Col15a1 (collagen, type XV, alpha 1) - Rat Genome Database

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Gene: Col15a1 (collagen, type XV, alpha 1) Mus musculus
Analyze
Symbol: Col15a1
Name: collagen, type XV, alpha 1
RGD ID: 1321942
MGI Page MGI
Description: Predicted to be an extracellular matrix structural constituent conferring tensile strength. Predicted to be involved in extracellular matrix organization. Predicted to act upstream of or within cell adhesion. Located in basement membrane. Is expressed in several structures, including brain; genitourinary system; gut; heart and pericardium; and musculoskeletal system. Orthologous to human COL15A1 (collagen type XV alpha 1 chain).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: collagen alpha-1(XV) chain; procollagen type XV; procollagen, type XV; type XV collagen
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39447,207,744 - 47,313,165 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl447,208,161 - 47,313,167 (+)EnsemblGRCm39 Ensembl
GRCm38447,207,655 - 47,313,167 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl447,208,161 - 47,313,167 (+)EnsemblGRCm38mm10GRCm38
MGSCv37447,220,884 - 47,326,037 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36447,229,293 - 47,334,265 (+)NCBIMGSCv36mm8
Celera447,230,177 - 47,335,715 (+)NCBICelera
Cytogenetic Map4B1NCBI
cM Map426.01NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
(2,4,5-trichlorophenoxy)acetic acid  (EXP)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
17beta-estradiol 3-benzoate  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
8-Br-cAMP  (ISO)
acrylamide  (ISO)
aldrin  (EXP)
aluminium oxide  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
benzo[a]pyrene  (EXP,ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
butanal  (ISO)
cantharidin  (EXP)
CGP 52608  (ISO)
chitosan  (ISO)
chloroethene  (EXP)
cisplatin  (ISO)
clofibrate  (EXP)
cocaine  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (EXP)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (EXP)
dimethylarsinic acid  (ISO)
diquat  (EXP)
diuron  (ISO)
doxorubicin  (EXP,ISO)
etoposide  (ISO)
fulvestrant  (ISO)
furan  (ISO)
graphite  (ISO)
inulin  (EXP)
isoprenaline  (EXP)
lead diacetate  (EXP,ISO)
lipopolysaccharide  (ISO)
manganese(II) chloride  (ISO)
methamphetamine  (EXP)
methotrexate  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
nickel sulfate  (EXP)
nitrofen  (ISO)
ozone  (EXP)
paclitaxel  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
parathion  (EXP)
paricalcitol  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
Phenelzine  (EXP)
phenobarbital  (EXP)
phosphorus atom  (ISO)
phosphorus(.)  (ISO)
pirinixic acid  (EXP)
potassium dichromate  (EXP)
pregnenolone 16alpha-carbonitrile  (EXP)
progesterone  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (EXP)
Soman  (ISO)
T-2 toxin  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
titanium dioxide  (EXP)
topotecan  (ISO)
trichloroethene  (ISO)
triclosan  (ISO)
trovafloxacin  (EXP)
valproic acid  (ISO)
vincristine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. MGD IEA MGD IEA
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8183894   PMID:8188291   PMID:8188673   PMID:8240330   PMID:9339358   PMID:9501087   PMID:9685319   PMID:9743358   PMID:10349636   PMID:10966814   PMID:11042159   PMID:11068203  
PMID:11076861   PMID:11158616   PMID:11180952   PMID:11217851   PMID:11827796   PMID:12477932   PMID:14531791   PMID:14614990   PMID:14752666   PMID:15121863   PMID:15614762   PMID:16141072  
PMID:16141073   PMID:16452166   PMID:16537572   PMID:17324935   PMID:18554416   PMID:18757743   PMID:19411759   PMID:20847313   PMID:20980607   PMID:21267068   PMID:21677750   PMID:21873635  
PMID:22159717   PMID:24006456   PMID:24218547   PMID:24952961   PMID:25188209   PMID:28071719   PMID:28079884   PMID:28218627   PMID:28283548   PMID:32582985   PMID:33580754   PMID:34279605  
PMID:34321664   PMID:34576139   PMID:35831318   PMID:35918150   PMID:37818607  


Genomics

Comparative Map Data
Col15a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39447,207,744 - 47,313,165 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl447,208,161 - 47,313,167 (+)EnsemblGRCm39 Ensembl
GRCm38447,207,655 - 47,313,167 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl447,208,161 - 47,313,167 (+)EnsemblGRCm38mm10GRCm38
MGSCv37447,220,884 - 47,326,037 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36447,229,293 - 47,334,265 (+)NCBIMGSCv36mm8
