Sema5a (sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A) - Rat Genome Database

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Gene: Sema5a (sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A) Mus musculus
Analyze
Symbol: Sema5a
Name: sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A
RGD ID: 1318545
MGI Page MGI
Description: Exhibits axon guidance receptor activity and semaphorin receptor binding activity. Involved in several processes, including angiogenesis; axonogenesis; and regulation of signal transduction. Localizes to integral component of membrane. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; hemolymphoid system; and sensory organ. Orthologous to human SEMA5A (semaphorin 5A); INTERACTS WITH (R)-lipoic acid; 1,2-dimethylhydrazine; 2,4-diaminotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 5930434A13; 9130201M22Rik; AI464145; M-Sema D; sem; sema F; Semaf; semaphorin F; semaphorin-5A; semaphorin-F; semF
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391532,244,959 - 32,696,487 (+)NCBIGRCm39mm39
GRCm39 Ensembl1532,244,956 - 32,696,487 (+)Ensembl
GRCm381532,244,813 - 32,696,341 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1532,244,810 - 32,696,341 (+)EnsemblGRCm38mm10GRCm38
MGSCv371532,174,568 - 32,626,096 (+)NCBIGRCm37mm9NCBIm37
MGSCv361532,361,948 - 32,640,922 (+)NCBImm8
Celera1532,949,262 - 33,396,657 (+)NCBICelera
Cytogenetic Map15B3.1NCBI
cM Map1513.02NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Additional References at PubMed
PMID:7656991   PMID:8812066   PMID:8817451   PMID:8889548   PMID:9271677   PMID:10318831   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11852232   PMID:12397112  
PMID:12435358   PMID:12477932   PMID:12506007   PMID:14681479   PMID:15051154   PMID:15218527   PMID:15226265   PMID:15281082   PMID:15603739   PMID:15743826   PMID:16141072   PMID:16141073  
PMID:16284245   PMID:16537572   PMID:16602821   PMID:17145500   PMID:18287559   PMID:18617019   PMID:19334288   PMID:19521566   PMID:19850054   PMID:20436479   PMID:20637190   PMID:21192082  
PMID:21677750   PMID:21777623   PMID:21835343   PMID:21873635   PMID:23431145   PMID:23622063   PMID:24014668   PMID:24192035   PMID:24550112   PMID:24803655   PMID:24952961   PMID:25313870  
PMID:26633812   PMID:29031500   PMID:29320740  


Genomics

Comparative Map Data
Sema5a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391532,244,959 - 32,696,487 (+)NCBIGRCm39mm39
GRCm39 Ensembl1532,244,956 - 32,696,487 (+)Ensembl
GRCm381532,244,813 - 32,696,341 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1532,244,810 - 32,696,341 (+)EnsemblGRCm38mm10GRCm38
MGSCv371532,174,568 - 32,626,096 (+)NCBIGRCm37mm9NCBIm37
MGSCv361532,361,948 - 32,640,922 (+)NCBImm8
Celera1532,949,262 - 33,396,657 (+)NCBICelera
Cytogenetic Map15B3.1NCBI
cM Map1513.02NCBI
SEMA5A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl59,035,033 - 9,546,075 (-)EnsemblGRCh38hg38GRCh38
GRCh3859,035,030 - 9,546,121 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3759,035,145 - 9,546,187 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3659,088,138 - 9,599,233 (-)NCBINCBI36hg18NCBI36
Build 3459,091,858 - 9,599,158NCBI
Celera59,075,672 - 9,586,506 (-)NCBI
Cytogenetic Map5p15.31NCBI
HuRef59,020,618 - 9,529,962 (-)NCBIHuRef
CHM1_159,034,070 - 9,546,215 (-)NCBICHM1_1
Sema5a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2283,309,843 - 83,741,084 (+)NCBI
Rnor_6.0 Ensembl285,377,318 - 85,808,970 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0285,377,318 - 85,808,970 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02105,049,343 - 105,480,370 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4284,725,092 - 85,158,599 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1284,835,136 - 85,097,066 (+)NCBI
Celera278,800,990 - 79,231,054 (+)NCBICelera
Cytogenetic Map2q22NCBI
Sema5a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555046,350,866 - 6,762,104 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555046,343,747 - 6,691,945 (-)NCBIChiLan1.0ChiLan1.0
