,972
Ensembl chr 3:109,780,040...110,144,011
JBrowse link
G Ntng2 netrin G2 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 2:29,194,726...29,248,099
Ensembl chr 2:29,194,541...29,253,005
JBrowse link
G Plod3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 acts_upstream_of_or_within IMP (MGI:3618677|PMID:16467571) MGI PMID:16467571 MGI:3618677 NCBI chr 5:136,987,019...136,996,646
Ensembl chr 5:136,987,019...136,996,648
JBrowse link
G Ramp2 receptor (calcitonin) activity modifying protein 2 involved_in IMP (MGI:3772552|PMID:18097473) UniProt PMID:18097473 MGI:3772552 NCBI chr11:101,246,334...101,248,250
Ensembl chr11:101,246,028...101,259,546
JBrowse link
elastic fiber assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp7a ATPase, Cu++ transporting, alpha polypeptide acts_upstream_of_or_within IMP (MGI:54141|PMID:937819), (MGI:54357|PMID:20889), (MGI:63907|PMID:3385878)
(MGI:3616522|PMID:16338116)
MGI PMID:20889 PMID:937819 PMID:3385878 PMID:16338116 MGI:3616522 MGI:54141 MGI:54357 MGI:63907 NCBI chr  X:106,027,224...106,128,161
Ensembl chr  X:106,027,276...106,124,926
JBrowse link
G Efemp2 epidermal growth factor-containing fibulin-like extracellular matrix protein 2 involved_in
acts_upstream_of_or_within
ISO
IMP
(MGI:4397710|PMID:19855011)
(MGI:3619755|PMID:16478991), (MGI:4947512|PMID:20019329), (MGI:5660411|PMID:26178373), (MGI:6140729|PMID:28508064), (MGI:6158865|PMID:26711913)
MGI
UniProt
PMID:16478991 PMID:19855011 PMID:20019329 PMID:26178373 PMID:26711913 PMID:28508064 GO_REF:0000096 MGI:3619755 MGI:4397710 MGI:4834177 MGI:4947512 MGI:5660411 MGI:6140729 MGI:6158865 NCBI chr19:5,473,946...5,482,520
Ensembl chr19:5,473,954...5,482,517
JBrowse link
G Emilin1 elastin microfibril interfacer 1 involved_in IMP (MGI:5605894|PMID:25056700) BHF-UCL PMID:25056700 MGI:5605894 NCBI chr 5:30,913,387...30,921,279
Ensembl chr 5:30,913,402...30,921,277
JBrowse link
G Fbln5 fibulin 5 involved_in IMP
ISO
IBA
(MGI:2681470|PMID:11805835), (MGI:2681471|PMID:11805834)
(MGI:6201960|PMID:21873635)
BHF-UCL
MGI
GO_Central
PMID:11805834 PMID:11805835 PMID:21873635 GO_REF:0000096 MGI:2681470 MGI:2681471 MGI:4834177 MGI:6201960 NCBI chr12:101,746,565...101,819,119
Ensembl chr12:101,746,565...101,819,055
JBrowse link
G Lox lysyl oxidase acts_upstream_of_or_within IMP
ISO
(MGI:5616293|PMID:23413430)
(MGI:3604822|PMID:16192629), (MGI:3609311|PMID:12417550)
MGI
RGD
PMID:12417550 PMID:16192629 PMID:16432278 PMID:23413430 GO_REF:0000096 MGI:3604822 MGI:3609311 MGI:4417868 MGI:5616293 RGD:1600669 NCBI chr18:52,516,060...52,529,867
Ensembl chr18:52,516,067...52,529,867
JBrowse link
G Ltbp3 latent transforming growth factor beta binding protein 3 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr19:5,740,900...5,758,536
Ensembl chr19:5,740,904...5,758,532
JBrowse link
G Ltbp4 latent transforming growth factor beta binding protein 4 involved_in IMP (MGI:5638486|PMID:25713297) UniProt PMID:25713297 MGI:5638486 NCBI chr 7:27,305,140...27,339,720
Ensembl chr 7:27,305,136...27,337,692
JBrowse link
G Mfap4 microfibrillar-associated protein 4 involved_in IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr11:61,485,431...61,488,708
Ensembl chr11:61,485,431...61,488,900
JBrowse link
G Myh11 myosin, heavy polypeptide 11, smooth muscle involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr16:14,194,527...14,292,188
Ensembl chr16:14,194,535...14,291,372
JBrowse link
G Thsd4 thrombospondin, type I, domain containing 4 acts_upstream_of_or_within IDA (MGI:4453293|PMID:19940141) MGI PMID:19940141 MGI:4453293 NCBI chr 9:59,966,931...60,522,113
Ensembl chr 9:59,966,931...60,522,046
JBrowse link
G Tnxb tenascin XB involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr17:34,660,453...34,719,815
Ensembl chr17:34,660,457...34,719,815
JBrowse link
negative regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Antxr1 anthrax toxin receptor 1 acts_upstream_of_or_within IMP (MGI:5662198|PMID:25572963) MGI PMID:25572963 MGI:5662198 NCBI chr 6:87,133,853...87,335,809
Ensembl chr 6:87,133,853...87,335,821
JBrowse link
positive regulation of basement membrane assembly involved in embryonic body morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clasp1 CLIP associating protein 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:118,389,058...118,609,462
