Plod2 (procollagen lysine, 2-oxoglutarate 5-dioxygenase 2) - Rat Genome Database
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Gene: Plod2 (procollagen lysine, 2-oxoglutarate 5-dioxygenase 2) Mus musculus
Analyze
Symbol: Plod2
Name: procollagen lysine, 2-oxoglutarate 5-dioxygenase 2
RGD ID: 1551507
MGI Page MGI
Description: Predicted to have procollagen-lysine 5-dioxygenase activity. Predicted to be involved in hydroxylysine biosynthetic process and peptidyl-lysine hydroxylation. Predicted to localize to endoplasmic reticulum. Is expressed in several structures, including alimentary system; brain; cardiovascular system; sensory organ; and skeleton. Orthologous to human PLOD2 (procollagen-lysine,2-oxoglutarate 5-dioxygenase 2); PARTICIPATES IN lysine degradation pathway; INTERACTS WITH 1,1-dichloroethene; 1,2-dimethylhydrazine; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: D530025C14Rik; LH; LH2; lysyl hydroxylase 2; Plo; Plod-2; procollagen-lysine,2-oxoglutarate 5-dioxygenase 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39992,421,828 - 92,490,481 (+)NCBIGRCm39mm39
GRCm38992,539,636 - 92,608,428 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl992,542,223 - 92,608,428 (+)EnsemblGRCm38mm10GRCm38
MGSCv37992,437,061 - 92,503,266 (+)NCBIGRCm37mm9NCBIm37
MGSCv36992,346,223 - 92,412,195 (+)NCBImm8
Celera992,126,694 - 92,192,758 (+)NCBICelera
Cytogenetic Map9E3.3NCBI
cM Map948.4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (EXP)
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4,6-trinitrobenzenesulfonic acid  (EXP)
2-hydroxypropanoic acid  (ISO)
4,4'-diaminodiphenylmethane  (EXP,ISO)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxyphenyl retinamide  (EXP)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (ISO)
aflatoxin B1  (EXP,ISO)
aflatoxin M1  (ISO)
aldehydo-D-glucose  (EXP)
all-trans-retinoic acid  (ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (EXP,ISO)
beta-naphthoflavone  (ISO)
bexarotene  (ISO)
bis(2-chloroethyl) sulfide  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
butan-1-ol  (ISO)
cadmium dichloride  (EXP,ISO)
cadmium sulfate  (ISO)
carbon nanotube  (EXP)
chloropicrin  (ISO)
choline  (EXP)
ciglitazone  (ISO)
cisplatin  (ISO)
cobalt atom  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
curcumin  (EXP)
cyclosporin A  (EXP,ISO)
D-glucose  (EXP)
dexamethasone  (ISO)
dextran sulfate  (EXP)
dicrotophos  (ISO)
dimethyl sulfoxide  (ISO)
dioxygen  (ISO)
disulfiram  (ISO)
dorsomorphin  (ISO)
doxifluridine  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
endosulfan  (ISO)
Enterolactone  (ISO)
entinostat  (ISO)
ethanol  (EXP,ISO)
ethyl methanesulfonate  (ISO)
folic acid  (EXP,ISO)
fonofos  (ISO)
furan  (ISO)
genistein  (ISO)
glucose  (EXP)
isoniazide  (ISO)
L-methionine  (EXP)
lead diacetate  (ISO)
medroxyprogesterone acetate  (ISO)
mercury dibromide  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
mifepristone  (ISO)
N-nitrosodiethylamine  (ISO)
N-nitrosodimethylamine  (ISO)
nickel atom  (ISO)
oxaliplatin  (ISO)
ozone  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
parathion  (ISO)
pentane-2,3-dione  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (ISO)
phenylmercury acetate  (ISO)
phosgene  (EXP)
progesterone  (ISO)
protein kinase inhibitor  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
Salinomycin  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sodium arsenate  (EXP,ISO)
sunitinib  (ISO)
tamoxifen  (EXP)
Tanshinone I  (ISO)
terbufos  (ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (EXP,ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
Tungsten carbide  (ISO)
valproic acid  (ISO)
vandetanib  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)
Yessotoxin  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:10349636   PMID:10429951   PMID:11042159   PMID:11076861   PMID:11130984   PMID:11334715   PMID:11896059   PMID:12477932   PMID:12520002   PMID:14681479   PMID:15174142   PMID:15229603  
PMID:15231023   PMID:15377789   PMID:15489334   PMID:15619673   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16467571   PMID:16996725   PMID:18424556   PMID:19110540   PMID:21267068  
PMID:21873635   PMID:22906538   PMID:23069856   PMID:24457600   PMID:24996922   PMID:27113764   PMID:27803159   PMID:28162974   PMID:28378777   PMID:30093726   PMID:30905411   PMID:31138677  
PMID:31669249   PMID:32325033  


Genomics

Comparative Map Data
Plod2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39992,421,828 - 92,490,481 (+)NCBIGRCm39mm39
GRCm38992,539,636 - 92,608,428 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl992,542,223 - 92,608,428 (+)EnsemblGRCm38mm10GRCm38
MGSCv37992,437,061 - 92,503,266 (+)NCBIGRCm37mm9NCBIm37
MGSCv36992,346,223 - 92,412,195 (+)NCBImm8
Celera992,126,694 - 92,192,758 (+)NCBICelera
Cytogenetic Map9E3.3NCBI
cM Map948.4NCBI
PLOD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl3146,069,440 - 146,163,653 (-)EnsemblGRCh38hg38GRCh38
GRCh383146,069,437 - 146,161,184 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh373145,787,225 - 145,879,282 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363147,269,917 - 147,361,972 (-)NCBINCBI36hg18NCBI36
Celera3144,204,566 - 144,296,620 (-)NCBI
Cytogenetic Map3q24NCBI
HuRef3143,164,166 - 143,256,088 (-)NCBIHuRef