SEMA5A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.159,168,549 - 9,672,779 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl59,168,549 - 9,564,356 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v059,349,473 - 9,852,183 (-)NCBIMhudiblu_PPA_v0panPan3
SEMA5A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1344,612,202 - 5,089,071 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl344,612,142 - 5,082,280 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha349,122,860 - 9,593,613 (+)NCBI
ROS_Cfam_1.0344,522,038 - 4,992,481 (+)NCBI
UMICH_Zoey_3.1344,573,215 - 5,048,444 (+)NCBI
UNSW_CanFamBas_1.0344,553,933 - 5,029,831 (+)NCBI
UU_Cfam_GSD_1.0344,776,835 - 5,250,400 (+)NCBI
Sema5a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213237,599,219 - 238,050,371 (+)NCBI
SpeTri2.0NW_0049366431,352,401 - 1,803,553 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SEMA5A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1672,492,516 - 73,329,010 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11672,796,453 - 73,335,974 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21678,742,131 - 79,220,468 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SEMA5A
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.148,598,680 - 9,095,346 (-)NCBI
ChlSab1.1 Ensembl48,600,959 - 9,095,423 (-)Ensembl
Vero_WHO_p1.0NW_02366606419,470,071 - 19,975,962 (+)NCBI
Sema5a
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247516,429,814 - 6,913,673 (-)NCBI

Position Markers
Sema5a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371532,480,055 - 32,480,145UniSTSGRCm37
Celera1533,250,839 - 33,250,929UniSTS
Cytogenetic Map15B3.1UniSTS
cM Map1519.7UniSTS
X97817  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map15B3.1UniSTS
Whitehead_YAC15 UniSTS
D15Mit126  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381532,578,270 - 32,578,398UniSTSGRCm38
MGSCv371532,508,025 - 32,508,153UniSTSGRCm37
Celera1533,278,807 - 33,278,935UniSTS
Cytogenetic Map15B3.1UniSTS
cM Map1514.8UniSTS
Whitehead Genetic1514.2UniSTS
Whitehead/MRC_RH15333.34UniSTS
Whitehead_YAC15 UniSTS
D15Mit137  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381532,473,727 - 32,473,866UniSTSGRCm38
MGSCv371532,403,482 - 32,403,621UniSTSGRCm37
Celera1533,174,214 - 33,174,353UniSTS
Cytogenetic Map15B3.1UniSTS
cM Map1518.9UniSTS
Whitehead Genetic1514.2UniSTS
Whitehead_YAC15 UniSTS
D15Mit54  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381532,645,197 - 32,645,324UniSTSGRCm38
MGSCv371532,574,952 - 32,575,079UniSTSGRCm37
Celera1533,345,549 - 33,345,676UniSTS
Cytogenetic Map15B3.1UniSTS
cM Map1514.8UniSTS
Whitehead Genetic1514.2UniSTS
AI464145  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381532,695,970 - 32,696,083UniSTSGRCm38
MGSCv371532,625,725 - 32,625,838UniSTSGRCm37
Celera1533,396,286 - 33,396,399UniSTS
Cytogenetic Map15B3.1UniSTS
Whitehead/MRC_RH15316.3UniSTS
fi29c12.x1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Celera1533,095,015 - 33,096,171UniSTS
Cytogenetic Map15B3.1UniSTS
Sema5a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map15B3.1UniSTS
Sema5a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381532,550,300 - 32,550,390UniSTSGRCm38
MGSCv371532,480,055 - 32,480,145UniSTSGRCm37
Celera1533,250,839 - 33,250,929UniSTS
Cytogenetic Map15B3.1UniSTS
cM Map1519.7UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10401902Sicd2_mseizure-induced cell death 2 (mouse)Not determined15344490771325689Mouse
4141952W3q7_mweight 3 weeks QTL 7 (mouse)Not determined346021278717086Mouse
4142448Tailq6_mtail length QTL 6 (mouse)Not determined346021278717086Mouse
4142252Tailaq4_mtail length adjusted QTL 4 (mouse)Not determined346021278717086Mouse
1357559Scfq2_msubcutaneous fat pad weight QTL 2 (mouse)Not determined15346021278717086Mouse
1357659Epfpq4_mepididymal fat percentage QTL 4 (mouse)Not determined15346021278717086Mouse
