Clasp2 (CLIP associating protein 2) - Rat Genome Database

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Gene: Clasp2 (CLIP associating protein 2) Mus musculus
Analyze
Symbol: Clasp2
Name: CLIP associating protein 2
RGD ID: 736878
MGI Page MGI
Description: Exhibits microtubule binding activity. Involved in cell migration; establishment or maintenance of cell polarity; and negative regulation of microtubule depolymerization. Localizes to Golgi apparatus; cell leading edge; and microtubule cytoskeleton. Predicted to colocalize with focal adhesion. Is expressed in early conceptus; nervous system; and oocyte. Orthologous to human CLASP2 (cytoplasmic linker associated protein 2); INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; 2,3',4,4',5-Pentachlorobiphenyl.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 1500004F14Rik; 8030404L10Rik; C77448; CL; CLA; CLASP; CLASP2alpha; CLASP2beta; CLASP2gamma; CLIP-associating protein 2; CLIP-associating protein CLASP2; cytoplasmic linker-associated protein 2; mKIAA0627
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399113,567,776 - 113,748,765 (+)NCBIGRCm39mm39
GRCm39 Ensembl9113,570,541 - 113,748,750 (+)Ensembl
GRCm389113,740,077 - 113,919,697 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9113,741,473 - 113,919,682 (+)EnsemblGRCm38mm10GRCm38
MGSCv379113,650,591 - 113,828,815 (+)NCBIGRCm37mm9NCBIm37
MGSCv369113,661,284 - 113,767,152 (+)NCBImm8
Celera9113,450,233 - 113,629,162 (+)NCBICelera
Cytogenetic Map9F3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
cell division  (IEA)
cell migration  (IMP)
cellular response to insulin stimulus  (ISO)
establishment of mitotic spindle localization  (IBA)
establishment or maintenance of cell polarity  (IMP)
exit from mitosis  (ISO)
Golgi organization  (ISO)
meiotic cell cycle  (IEA)
microtubule anchoring  (ISO)
microtubule cytoskeleton organization  (IBA,ISO)
microtubule nucleation  (ISO)
microtubule organizing center organization  (ISO)
mitotic spindle assembly  (IBA)
mitotic spindle organization  (ISO)
negative regulation of focal adhesion assembly  (ISO)
negative regulation of microtubule depolymerization  (IDA,IMP,ISO)
negative regulation of stress fiber assembly  (ISO)
negative regulation of wound healing, spreading of epidermal cells  (ISO)
platelet-derived growth factor receptor-beta signaling pathway  (ISO)
positive regulation of basement membrane assembly involved in embryonic body morphogenesis  (ISO)
positive regulation of epithelial cell migration  (ISO)
positive regulation of exocytosis  (ISO)
positive regulation of extracellular matrix disassembly  (ISO)
positive regulation of protein localization to membrane  (ISO)
protein localization to plasma membrane  (ISO)
regulation of actin cytoskeleton organization  (ISO)
regulation of axon extension  (ISO)
regulation of epithelial to mesenchymal transition  (ISO)
regulation of gastrulation  (ISO)
regulation of microtubule polymerization  (ISO)
regulation of microtubule polymerization or depolymerization  (ISO)
regulation of microtubule-based process  (ISO)
vesicle targeting  (ISO)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11544199   PMID:12465718   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273  
PMID:15345747   PMID:15489334   PMID:15741177   PMID:16123238   PMID:16141072   PMID:16141073   PMID:16452087   PMID:16512683   PMID:16914514   PMID:17113391   PMID:18854161   PMID:21267068  
PMID:21873635   PMID:22421546   PMID:22851317   PMID:22922362   PMID:22992739   PMID:23035100   PMID:23055939   PMID:23084744   PMID:24211587   PMID:24368809   PMID:24520051   PMID:25589673  
PMID:26496610   PMID:26627310   PMID:27565344   PMID:28069833   PMID:28285824   PMID:28550165   PMID:28671696   PMID:30196744   PMID:30995482   PMID:31040226   PMID:32325033  


Genomics

Comparative Map Data
Clasp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399113,567,776 - 113,748,765 (+)NCBIGRCm39mm39
GRCm39 Ensembl9113,570,541 - 113,748,750 (+)Ensembl
GRCm389113,740,077 - 113,919,697 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9113,741,473 - 113,919,682 (+)EnsemblGRCm38mm10GRCm38
MGSCv379113,650,591 - 113,828,815 (+)NCBIGRCm37mm9NCBIm37
MGSCv369113,661,284 - 113,767,152 (+)NCBImm8
Celera9113,450,233 - 113,629,162 (+)NCBICelera
Cytogenetic Map9F3NCBI
