Impg1 (interphotoreceptor matrix proteoglycan 1) - Rat Genome Database

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Gene: Impg1 (interphotoreceptor matrix proteoglycan 1) Mus musculus
Analyze
Symbol: Impg1
Name: interphotoreceptor matrix proteoglycan 1
RGD ID: 733126
MGI Page MGI
Description: Predicted to enable chondroitin sulfate binding activity; heparin binding activity; and hyaluronic acid binding activity. Acts upstream of or within extracellular matrix organization. Located in interphotoreceptor matrix. Human ortholog(s) of this gene implicated in retinitis pigmentosa and vitelliform macular dystrophy. Orthologous to human IMPG1 (interphotoreceptor matrix proteoglycan 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: A930015H12Rik; IMP1; IMP150; interphotoreceptor matrix proteoglycan of 150 kDa; IPM-150; S; sialoprotein associated with cones and rods; SPACR
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39980,215,467 - 80,347,707 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl980,220,612 - 80,347,534 (-)EnsemblGRCm39 Ensembl
GRCm38980,312,773 - 80,465,654 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl980,313,330 - 80,465,481 (-)EnsemblGRCm38mm10GRCm38
MGSCv37980,328,600 - 80,359,045 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv37980,161,137 - 80,252,614 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36980,098,771 - 80,190,491 (-)NCBIMGSCv36mm8
Celera977,456,948 - 77,581,047 (-)NCBICelera
Cytogenetic Map9E1NCBI
cM Map943.99NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Molecular characterization of the murine orthologue of the human retinal proteoglycan IPM 150. Kuehn MH, etal., Mol Vis 2000 Aug 24;6:148-56.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10995555   PMID:11042159   PMID:11076861   PMID:11991949   PMID:12477932   PMID:15489334   PMID:16141072   PMID:16141073   PMID:30550785   PMID:32265257   PMID:32325033  
PMID:36109576   PMID:36140676   PMID:37975905   PMID:38355793  