4141358Ath22_matherosclerosis 22 (mouse)Not determined346456637464566Mouse
11252136Modvl4_mmodifier of vacuolated lens (mouse)15562040839620528Mouse
26884409Bzwq16_mbi-zygomatic width QTL 16, 16 week (mouse)15610000038000000Mouse
26884384Skwq12_mskull length QTL 12, 16 week (mouse)15610000050900000Mouse
26884387Skwq8_mskull length QTL 8, 10 week (mouse)15610000068400000Mouse
26884412Bzwq10_mbi-zygomatic width QTL 10, 10 week (mouse)15610000071600000Mouse
26884417Bzwq4_mbi-zygomatic width QTL 4, 5 week (mouse)15610000072600000Mouse
27226786Feml11_mfemur length 11, 5 week (mouse)15610000076000000Mouse
27095932Ulnl11_mulna length 11, 16 week (mouse)15610000076500000Mouse
27226717Tibw4_mtibia width 4, proximal, 10 week (mouse)15610000078800000Mouse
27226734Tibmd5_mtibia midshaft diameter 5, 10 week (mouse)15610000086800000Mouse
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156100000100900000Mouse
26884429Zlq6_mzygomatic length QTL 6, 10 week (mouse)15680000045100000Mouse
27226721Tibw8_mtibia width 8, proximal, 16 week (mouse)15690000076000000Mouse
27226773Tibl16_mtibia length 16, 10 week (mouse)15690000076000000Mouse
27226777Tibl8_mtibia length 8, 5 week (mouse)15690000084700000Mouse
27095940Ulnl8_mulna length 8, 10 week (mouse)15720000055400000Mouse
27226759Feml17_mfemur length 17, 10 week (mouse)15760000055400000Mouse
27226755Feml22_mfemur length 22, 16 week (mouse)15760000059400000Mouse
27095922Pglq11_mpelvic girdle length QTL 11, 10 week (mouse)15810000038900000Mouse
26884439Sklq11_mskull length QTL 11, 10 week (mouse)15810000047800000Mouse
4140994Shali3_msurvival time to hyperoxic acute lung injury 3 (mouse)Not determined927293643448484Mouse
10412172Habiir5_mhyperoxic acute lung injury imprinted region 5 (mouse)Not determined15927293643448484Mouse
4141192Ssrq2_mstress response QTL 2 (mouse)Not determined927293656323454Mouse
1301433Rapop5_mradiation-induced apoptosis 5 (mouse)Not determined15927293679590561Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402117102988123Mouse
1302165Yv_myellow value (mouse)Not determined151384686047847002Mouse
1301020Pheo_mpheomelanin (mouse)Not determined151384686047847002Mouse
1301951Eila3_methanol induced locomotor activity 3 (mouse)Not determined151492744148927610Mouse
4141423Nstr2_mnerve sheath tumor resistance QTL 2 (mouse)Not determined1492744148927610Mouse
1302007Bbaa14_mB.burgdorferi-associated arthritis 14 (mouse)Not determined151492744148927610Mouse
1301499Bdln2_mbody length 2 (mouse)Not determined151564519749645324Mouse
12859288Criq1_mCitrobacter rodentium infection QTL 1 (mouse)151603380850033808Mouse
26884423Zlq10_mzygomatic length QTL 10, 16 week (mouse)152060000050900000Mouse
14928313Manh78_mmandible shape 78 (mouse)152148439755484397Mouse
12859289Criq3_mCitrobacter rodentium infection QTL 3 (mouse)152273036956730369Mouse
4142160Femwf10_mfemur work to failure 10 (mouse)Not determined2302961857029764Mouse
1301557Bbaa22_mB.burgdorferi-associated arthritis 22 (mouse)Not determined152459917658599409Mouse
1300967Bdt6_mbone density traits 6 (mouse)Not determined152543241059432532Mouse
4141409Radsvq1_mradiation sensitivity QTL 1 (mouse)Not determined2562158259621582Mouse
1301063Dob4_mdietary obesity 4 (mouse)4.3Body weightmesenteric152603559437781057Mouse
1301760Dob9_mdietary obesity 9 (mouse)Body fat amountadiposity index152603559437781057Mouse
1301345Bgeq14_mbody growth early QTL 14 (mouse)Not determined152644838460448484Mouse
1300772Bglq16_mbody growth late QTL 16 (mouse)Not determined152644838460448484Mouse
1357514Mbis3_mMycobacterium bovis-induced systemic lupus erythematosus 3 (mouse)Not determined162644838460448484Mouse
1301406Egrd2_mearly growth rate (mouse)Not determined152644838460448484Mouse
27226800Scvln20_msacral vertebrae length 2, 16 week (mouse)152660000066500000Mouse
1301450Bpq6_mblood pressure QTL 6 (mouse)Not determined152841925062419343Mouse
1357512Bsbob5_mBSB obesity 5 (mouse)Not determined152841925062419343Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800000102100000Mouse