CLASP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl333,496,245 - 33,718,356 (-)EnsemblGRCh38hg38GRCh38
GRCh38333,496,245 - 33,718,356 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37333,537,737 - 33,759,746 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36333,512,741 - 33,734,852 (-)NCBINCBI36hg18NCBI36
Build 34333,512,741 - 33,734,852NCBI
Celera333,481,199 - 33,702,919 (-)NCBI
Cytogenetic Map3p22.3NCBI
HuRef333,478,162 - 33,700,169 (-)NCBIHuRef
CHM1_1333,487,717 - 33,709,704 (-)NCBICHM1_1
Clasp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28113,677,345 - 113,859,957 (+)NCBI
Rnor_6.0 Ensembl8122,003,916 - 122,185,495 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.08122,003,719 - 122,185,495 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08121,317,262 - 121,499,025 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48118,454,426 - 118,562,702 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18118,473,880 - 118,582,155 (+)NCBI
Celera8112,998,712 - 113,106,880 (+)NCBICelera
Cytogenetic Map8q32NCBI
Clasp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955421767,210 - 897,457 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955421767,648 - 957,160 (-)NCBIChiLan1.0ChiLan1.0
CLASP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1333,718,761 - 33,938,773 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl333,721,153 - 33,938,560 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0333,418,300 - 33,640,185 (-)NCBIMhudiblu_PPA_v0panPan3
CLASP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1233,261,778 - 3,423,698 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl233,246,522 - 3,421,716 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha233,290,238 - 3,467,789 (+)NCBI
ROS_Cfam_1.0233,502,417 - 3,680,553 (+)NCBI
UMICH_Zoey_3.1233,341,844 - 3,518,555 (+)NCBI
UNSW_CanFamBas_1.0233,467,897 - 3,645,453 (+)NCBI
UU_Cfam_GSD_1.0233,441,174 - 3,619,026 (+)NCBI
Clasp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118190,617,726 - 190,801,913 (-)NCBI
SpeTri2.0NW_00493647323,756,291 - 23,940,966 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLASP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1319,305,180 - 19,510,585 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11319,305,430 - 19,510,589 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21320,890,430 - 21,096,396 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CLASP2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11577,969,587 - 78,186,843 (-)NCBI
ChlSab1.1 Ensembl1577,968,860 - 78,186,601 (-)Ensembl
Vero_WHO_p1.0NW_02366604151,352,579 - 51,569,107 (-)NCBI
Clasp2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478811,441,840 - 11,657,515 (-)NCBI

Position Markers
BB249004  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389113,842,715 - 113,842,810UniSTSGRCm38
MGSCv379113,751,833 - 113,751,928UniSTSGRCm37
Celera9113,552,046 - 113,552,141UniSTS
Cytogenetic Map9F2UniSTS
Whitehead/MRC_RH91129.43UniSTS
AU022707  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389113,836,570 - 113,836,784UniSTSGRCm38
MGSCv379113,745,688 - 113,745,902UniSTSGRCm37
Celera9113,545,853 - 113,546,067UniSTS
Cytogenetic Map9F2UniSTS
Whitehead/MRC_RH91129.43UniSTS
D9Mit246  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389113,903,371 - 113,903,508UniSTSGRCm38
MGSCv379113,812,489 - 113,812,626UniSTSGRCm37
Celera9113,612,897 - 113,613,034UniSTS
Cytogenetic Map9F2UniSTS
cM Map961.0UniSTS
Whitehead Genetic960.1UniSTS
RH126165  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389113,900,757 - 113,900,996UniSTSGRCm38
MGSCv379113,809,875 - 113,810,114UniSTSGRCm37
Celera9113,610,283 - 113,610,522UniSTS
Cytogenetic Map9F2UniSTS