Genomics

Comparative Map Data
Impg1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39980,215,467 - 80,347,707 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl980,220,612 - 80,347,534 (-)EnsemblGRCm39 Ensembl
GRCm38980,312,773 - 80,465,654 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl980,313,330 - 80,465,481 (-)EnsemblGRCm38mm10GRCm38
MGSCv37980,328,600 - 80,359,045 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv37980,161,137 - 80,252,614 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36980,098,771 - 80,190,491 (-)NCBIMGSCv36mm8
Celera977,456,948 - 77,581,047 (-)NCBICelera
Cytogenetic Map9E1NCBI
cM Map943.99NCBI
IMPG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38675,921,114 - 76,072,662 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl675,921,114 - 76,072,678 (-)EnsemblGRCh38hg38GRCh38
GRCh37676,630,831 - 76,782,379 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36676,687,782 - 76,839,055 (-)NCBINCBI36Build 36hg18NCBI36
Build 34676,687,781 - 76,839,055NCBI
Celera677,024,393 - 77,175,569 (-)NCBICelera
Cytogenetic Map6q14.1NCBI
HuRef673,829,832 - 73,981,002 (-)NCBIHuRef
CHM1_1676,797,312 - 76,948,513 (-)NCBICHM1_1
T2T-CHM13v2.0677,097,995 - 77,249,656 (-)NCBIT2T-CHM13v2.0
Impg1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8890,123,821 - 90,269,903 (-)NCBIGRCr8
mRatBN7.2881,243,624 - 81,389,722 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl881,243,624 - 81,389,722 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx886,771,096 - 86,917,445 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0885,048,238 - 85,194,590 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0882,870,882 - 83,017,048 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0887,733,374 - 87,879,958 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl887,733,545 - 87,879,888 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0887,271,174 - 87,416,431 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4885,372,670 - 85,523,184 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1885,392,124 - 85,513,426 (-)NCBI
Celera880,965,165 - 81,108,510 (-)NCBICelera
Cytogenetic Map8q31NCBI
Impg1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555024,359,071 - 4,502,623 (-)NCBIChiLan1.0ChiLan1.0
IMPG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2595,969,739 - 96,096,728 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1693,850,408 - 93,977,427 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0673,765,927 - 73,892,918 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1677,054,893 - 77,180,578 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl677,055,866 - 77,211,813 (-)Ensemblpanpan1.1panPan2
IMPG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11237,506,511 - 37,614,683 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1237,507,525 - 37,638,250 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1237,386,127 - 37,500,315 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01238,291,434 - 38,405,667 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1238,292,450 - 38,423,152 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11237,614,190 - 37,728,097 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01237,604,075 - 37,718,507 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01237,733,410 - 37,847,683 (-)NCBIUU_Cfam_GSD_1.0
Impg1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494672,886,398 - 73,019,688 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367881,268,614 - 1,401,998 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367881,258,547 - 1,401,910 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IMPG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl189,836,050 - 89,987,397 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1189,836,013 - 89,986,530 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21100,849,075 - 100,966,111 (+)NCBISscrofa10.2Sscrofa10.2susScr3
IMPG1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.113624,694 - 783,466 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl13625,891 - 750,525 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040176,929,491 - 177,077,167 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Impg1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248193,002,718 - 3,030,007 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Impg1
5150 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:554
Count of miRNA genes:321
Interacting mature miRNAs:390
Transcripts:ENSMUST00000085289, ENSMUST00000113250, ENSMUST00000185068
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300563Pgia5_mproteoglycan induced arthritis 5 (mouse)Not determined94883105682831177Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979279863113279941Mouse
1301456Adip5_madiposity 5 (mouse)Not determined95936994693370128Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975682646114303447Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976417989110418183Mouse
12790990Tgl7_mtriglyceride 7 (mouse)95455996088559960Mouse
1301725Lifespan1_mlife span 1 (mouse)Not determined974250230108250378Mouse
14746993Manh66_mmandible shape 66 (mouse)94981404883814048Mouse
10412174Habiir4_mhyperoxic acute lung injury imprinted region 4 (mouse)Not determined96926774798701707Mouse
1301184Bdln4_mbody length 4 (mouse)Not determined95015132084151448Mouse
4141676Neogq1_mneonatal growth QTL 1 (mouse)Not determined95780504786121973Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63239711120191934Mouse
1301573Etohcta8_methanol conditioned taste aversion 8 (mouse)Not determined972859058106859205Mouse
4141224Dxmod_mdoxorubicin nephropathy modifier (mouse)Not determined49452421101406120Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963239711120191934Mouse
1301636Lith5_mlithogenic gene 5 (mouse)Not determined966089077100089175Mouse
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959897283109089068Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978522698112522808Mouse
10045638Heal29_mwound healing/regeneration 29 (mouse)Not determined967006220101006220Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975682646114303447Mouse
1300848Skull13_mskull morphology 13 (mouse)Not determined95936994693370128Mouse
11081165Psl6_mpromotion susceptibility QTL 6 (mouse)96504119195522808Mouse
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93730619798701707Mouse
1301302Pas4_mpulmonary adenoma susceptibility 4 (mouse)Not determined969121898103121973Mouse
1301621Hpic1_mhaloperidol-induced catalepsy 1 (mouse)Not determined969428566103428698Mouse
1301172Fembrs6_mfemur breaking strength 6 (mouse)Not determined95902438793024534Mouse
5491195Mobq8_mmultigenic obesity QTL 8 (mouse)Not determined95936994693370128Mouse
1301241Renf1_mrenal failure 1 (mouse)Not determined95203447899792481Mouse
10054068El8_mepilepsy 8 (mouse)Not determined972859058106859205Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63239711120191934Mouse
1301924Bmd10_mbone mineral density 10 (mouse)Not determined968779563102779705Mouse
1301803Stheal9_msoft tissue heal 9 (mouse)Not determined95902438793024534Mouse
1301611Lrnx3_mlearning contextual 3 (mouse)Not determined96214976796149881Mouse
1301290Smgd1_msubmucosal gland distribution 1 (mouse)Not determined96583105686577967Mouse
10043877Adip21_madiposity 21 (mouse)Not determined95643910890439255Mouse
1357610Vtbt8_mvertebral trabecular bone trait 8 (mouse)Not determined968779563102779705Mouse
1301869Tbbmd4_mtotal body bone mineral density 4 (mouse)Not determined976024387101406120Mouse
1300716Cd4ts4_mCD4 T cell subset 4 (mouse)Not determined94883105682831177Mouse