CHM1_13145,750,160 - 145,842,267 (-)NCBICHM1_1
Plod2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0899,977,334 - 100,059,736 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl899,977,334 - 100,059,736 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0899,543,695 - 99,545,578 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0899,462,925 - 99,529,696 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4897,525,279 - 97,623,152 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1897,544,733 - 97,642,604 (+)NCBI
Celera892,602,361 - 92,678,608 (+)NCBICelera
Cytogenetic Map8q31NCBI
Plod2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547411,392,163 - 11,475,508 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495547411,392,163 - 11,473,918 (+)NCBIChiLan1.0ChiLan1.0
PLOD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13150,675,423 - 150,764,939 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3150,675,424 - 150,764,939 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03143,091,833 - 143,181,831 (-)NCBIMhudiblu_PPA_v0panPan3
PLOD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2341,290,567 - 41,382,807 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12341,290,183 - 41,382,917 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Plod2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365199,053,192 - 9,139,221 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLOD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1386,401,244 - 86,513,105 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11386,402,673 - 86,513,167 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21394,175,156 - 94,243,446 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PLOD2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11544,489,804 - 44,590,284 (+)NCBI
ChlSab1.1 Ensembl1544,490,042 - 44,591,526 (+)Ensembl
Plod2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473022,944,710 - 23,034,200 (-)NCBI

Position Markers
Plod2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv37992,488,645 - 92,490,190UniSTSGRCm37
Celera992,178,107 - 92,179,652UniSTS
Cytogenetic Map9E3.3UniSTS
cM Map952.0UniSTS
Plod2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38992,593,807 - 92,595,352UniSTSGRCm38
MGSCv37992,488,645 - 92,490,190UniSTSGRCm37
Celera992,178,107 - 92,179,652UniSTS
Cytogenetic Map9E3.3UniSTS
cM Map952.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93739490198819654Mouse
4141224Dxmod_mdoxorubicin nephropathy modifier (mouse)Not determined49541121101528921Mouse
1301241Renf1_mrenal failure 1 (mouse)Not determined95212317899910428Mouse
1301172Fembrs6_mfemur breaking strength 6 (mouse)Not determined95911710593117252Mouse
1301803Stheal9_msoft tissue heal 9 (mouse)Not determined95911710593117252Mouse
5491195Mobq8_mmultigenic obesity QTL 8 (mouse)Not determined95946266493462846Mouse
1300848Skull13_mskull morphology 13 (mouse)Not determined95946266493462846Mouse
1301456Adip5_madiposity 5 (mouse)Not determined95946266493462846Mouse
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959990000109260000Mouse
1301611Lrnx3_mlearning contextual 3 (mouse)Not determined96224248596242599Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
11081165Psl6_mpromotion susceptibility QTL 6 (mouse)96513390995640755Mouse
1301636Lith5_mlithogenic gene 5 (mouse)Not determined966207024100207122Mouse
10045638Heal29_mwound healing/regeneration 29 (mouse)Not determined967124167101124167Mouse
1357610Vtbt8_mvertebral trabecular bone trait 8 (mouse)Not determined968897510102897652Mouse
1301924Bmd10_mbone mineral density 10 (mouse)Not determined968897510102897652Mouse
1301302Pas4_mpulmonary adenoma susceptibility 4 (mouse)Not determined969239845103239920Mouse
10412174Habiir4_mhyperoxic acute lung injury imprinted region 4 (mouse)Not determined96936046598819654Mouse
1301621Hpic1_mhaloperidol-induced catalepsy 1 (mouse)Not determined969546513103546645Mouse
1301573Etohcta8_methanol conditioned taste aversion 8 (mouse)Not determined972977005106977152Mouse
10054068El8_mepilepsy 8 (mouse)Not determined972977005106977152Mouse
1301725Lifespan1_mlife span 1 (mouse)Not determined974368177108368325Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975775364114474379Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975775364114474379Mouse
1301869Tbbmd4_mtotal body bone mineral density 4 (mouse)Not determined976117105101528921Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976535936110536130Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978640645112640755Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979397810113397888Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981798268115798392Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982910333116910428Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982910333116910428Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982910333116910428Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984528818118528921Mouse
10412180Msam3_mmuscle, skeletal, activity measure 3 (mouse)Not determined985897510108641186Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986230401120230530Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986239845120289624Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986748483120748483Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989977005118938021Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:832