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975775364114474379Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975775364114474379Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981798268115798392Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982910333116910428Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982910333116910428Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982910333116910428Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984528818118528921Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986230401120230530Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986239845120289624Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986748483120748483Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989977005118938021Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9101060861124595110Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9102000187124595110Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9102000187124595110Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103289445124595110Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103289445124595110Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103289445124595110Mouse
13515058Adip20d_madiposity 20d (mouse)9108915010118915010Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1245
Count of miRNA genes:514
Interacting mature miRNAs:593
Transcripts:ENSMUST00000111838, ENSMUST00000163895, ENSMUST00000166734
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001081960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001114347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001286599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001286600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001286601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001286602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001286603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_029633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_379881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB093252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC107803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC167246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI529145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ276961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK005146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK034560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK038107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK043551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK142795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC030468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC117963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC117964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC131791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC131792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC141415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ052159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000111838   ⟹   ENSMUSP00000107469
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9113,812,586 - 113,919,682 (+)Ensembl
RefSeq Acc Id: ENSMUST00000163895   ⟹   ENSMUSP00000128460
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9113,812,600 - 113,918,136 (+)Ensembl
RefSeq Acc Id: ENSMUST00000166734   ⟹   ENSMUSP00000130201
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9113,812,598 - 113,918,190 (+)Ensembl
RefSeq Acc Id: ENSMUST00000213663   ⟹   ENSMUSP00000150145
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9113,741,473 - 113,918,797 (+)Ensembl
RefSeq Acc Id: ENSMUST00000213902
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9113,793,326 - 113,817,655 (+)Ensembl
RefSeq Acc Id: ENSMUST00000213966
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9113,793,335 - 113,842,902 (+)Ensembl
RefSeq Acc Id: ENSMUST00000214522   ⟹   ENSMUSP00000149670
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9113,812,598 - 113,918,190 (+)Ensembl
RefSeq Acc Id: ENSMUST00000214860
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9113,812,586 - 113,855,729 (+)Ensembl
RefSeq Acc Id: ENSMUST00000215022   ⟹   ENSMUSP00000149685
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9113,812,598 - 113,918,190 (+)Ensembl
RefSeq Acc Id: ENSMUST00000216280
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9113,741,732 - 113,749,508 (+)Ensembl
RefSeq Acc Id: ENSMUST00000216817   ⟹   ENSMUSP00000150741
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9113,741,512 - 113,842,897 (+)Ensembl
RefSeq Acc Id: NM_001081960   ⟹   NP_001075429
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,641,654 - 113,748,765 (+)NCBI
GRCm389113,812,586 - 113,919,697 (+)NCBI
MGSCv379113,650,591 - 113,828,815 (+)RGD