26884392Humsd8_mhumerus midshaft diameter 8, 16 week (mouse)152930000076200000Mouse
26884452Sklq17_mskull length QTL 17, 16 week (mouse)153020000058100000Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578270103517472Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1970
Count of miRNA genes:810
Interacting mature miRNAs:1060
Transcripts:ENSMUST00000067458
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_009154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006520043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011245340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030248430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030248431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC110236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC113289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC137123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK039101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK043386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK054256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK141612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK143026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB643469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC065137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X97817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000067458   ⟹   ENSMUSP00000069024
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1532,244,813 - 32,696,341 (+)Ensembl
RefSeq Acc Id: ENSMUST00000226876
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1532,244,810 - 32,563,558 (+)Ensembl
RefSeq Acc Id: ENSMUST00000227429
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1532,601,675 - 32,689,636 (+)Ensembl
RefSeq Acc Id: ENSMUST00000227802
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1532,245,038 - 32,632,197 (+)Ensembl
RefSeq Acc Id: ENSMUST00000227976
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1532,245,103 - 32,678,594 (+)Ensembl
RefSeq Acc Id: ENSMUST00000228015
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1532,244,831 - 32,642,352 (+)Ensembl
RefSeq Acc Id: ENSMUST00000228103
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1532,244,824 - 32,270,884 (+)Ensembl
RefSeq Acc Id: ENSMUST00000228442
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1532,244,822 - 32,619,249 (+)Ensembl
RefSeq Acc Id: ENSMUST00000228555
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1532,244,825 - 32,564,896 (+)Ensembl
RefSeq Acc Id: NM_009154   ⟹   NP_033180
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391532,244,959 - 32,696,487 (+)NCBI
GRCm381532,244,813 - 32,696,341 (+)NCBI
MGSCv371532,174,568 - 32,626,096 (+)RGD
Celera1532,949,262 - 33,396,657 (+)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006520043   ⟹   XP_006520106
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391532,245,530 - 32,696,487 (+)NCBI
GRCm381532,245,533 - 32,696,341 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011245340   ⟹   XP_011243642
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391532,245,374 - 32,696,487 (+)NCBI
GRCm381532,245,228 - 32,696,341 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030248430   ⟹   XP_030104290
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391532,245,366 - 32,696,487 (+)NCBI
GRCm381532,245,749 - 32,696,341 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030248431   ⟹   XP_030104291
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391532,245,022 - 32,696,487 (+)NCBI
GRCm381532,245,340 - 32,696,341 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036159280   ⟹   XP_036015173
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391532,245,477 - 32,696,487 (+)NCBI
RefSeq Acc Id: XM_036159281   ⟹   XP_036015174
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391532,245,370 - 32,696,487 (+)NCBI
RefSeq Acc Id: XM_036159282   ⟹   XP_036015175