Celera447,230,177 - 47,335,715 (+)NCBICelera
Cytogenetic Map4B1NCBI
cM Map426.01NCBI
COL15A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38998,943,907 - 99,070,787 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl998,943,179 - 99,070,787 (+)EnsemblGRCh38hg38GRCh38
GRCh379101,706,189 - 101,833,069 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369100,745,959 - 100,872,889 (+)NCBINCBI36Build 36hg18NCBI36
Build 34998,785,744 - 98,912,613NCBI
Celera972,220,009 - 72,346,936 (+)NCBICelera
Cytogenetic Map9q22.33NCBI
HuRef971,304,829 - 71,431,858 (+)NCBIHuRef
CHM1_19101,852,422 - 101,979,513 (+)NCBICHM1_1
T2T-CHM13v2.09111,115,608 - 111,242,488 (+)NCBIT2T-CHM13v2.0
Col15a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8566,297,546 - 66,403,172 (+)NCBIGRCr8
mRatBN7.2561,501,963 - 61,607,591 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl561,501,963 - 61,607,591 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx563,474,193 - 63,579,242 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0565,293,481 - 65,398,535 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0565,262,946 - 65,368,000 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0562,840,360 - 62,950,240 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl564,476,317 - 64,542,645 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl562,840,360 - 62,950,240 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0568,988,935 - 69,056,133 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4563,825,907 - 63,930,633 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1563,743,680 - 63,931,859 (+)NCBI
Celera560,056,428 - 60,161,980 (+)NCBICelera
Cytogenetic Map5q22NCBI
Col15a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541926,574,835 - 26,687,803 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541926,577,172 - 26,687,750 (-)NCBIChiLan1.0ChiLan1.0
COL15A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21140,386,873 - 40,513,952 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1940,389,240 - 40,516,532 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0970,033,818 - 70,160,659 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1998,152,636 - 98,279,558 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl998,153,379 - 98,278,663 (+)Ensemblpanpan1.1panPan2
COL15A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11156,026,209 - 56,131,698 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1156,025,269 - 56,130,861 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1154,457,575 - 54,563,053 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01157,135,841 - 57,241,400 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1157,136,327 - 57,240,618 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11155,639,039 - 55,744,674 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01155,664,066 - 55,769,574 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01156,363,089 - 56,468,680 (+)NCBIUU_Cfam_GSD_1.0
Col15a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947170,933,970 - 171,043,872 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365247,481,761 - 7,590,544 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365247,481,541 - 7,591,452 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COL15A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1240,709,086 - 240,829,185 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11240,718,128 - 240,829,188 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
COL15A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11240,355,643 - 40,483,794 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603837,390,340 - 37,518,839 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Col15a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248251,939,685 - 2,041,575 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Col15a1
3272 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1790
Count of miRNA genes:593
Interacting mature miRNAs:709
Transcripts:ENSMUST00000082303, ENSMUST00000102917, ENSMUST00000107730, ENSMUST00000107731, ENSMUST00000124105, ENSMUST00000140094, ENSMUST00000140413, ENSMUST00000146967, ENSMUST00000148103
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
4142318Lyr2_mlymphoma resistance 2 (mouse)Not determined1401045763283678Mouse
4142047Mvwf3_mmodifier of von Willebrand factor 3 (mouse)Not determined14010457117072206Mouse
1301203Alcp8_malcohol preference locus 8 (mouse)Not determined41739516051395290Mouse
1301237Alcp7_malcohol preference locus 7 (mouse)Not determined41739516051395290Mouse