Celera9113,450,233 - 113,629,162 (+)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001114347   ⟹   NP_001107819
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,570,541 - 113,748,765 (+)NCBI
GRCm389113,741,473 - 113,919,697 (+)NCBI
MGSCv379113,650,591 - 113,828,815 (+)RGD
Celera9113,450,233 - 113,629,162 (+)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001286599   ⟹   NP_001273528
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,570,541 - 113,671,971 (+)NCBI
GRCm389113,741,473 - 113,842,903 (+)NCBI
Celera9113,450,233 - 113,629,162 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001286600   ⟹   NP_001273529
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,641,654 - 113,748,765 (+)NCBI
GRCm389113,812,586 - 113,919,697 (+)NCBI
Celera9113,450,233 - 113,629,162 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001286601   ⟹   NP_001273530
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,641,654 - 113,748,765 (+)NCBI
GRCm389113,812,586 - 113,919,697 (+)NCBI
Celera9113,450,233 - 113,629,162 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001286602   ⟹   NP_001273531
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,641,654 - 113,748,765 (+)NCBI
GRCm389113,812,586 - 113,919,697 (+)NCBI
Celera9113,450,233 - 113,629,162 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001286603   ⟹   NP_001273532
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,622,398 - 113,671,971 (+)NCBI
GRCm389113,793,330 - 113,842,903 (+)NCBI
Celera9113,450,233 - 113,629,162 (+)NCBI
Sequence:
RefSeq Acc Id: NM_029633   ⟹   NP_083909
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,641,654 - 113,748,765 (+)NCBI
GRCm389113,812,586 - 113,919,697 (+)NCBI
MGSCv379113,650,591 - 113,828,815 (+)RGD
Celera9113,450,233 - 113,629,162 (+)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006512384   ⟹   XP_006512447
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,567,776 - 113,748,757 (+)NCBI
GRCm389113,740,077 - 113,919,697 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006512385   ⟹   XP_006512448
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,567,776 - 113,748,757 (+)NCBI
GRCm389113,740,077 - 113,919,697 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006512386   ⟹   XP_006512449
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,567,776 - 113,748,757 (+)NCBI
GRCm389113,740,077 - 113,919,697 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006512387   ⟹   XP_006512450
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,567,776 - 113,748,757 (+)NCBI
GRCm389113,740,077 - 113,919,697 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006512388   ⟹   XP_006512451
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,567,776 - 113,748,757 (+)NCBI
GRCm389113,740,077 - 113,919,697 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006512389   ⟹   XP_006512452
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,567,776 - 113,748,757 (+)NCBI
GRCm389113,740,077 - 113,919,697 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006512390   ⟹   XP_006512453
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,567,776 - 113,748,757 (+)NCBI
GRCm389113,740,077 - 113,919,697 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006512391   ⟹   XP_006512454
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,567,776 - 113,748,757 (+)NCBI
GRCm389113,740,077 - 113,919,697 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006512392   ⟹   XP_006512455
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,567,776 - 113,748,757 (+)NCBI
GRCm389113,740,077 - 113,919,697 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006512393   ⟹   XP_006512456
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,567,776 - 113,748,757 (+)NCBI
GRCm389113,740,077 - 113,919,697 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006512394   ⟹   XP_006512457
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,567,776 - 113,748,757 (+)NCBI
GRCm389113,740,077 - 113,919,697 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006512395   ⟹   XP_006512458
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,639,669 - 113,748,757 (+)NCBI
GRCm389113,810,601 - 113,919,697 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006512396   ⟹   XP_006512459
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,621,657 - 113,748,757 (+)NCBI