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391532,244,964 - 32,696,487 (+)NCBI
RefSeq Acc Id: XM_036159283   ⟹   XP_036015176
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391532,245,370 - 32,696,487 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_033180   ⟸   NM_009154
- Peptide Label: precursor
- UniProtKB: Q3UPZ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006520106   ⟸   XM_006520043
- Peptide Label: isoform X1
- UniProtKB: Q3UPZ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011243642   ⟸   XM_011245340
- Peptide Label: isoform X1
- UniProtKB: Q3UPZ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030104291   ⟸   XM_030248431
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030104290   ⟸   XM_030248430
- Peptide Label: isoform X1
RefSeq Acc Id: ENSMUSP00000069024   ⟸   ENSMUST00000067458
RefSeq Acc Id: XP_036015175   ⟸   XM_036159282
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036015174   ⟸   XM_036159281
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036015176   ⟸   XM_036159283
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036015173   ⟸   XM_036159280
- Peptide Label: isoform X1
Protein Domains
Sema   TSP type-1

Promoters
RGD ID:6826458
Promoter ID:MM_KWN:18199
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   Brain,   Kidney,   Lung,   Spleen
Transcripts:NM_009154,   UC007VKO.1,   UC007VKP.1,   UC007VKQ.1,   UC007VKR.1,   UC007VKS.1,   UC007VKT.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361532,174,444 - 32,174,944 (+)MPROMDB
RGD ID:8683536
Promoter ID:EPDNEW_M19798
Type:initiation region
Name:Sema5a_1
Description:Mus musculus sema domain, seven thrombospondin repeats (type1 and type 1-like), transmembrane domain and short cytoplasmicdomain, 5A , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M19799  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381532,244,824 - 32,244,884EPDNEW
RGD ID:8683538
Promoter ID:EPDNEW_M19799
Type:single initiation site
Name:Sema5a_2
Description:Mus musculus sema domain, seven thrombospondin repeats (type1 and type 1-like), transmembrane domain and short cytoplasmicdomain, 5A , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M19798  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381532,257,884 - 32,257,944EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:107556 AgrOrtholog
Ensembl Genes ENSMUSG00000022231 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000069024 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000067458 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.20.100.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Plexin_repeat UniProtKB/TrEMBL
  PSI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sema5A_sema UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Semap_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Semap_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Semaphorin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TSP1_rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TSP1_rpt_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20356 UniProtKB/TrEMBL
MGD MGI:107556 ENTREZGENE
NCBI Gene 20356 ENTREZGENE
PANTHER PTHR11036 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PSI UniProtKB/TrEMBL
  Sema UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TSP_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Sema5a PhenoGen
PROSITE SEMA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TSP1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART PSI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sema UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TSP1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF101912 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF82895 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt Q3TZP8_MOUSE UniProtKB/TrEMBL
  Q3UPZ0 ENTREZGENE, UniProtKB/TrEMBL
  Q62217 ENTREZGENE
  Q6P1C9_MOUSE UniProtKB/TrEMBL
  Q8BYL6_MOUSE UniProtKB/TrEMBL
  SEM5A_MOUSE UniProtKB/Swiss-Prot