Count of miRNA genes:395
Interacting mature miRNAs:433
Transcripts:ENSMUST00000070522, ENSMUST00000160142, ENSMUST00000160359, ENSMUST00000161906
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001142916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_011961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC165156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF080572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF283255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH010553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AV488215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB644981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC021352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF615856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FJ416599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000070522   ⟹   ENSMUSP00000068611
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl992,542,223 - 92,608,428 (+)Ensembl
RefSeq Acc Id: ENSMUST00000160142
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl992,573,588 - 92,591,684 (+)Ensembl
RefSeq Acc Id: ENSMUST00000160359   ⟹   ENSMUSP00000125373
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl992,542,264 - 92,608,420 (+)Ensembl
RefSeq Acc Id: ENSMUST00000161906
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl992,595,345 - 92,601,066 (+)Ensembl
RefSeq Acc Id: ENSMUST00000190075
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl992,601,342 - 92,602,617 (+)Ensembl
RefSeq Acc Id: NM_001142916   ⟹   NP_001136388
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39992,424,276 - 92,490,481 (+)NCBI
GRCm38992,542,223 - 92,608,428 (+)ENTREZGENE
MGSCv37992,437,061 - 92,503,266 (+)RGD
Celera992,126,694 - 92,192,758 (+)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_011961   ⟹   NP_036091
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39992,424,276 - 92,490,481 (+)NCBI
GRCm38992,542,223 - 92,608,428 (+)ENTREZGENE
MGSCv37992,437,061 - 92,503,266 (+)RGD
Celera992,126,694 - 92,192,758 (+)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030244393   ⟹   XP_030100253
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39992,421,828 - 92,490,481 (+)NCBI
GRCm38992,539,636 - 92,608,428 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036155021   ⟹   XP_036010914
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39992,421,828 - 92,483,628 (+)NCBI
RefSeq Acc Id: XM_036155022   ⟹   XP_036010915
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39992,421,828 - 92,490,481 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_036091   ⟸   NM_011961
- Peptide Label: isoform 2 precursor
- UniProtKB: Q9R0B9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001136388   ⟸   NM_001142916
- Peptide Label: isoform 1 precursor
- UniProtKB: Q9R0B9 (UniProtKB/Swiss-Prot),   E9Q718 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030100253   ⟸   XM_030244393
- Peptide Label: isoform X2
RefSeq Acc Id: ENSMUSP00000068611   ⟸   ENSMUST00000070522
RefSeq Acc Id: ENSMUSP00000125373   ⟸   ENSMUST00000160359
RefSeq Acc Id: XP_036010915   ⟸   XM_036155022
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036010914   ⟸   XM_036155021
- Peptide Label: isoform X1
Protein Domains
Fe2OG dioxygenase

Promoters
RGD ID:6844960
Promoter ID:MM_KWN:58379
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day3,   BoneMarrow_2Hour,   Brain,   ES_Cell,   Kidney,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000077170,   UC009RAV.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36992,436,926 - 92,437,426 (+)MPROMDB
RGD ID:8670448
Promoter ID:EPDNEW_M13255
Type:multiple initiation site
Name:Plod2_1
Description:Mus musculus procollagen lysine, 2-oxoglutarate 5-dioxygenase2 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38992,542,265 - 92,542,325EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1347007 AgrOrtholog
Ensembl Genes ENSMUSG00000032374 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000068611 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000125373 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000070522 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000160359 ENTREZGENE, UniProtKB/TrEMBL
InterPro Nucleotide-diphossugar_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Oxoglu/Fe-dep_dioxygenase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pro_4_hyd_alph UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Procol_lys_dOase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:26432 UniProtKB/Swiss-Prot
MGD MGI:1347007 ENTREZGENE
NCBI Gene 26432 ENTREZGENE
Pfam 2OG-FeII_Oxy UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Plod2 PhenoGen
PROSITE FE2OG_OXY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LYS_HYDROXYLASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART P4Hc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF53448 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Mm.79983 ENTREZGENE
UniProt E9Q718 ENTREZGENE, UniProtKB/TrEMBL
  PLOD2_MOUSE UniProtKB/Swiss-Prot
  Q3U055_MOUSE UniProtKB/TrEMBL
  Q923L1_MOUSE UniProtKB/TrEMBL
  Q923L2_MOUSE UniProtKB/TrEMBL
  Q9R0B9 ENTREZGENE
UniProt Secondary E9QM54 UniProtKB/Swiss-Prot
  Q8VDT4 UniProtKB/Swiss-Prot