GRCm389113,792,589 - 113,919,697 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006512397   ⟹   XP_006512460
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,567,776 - 113,748,757 (+)NCBI
GRCm389113,740,077 - 113,919,697 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030244699   ⟹   XP_030100559
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,567,776 - 113,748,757 (+)NCBI
GRCm389113,740,077 - 113,919,697 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030244700   ⟹   XP_030100560
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,567,776 - 113,748,757 (+)NCBI
GRCm389113,740,077 - 113,919,697 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030244701   ⟹   XP_030100561
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,567,776 - 113,748,757 (+)NCBI
GRCm389113,740,077 - 113,919,697 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030244702   ⟹   XP_030100562
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,567,776 - 113,748,757 (+)NCBI
GRCm389113,740,077 - 113,919,697 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030244703   ⟹   XP_030100563
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,567,776 - 113,748,757 (+)NCBI
GRCm389113,740,077 - 113,919,697 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030244704   ⟹   XP_030100564
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,567,776 - 113,748,757 (+)NCBI
GRCm389113,740,077 - 113,919,697 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030244705   ⟹   XP_030100565
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,570,514 - 113,748,757 (+)NCBI
GRCm389113,741,446 - 113,919,697 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030244707   ⟹   XP_030100567
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,570,517 - 113,748,757 (+)NCBI
GRCm389113,741,449 - 113,919,697 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036155381   ⟹   XP_036011274
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,567,776 - 113,748,757 (+)NCBI
RefSeq Acc Id: XM_036155382   ⟹   XP_036011275
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,567,776 - 113,748,757 (+)NCBI
RefSeq Acc Id: XM_036155383   ⟹   XP_036011276
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,567,776 - 113,748,757 (+)NCBI
RefSeq Acc Id: XM_036155384   ⟹   XP_036011277
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,567,776 - 113,748,757 (+)NCBI
RefSeq Acc Id: XM_036155385   ⟹   XP_036011278
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,567,776 - 113,748,757 (+)NCBI
RefSeq Acc Id: XM_036155386   ⟹   XP_036011279
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,567,776 - 113,748,757 (+)NCBI
RefSeq Acc Id: XM_036155387   ⟹   XP_036011280
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,567,776 - 113,748,757 (+)NCBI
RefSeq Acc Id: XM_036155388   ⟹   XP_036011281
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,567,776 - 113,748,757 (+)NCBI
RefSeq Acc Id: XM_036155389   ⟹   XP_036011282
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,567,776 - 113,748,757 (+)NCBI
RefSeq Acc Id: XM_036155390   ⟹   XP_036011283
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,567,776 - 113,748,757 (+)NCBI
RefSeq Acc Id: XM_036155391   ⟹   XP_036011284
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,595,636 - 113,748,757 (+)NCBI
RefSeq Acc Id: XM_036155392   ⟹   XP_036011285
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,621,657 - 113,748,757 (+)NCBI
RefSeq Acc Id: XM_036155393   ⟹   XP_036011286
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,639,669 - 113,748,757 (+)NCBI
RefSeq Acc Id: XM_036155394   ⟹   XP_036011287
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,621,657 - 113,748,757 (+)NCBI
RefSeq Acc Id: XM_036155395   ⟹   XP_036011288
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,621,657 - 113,748,757 (+)NCBI
RefSeq Acc Id: XM_036155396   ⟹   XP_036011289
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,621,657 - 113,748,757 (+)NCBI
RefSeq Acc Id: XM_036155397   ⟹   XP_036011290
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,639,669 - 113,748,757 (+)NCBI
RefSeq Acc Id: XM_036155398   ⟹   XP_036011291
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,621,657 - 113,748,757 (+)NCBI
RefSeq Acc Id: XM_036155399   ⟹   XP_036011292
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,621,657 - 113,748,757 (+)NCBI