4141555Nbwa2_mNZB and NZW autoimmunity 2 (mouse)Not determined41789251551892635Mouse
4141911W6q15_mweight 6 weeks QTL 15 (mouse)Not determined1789261688982216Mouse
39128211Lwq22_mliver weight QTL 22 (mouse)41789261688982216Mouse
1357453Kidq4_mkidney weight QTL 4 (mouse)Not determined41789261688982216Mouse
1302058Hrtfm3_mheart failure modifier 3 (mouse)Not determined42211194456112145Mouse
1300769Pcyts2_mplasmacytoma susceptibility 2 (mouse)Not determined42211194456112145Mouse
1301437Scon1_msucrose consumption 1 (mouse)Not determined42237344856373612Mouse
1302075Bdln6_mbody length 6 (mouse)Not determined42237344856373612Mouse
1301697Sluc18_msusceptibility to lung cancer 18 (mouse)Not determined42237344856373612Mouse
1300574Im2_mimmunoregulatory 2 (mouse)Not determined42807768262077816Mouse
1301586Stheal3_msoft tissue heal 3 (mouse)Not determined42865844262658566Mouse
1357877Synch1_msynechia 1 (mouse)Not determined42870992562710107Mouse
1301990Arvm1_mautoimmune renal vasculitis 1 (mouse)Not determined42933264663332776Mouse
1301792Hdlq10_mHDL QTL 10 (mouse)Not determined43585970769859853Mouse
1300977Mopkd1_mmodifier of polycystic kidney disease progression 1 (mouse)Not determined43655083970550967Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000128993793Mouse
1302116Bbaa1_mB.burgdorferi-associated arthritis 1 (mouse)Not determined43825093072251078Mouse
10412178Habiir2_mhyperoxic acute lung injury imprinted region 2 (mouse)Not determined43945212663283678Mouse
1301786Bpq3_mblood pressure QTL 3 (mouse)Not determined44240224076402381Mouse
27226724Tibw2_mtibia width 2, proximal, 10 week (mouse)443000000108357197Mouse
1301941Mmtg1_mmodifier of mammary tumor growth 1 (mouse)Not determined44565844283099157Mouse
1558948Ath8_matherosclerosis 8 (mouse)Not determined445658442105156995Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138342753Mouse
12879977Bod2_mbone length and organs 2 (mouse)44628353180283678Mouse
10043880Adip23_madiposity 23 (mouse)Not determined44628353180283678Mouse
1558794Agnm1_mautoimmune glomerulonephritis in MRL 1 (mouse)Not determined44633264655755867Mouse
1300966Pabr2_mplasma apolipoprotein B (human) regulator 2 (mouse)Not determined446332646105801860Mouse
10449022Aanq1_maristolochic acid nephrotoxicity QTL 1 (mouse)44660382680603826Mouse
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123127211Mouse
13432179Acq1_mactivity chamber QTL 1 (mouse)44708712850187128Mouse

Markers in Region
AF011450  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38447,312,878 - 47,312,971UniSTSGRCm38
MGSCv37447,325,750 - 47,325,843UniSTSGRCm37
Celera447,335,428 - 47,335,521UniSTS
Cytogenetic Map4B1-B3UniSTS
Whitehead/MRC_RH4742.8UniSTS
Col15a1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4B1-B3UniSTS
cM Map4 UniSTS
D5Mco4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38447,225,915 - 47,226,061UniSTSGRCm38
MGSCv37447,238,787 - 47,238,933UniSTSGRCm37
Celera447,248,096 - 47,248,242UniSTS
Cytogenetic Map4B1-B3UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000082303   ⟹   ENSMUSP00000080921
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl447,208,161 - 47,313,163 (+)Ensembl
GRCm38.p6 Ensembl447,208,161 - 47,313,163 (+)Ensembl
RefSeq Acc Id: ENSMUST00000102917   ⟹   ENSMUSP00000099981
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl447,208,161 - 47,313,167 (+)Ensembl
GRCm38.p6 Ensembl447,208,161 - 47,313,167 (+)Ensembl
RefSeq Acc Id: ENSMUST00000107730   ⟹   ENSMUSP00000103358
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl447,303,722 - 47,313,162 (+)Ensembl
GRCm38.p6 Ensembl447,303,722 - 47,313,162 (+)Ensembl
RefSeq Acc Id: ENSMUST00000107731   ⟹   ENSMUSP00000103359
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl447,288,069 - 47,313,167 (+)Ensembl
GRCm38.p6 Ensembl447,288,069 - 47,313,167 (+)Ensembl
RefSeq Acc Id: ENSMUST00000124105
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl447,233,267 - 47,245,512 (+)Ensembl
GRCm38.p6 Ensembl447,233,267 - 47,245,512 (+)Ensembl
RefSeq Acc Id: ENSMUST00000140094
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl447,258,856 - 47,262,488 (+)Ensembl
GRCm38.p6 Ensembl447,258,856 - 47,262,488 (+)Ensembl
RefSeq Acc Id: ENSMUST00000140413   ⟹   ENSMUSP00000119292
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl447,288,057 - 47,293,222 (+)Ensembl
GRCm38.p6 Ensembl447,288,057 - 47,293,222 (+)Ensembl
RefSeq Acc Id: ENSMUST00000146967   ⟹   ENSMUSP00000118637
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl447,288,287 - 47,299,258 (+)Ensembl