Ensembl chr 1:118,389,058...118,612,678
JBrowse link
G Clasp2 CLIP associating protein 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:113,740,077...113,919,697
Ensembl chr 9:113,741,473...113,919,682
JBrowse link
G Dag1 dystroglycan 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:108,204,861...108,263,977
Ensembl chr 9:108,204,634...108,263,958
JBrowse link
G Phldb1 pleckstrin homology like domain, family B, member 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:44,686,308...44,735,248
Ensembl chr 9:44,686,304...44,735,198
JBrowse link
G Phldb2 pleckstrin homology like domain, family B, member 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr16:45,746,230...45,953,598
Ensembl chr16:45,746,243...45,953,598
JBrowse link
positive regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Emilin1 elastin microfibril interfacer 1 involved_in IMP (MGI:5605894|PMID:25056700) BHF-UCL PMID:25056700 MGI:5605894 NCBI chr 5:30,913,387...30,921,279
Ensembl chr 5:30,913,402...30,921,277
JBrowse link
G Rgcc regulator of cell cycle involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:79,288,750...79,301,635
Ensembl chr14:79,288,756...79,301,645
JBrowse link
G Smad3 SMAD family member 3 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:63,646,766...63,757,994
Ensembl chr 9:63,646,767...63,757,994
JBrowse link
G Sox9 SRY (sex determining region Y)-box 9 acts_upstream_of_or_within IMP (MGI:4848001|PMID:20881014) MGI PMID:20881014 MGI:4848001 NCBI chr11:112,782,210...112,787,757
Ensembl chr11:112,782,224...112,787,760
JBrowse link
regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen (serpin peptidase inhibitor, clade A, member 8) involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 8:124,556,587...124,569,706
Ensembl chr 8:124,556,534...124,569,706
JBrowse link
G Has2 hyaluronan synthase 2 acts_upstream_of_or_within ISO MGI
RGD
PMID:27094859 GO_REF:0000096 MGI:4417868 RGD:12910548 NCBI chr15:56,665,627...56,694,546
Ensembl chr15:56,665,627...56,694,539
JBrowse link
G Notch1 notch 1 involved_in IMP (MGI:5298073|PMID:21311046) BHF-UCL PMID:21311046 MGI:5298073 NCBI chr 2:26,457,902...26,503,822
Ensembl chr 2:26,457,903...26,516,663
JBrowse link
G Tie1 tyrosine kinase with immunoglobulin-like and EGF-like domains 1 acts_upstream_of IMP (MGI:6370101|PMID:31319059) BHF-UCL PMID:31319059 MGI:6370101 NCBI chr 4:118,471,191...118,489,849
Ensembl chr 4:118,471,191...118,490,061
JBrowse link
vitelline membrane formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog acts_upstream_of_or_within IMP (MGI:3766861|PMID:17881493) MGI PMID:17881493 MGI:3766861 NCBI chr 1:74,945,315...74,951,672
Ensembl chr 1:74,945,315...74,951,672
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28589
    cellular process 17470
      cellular component organization or biogenesis 6487
        cellular component organization 6298
          cellular component assembly 2836
            extracellular matrix assembly 43
              basement membrane assembly + 13
              biofilm matrix assembly 0
              elastic fiber assembly 11
              negative regulation of extracellular matrix assembly + 1
              positive regulation of extracellular matrix assembly + 9
              regulation of extracellular matrix assembly + 14
              vitelline membrane formation + 1
Path 2
Term Annotations click to browse term
  biological_process 28589
    cellular process 17470
      cellular component organization or biogenesis 6487
        cellular component organization 6298
          extracellular structure organization 312
            extracellular matrix organization 311
              extracellular matrix assembly 43
                basement membrane assembly + 13
                biofilm matrix assembly 0
                elastic fiber assembly 11
                negative regulation of extracellular matrix assembly + 1
                positive regulation of extracellular matrix assembly + 9
                regulation of extracellular matrix assembly + 14
                vitelline membrane formation + 1
paths to the root