RefSeq Acc Id: XM_036155400   ⟹   XP_036011293
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,639,669 - 113,748,757 (+)NCBI
RefSeq Acc Id: XM_036155401   ⟹   XP_036011294
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,621,657 - 113,748,757 (+)NCBI
RefSeq Acc Id: XM_036155402   ⟹   XP_036011295
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,621,657 - 113,748,757 (+)NCBI
RefSeq Acc Id: XR_379881
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,567,776 - 113,748,757 (+)NCBI
GRCm389113,740,077 - 113,919,697 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001075429 (Get FASTA)   NCBI Sequence Viewer  
  NP_001107819 (Get FASTA)   NCBI Sequence Viewer  
  NP_001273528 (Get FASTA)   NCBI Sequence Viewer  
  NP_001273529 (Get FASTA)   NCBI Sequence Viewer  
  NP_001273530 (Get FASTA)   NCBI Sequence Viewer  
  NP_001273531 (Get FASTA)   NCBI Sequence Viewer  
  NP_001273532 (Get FASTA)   NCBI Sequence Viewer  
  NP_083909 (Get FASTA)   NCBI Sequence Viewer  
  XP_006512447 (Get FASTA)   NCBI Sequence Viewer  
  XP_006512448 (Get FASTA)   NCBI Sequence Viewer  
  XP_006512449 (Get FASTA)   NCBI Sequence Viewer  
  XP_006512450 (Get FASTA)   NCBI Sequence Viewer  
  XP_006512451 (Get FASTA)   NCBI Sequence Viewer  
  XP_006512452 (Get FASTA)   NCBI Sequence Viewer  
  XP_006512453 (Get FASTA)   NCBI Sequence Viewer  
  XP_006512454 (Get FASTA)   NCBI Sequence Viewer  
  XP_006512455 (Get FASTA)   NCBI Sequence Viewer  
  XP_006512456 (Get FASTA)   NCBI Sequence Viewer  
  XP_006512457 (Get FASTA)   NCBI Sequence Viewer  
  XP_006512458 (Get FASTA)   NCBI Sequence Viewer  
  XP_006512459 (Get FASTA)   NCBI Sequence Viewer  
  XP_006512460 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100559 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100560 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100561 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100562 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100563 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100564 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100565 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100567 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011274 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011275 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011276 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011277 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011278 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011279 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011280 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011281 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011282 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011283 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011284 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011285 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011286 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011287 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011288 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011289 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011290 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011291 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011292 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011293 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011294 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011295 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH26688 (Get FASTA)   NCBI Sequence Viewer  
  AAH30468 (Get FASTA)   NCBI Sequence Viewer  
  AAI17964 (Get FASTA)   NCBI Sequence Viewer  
  AAI17965 (Get FASTA)   NCBI Sequence Viewer  
  AAI31792 (Get FASTA)   NCBI Sequence Viewer  
  AAI31793 (Get FASTA)   NCBI Sequence Viewer  
  AAI41416 (Get FASTA)   NCBI Sequence Viewer  
  BAB23842 (Get FASTA)   NCBI Sequence Viewer  
  BAC28754 (Get FASTA)   NCBI Sequence Viewer  
  BAC31579 (Get FASTA)   NCBI Sequence Viewer  
  BAC41436 (Get FASTA)   NCBI Sequence Viewer  
  BAE28704 (Get FASTA)   NCBI Sequence Viewer  
  CAC35161 (Get FASTA)   NCBI Sequence Viewer  
  EDL08947 (Get FASTA)   NCBI Sequence Viewer  
  Q8BRT1 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001075429   ⟸   NM_001081960