GRCm38.p6 Ensembl447,288,287 - 47,299,258 (+)Ensembl
RefSeq Acc Id: ENSMUST00000148103
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl447,258,535 - 47,262,299 (+)Ensembl
GRCm38.p6 Ensembl447,258,535 - 47,262,299 (+)Ensembl
RefSeq Acc Id: NM_009928   ⟹   NP_034058
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39447,208,012 - 47,313,165 (+)NCBI
GRCm38447,208,012 - 47,313,165 (+)NCBI
MGSCv37447,220,884 - 47,326,037 (+)RGD
Celera447,230,177 - 47,335,715 (+)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: XR_001784085
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39447,207,744 - 47,310,865 (+)NCBI
GRCm38447,207,655 - 47,310,865 (+)NCBI
Sequence:
RefSeq Acc Id: NP_034058   ⟸   NM_009928
- Peptide Label: precursor
- UniProtKB: Q3UZ71 (UniProtKB/Swiss-Prot),   A2AJY3 (UniProtKB/Swiss-Prot),   Q9EQD9 (UniProtKB/Swiss-Prot),   O35206 (UniProtKB/Swiss-Prot),   A2AJY2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000103358   ⟸   ENSMUST00000107730
RefSeq Acc Id: ENSMUSP00000103359   ⟸   ENSMUST00000107731
RefSeq Acc Id: ENSMUSP00000118637   ⟸   ENSMUST00000146967
RefSeq Acc Id: ENSMUSP00000119292   ⟸   ENSMUST00000140413
RefSeq Acc Id: ENSMUSP00000099981   ⟸   ENSMUST00000102917
RefSeq Acc Id: ENSMUSP00000080921   ⟸   ENSMUST00000082303
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O35206-F1-model_v2 AlphaFold O35206 1-1367 view protein structure

Promoters
RGD ID:6883372
Promoter ID:EPDNEW_M5137
Type:initiation region
Name:Col15a1_2
Description:Mus musculus collagen, type XV, alpha 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M5138  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38447,208,018 - 47,208,078EPDNEW
RGD ID:6883374
Promoter ID:EPDNEW_M5138
Type:initiation region
Name:Col15a1_1
Description:Mus musculus collagen, type XV, alpha 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M5137  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38447,208,245 - 47,208,305EPDNEW
RGD ID:6835077
Promoter ID:MM_KWN:37548
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour
Transcripts:OTTMUST00000015668
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36447,316,021 - 47,316,521 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:88449 AgrOrtholog
Ensembl Genes ENSMUSG00000028339 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000082303.13 UniProtKB/TrEMBL
  ENSMUST00000102917 ENTREZGENE
  ENSMUST00000102917.11 UniProtKB/Swiss-Prot
  ENSMUST00000107730.3 UniProtKB/TrEMBL
  ENSMUST00000107731.9 UniProtKB/TrEMBL
  ENSMUST00000140413.8 UniProtKB/TrEMBL
  ENSMUST00000146967.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.200 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.10.100.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.1620.70 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro C-type_lectin-like/link_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Collagen UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Collagenase_NC10/endostatin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CTDL_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Laminin_G UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TSPN-like_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  XV/XVIII_trimerization_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12819 UniProtKB/Swiss-Prot
MGD MGI:88449 ENTREZGENE
NCBI Gene 12819 ENTREZGENE
PANTHER COLLAGEN ALPHA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  COLLAGEN ALPHA-1(X) CHAIN UniProtKB/TrEMBL
  COLLAGEN ALPHA-1(XV) CHAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  COLLAGEN ALPHA-3(IV) CHAIN UniProtKB/TrEMBL
Pfam Collagen UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Collagen_trimer UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Endostatin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Laminin_G_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Col15a1 PhenoGen
SMART LamG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TSPN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49899 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF56436 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2AJY2 ENTREZGENE, UniProtKB/TrEMBL
  A2AJY3 ENTREZGENE
  A2AJY4_MOUSE UniProtKB/TrEMBL
  A2AJY5_MOUSE UniProtKB/TrEMBL
  A2AJY6_MOUSE UniProtKB/TrEMBL
  A2AJY7_MOUSE UniProtKB/TrEMBL
  COFA1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3UZ71 ENTREZGENE
  Q9EQD9 ENTREZGENE
UniProt Secondary A2AJY3 UniProtKB/Swiss-Prot
  Q3UZ71 UniProtKB/Swiss-Prot
  Q9EQD9 UniProtKB/Swiss-Prot