Markers in Region
Impg1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38980,314,066 - 80,314,217UniSTSGRCm38
MGSCv37980,161,873 - 80,162,024UniSTSGRCm37
Celera977,457,666 - 77,457,817UniSTS
Cytogenetic Map9E1UniSTS
cM Map942.5UniSTS
MHAa52b7.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38980,444,042 - 80,444,230UniSTSGRCm38
MGSCv37980,337,649 - 80,337,837UniSTSGRCm37
Celera977,559,429 - 77,559,617UniSTS
Cytogenetic Map9E1UniSTS
cM Map942.5UniSTS
Whitehead_YAC9 UniSTS
D9Mit343  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38980,463,139 - 80,463,256UniSTSGRCm38
MGSCv37980,356,746 - 80,356,863UniSTSGRCm37
Celera977,578,760 - 77,578,867UniSTS
Cytogenetic Map9E1UniSTS
cM Map943.0UniSTS
Whitehead Genetic941.5UniSTS
Whitehead_YAC9 UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000085289   ⟹   ENSMUSP00000082395
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl980,220,612 - 80,347,491 (-)Ensembl
GRCm38.p6 Ensembl980,313,330 - 80,465,438 (-)Ensembl
Ensembl Acc Id: ENSMUST00000113250   ⟹   ENSMUSP00000108876
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl980,221,277 - 80,347,534 (-)Ensembl
GRCm38.p6 Ensembl980,313,995 - 80,465,481 (-)Ensembl
Ensembl Acc Id: ENSMUST00000185068   ⟹   ENSMUSP00000139151
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl980,290,817 - 80,347,491 (-)Ensembl
GRCm38.p6 Ensembl980,383,535 - 80,465,438 (-)Ensembl
RefSeq Acc Id: NM_022016   ⟹   NP_071299
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39980,220,612 - 80,347,491 (-)NCBI
GRCm38980,313,330 - 80,465,438 (-)NCBI
MGSCv37980,161,137 - 80,252,614 (-)RGD
Celera977,456,958 - 77,581,047 (-)NCBI
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006511328   ⟹   XP_006511391
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39980,215,467 - 80,347,707 (-)NCBI
GRCm38980,312,773 - 80,465,654 (-)NCBI
Sequence:
RefSeq Acc Id: NP_071299   ⟸   NM_022016
- Peptide Label: precursor
- UniProtKB: Q9ES62 (UniProtKB/Swiss-Prot),   Q9CTP8 (UniProtKB/Swiss-Prot),   Q9ET31 (UniProtKB/Swiss-Prot),   Q8R1W8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006511391   ⟸   XM_006511328
- Peptide Label: isoform X1
- UniProtKB: Q9ES62 (UniProtKB/Swiss-Prot),   Q9CTP8 (UniProtKB/Swiss-Prot),   Q9ET31 (UniProtKB/Swiss-Prot),   Q8R1W8 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000082395   ⟸   ENSMUST00000085289
Ensembl Acc Id: ENSMUSP00000108876   ⟸   ENSMUST00000113250
Ensembl Acc Id: ENSMUSP00000139151   ⟸   ENSMUST00000185068
Protein Domains
SEA

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8R1W8-F1-model_v2 AlphaFold Q8R1W8 1-798 view protein structure

Promoters
RGD ID:8670310
Promoter ID:EPDNEW_M13185
Type:initiation region
Name:Impg1_1
Description:Mus musculus interphotoreceptor matrix proteoglycan 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38980,465,418 - 80,465,478EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1926876 AgrOrtholog
Ensembl Genes ENSMUSG00000032343 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000085289.12 UniProtKB/Swiss-Prot
  ENSMUST00000113250 ENTREZGENE
  ENSMUST00000113250.10 UniProtKB/Swiss-Prot
  ENSMUST00000185068.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.960 UniProtKB/Swiss-Prot
InterPro IMPG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SEA_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SEA_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:63859 UniProtKB/Swiss-Prot
MGD MGI:1926876 ENTREZGENE
NCBI Gene 63859 ENTREZGENE
PANTHER INTERPHOTORECEPTOR MATRIX PROTEOGLYCAN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12199 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SEA UniProtKB/Swiss-Prot
PhenoGen Impg1 PhenoGen
PROSITE SEA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SEA UniProtKB/Swiss-Prot
Superfamily-SCOP SSF82671 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A140T8V8_MOUSE UniProtKB/TrEMBL
  IMPG1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q9CTP8 ENTREZGENE
  Q9ES62 ENTREZGENE
  Q9ET31 ENTREZGENE
UniProt Secondary Q9CTP8 UniProtKB/Swiss-Prot
  Q9ES62 UniProtKB/Swiss-Prot
  Q9ET31 UniProtKB/Swiss-Prot