- Peptide Label: isoform b
- UniProtKB: Q08EB6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_083909   ⟸   NM_029633
- Peptide Label: isoform a
- UniProtKB: E9Q8N5 (UniProtKB/TrEMBL),   Q08EB6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001107819   ⟸   NM_001114347
- Peptide Label: isoform c
- Sequence:
RefSeq Acc Id: NP_001273528   ⟸   NM_001286599
- Peptide Label: isoform d
- UniProtKB: Q8BRT1 (UniProtKB/Swiss-Prot),   Q8BSE7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001273532   ⟸   NM_001286603
- Peptide Label: isoform h
- UniProtKB: Q8BRT1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001273530   ⟸   NM_001286601
- Peptide Label: isoform f
- UniProtKB: Q8BRT1 (UniProtKB/Swiss-Prot),   A2RRR3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001273529   ⟸   NM_001286600
- Peptide Label: isoform e
- UniProtKB: Q8BRT1 (UniProtKB/Swiss-Prot),   Q08EB5 (UniProtKB/TrEMBL),   Q3UF57 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001273531   ⟸   NM_001286602
- Peptide Label: isoform g
- UniProtKB: Q8BRT1 (UniProtKB/Swiss-Prot),   B9EJA4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006512447   ⟸   XM_006512384
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006512448   ⟸   XM_006512385
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006512450   ⟸   XM_006512387
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006512454   ⟸   XM_006512391
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_006512455   ⟸   XM_006512392
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_006512453   ⟸   XM_006512390
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_006512456   ⟸   XM_006512393
- Peptide Label: isoform X14
- Sequence:
RefSeq Acc Id: XP_006512449   ⟸   XM_006512386
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006512451   ⟸   XM_006512388
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006512452   ⟸   XM_006512389
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_006512457   ⟸   XM_006512394
- Peptide Label: isoform X18
- Sequence:
RefSeq Acc Id: XP_006512460   ⟸   XM_006512397
- Peptide Label: isoform X22
- Sequence:
RefSeq Acc Id: XP_006512459   ⟸   XM_006512396
- Peptide Label: isoform X32
- Sequence:
RefSeq Acc Id: XP_006512458   ⟸   XM_006512395
- Peptide Label: isoform X31
- Sequence:
RefSeq Acc Id: XP_030100560   ⟸   XM_030244700
- Peptide Label: isoform X17
RefSeq Acc Id: XP_030100559   ⟸   XM_030244699
- Peptide Label: isoform X10
RefSeq Acc Id: XP_030100561   ⟸   XM_030244701
- Peptide Label: isoform X24
RefSeq Acc Id: XP_030100562   ⟸   XM_030244702
- Peptide Label: isoform X25
RefSeq Acc Id: XP_030100563   ⟸   XM_030244703
- Peptide Label: isoform X26
RefSeq Acc Id: XP_030100564   ⟸   XM_030244704
- Peptide Label: isoform X27
RefSeq Acc Id: XP_030100565   ⟸   XM_030244705
- Peptide Label: isoform X29
RefSeq Acc Id: XP_030100567   ⟸   XM_030244707
- Peptide Label: isoform X30
RefSeq Acc Id: ENSMUSP00000107469   ⟸   ENSMUST00000111838
RefSeq Acc Id: ENSMUSP00000128460   ⟸   ENSMUST00000163895
RefSeq Acc Id: ENSMUSP00000150741   ⟸   ENSMUST00000216817
RefSeq Acc Id: ENSMUSP00000130201   ⟸   ENSMUST00000166734
RefSeq Acc Id: ENSMUSP00000150145   ⟸   ENSMUST00000213663
RefSeq Acc Id: ENSMUSP00000149685   ⟸   ENSMUST00000215022
RefSeq Acc Id: ENSMUSP00000149670   ⟸   ENSMUST00000214522
RefSeq Acc Id: XP_036011275   ⟸   XM_036155382
- Peptide Label: isoform X7
RefSeq Acc Id: XP_036011274   ⟸   XM_036155381
- Peptide Label: isoform X6
RefSeq Acc Id: XP_036011278   ⟸   XM_036155385
- Peptide Label: isoform X16
RefSeq Acc Id: XP_036011281   ⟸   XM_036155388
- Peptide Label: isoform X21
RefSeq Acc Id: XP_036011276   ⟸   XM_036155383
- Peptide Label: isoform X13
RefSeq Acc Id: XP_036011282   ⟸   XM_036155389
- Peptide Label: isoform X23
RefSeq Acc Id: XP_036011277   ⟸   XM_036155384
- Peptide Label: isoform X15
RefSeq Acc Id: XP_036011279   ⟸   XM_036155386
- Peptide Label: isoform X19
RefSeq Acc Id: XP_036011280   ⟸   XM_036155387
- Peptide Label: isoform X20
RefSeq Acc Id: XP_036011283   ⟸   XM_036155390
- Peptide Label: isoform X28
RefSeq Acc Id: XP_036011284   ⟸   XM_036155391
- Peptide Label: isoform X30
RefSeq Acc Id: XP_036011287   ⟸   XM_036155394
- Peptide Label: isoform X35
RefSeq Acc Id: XP_036011292   ⟸   XM_036155399
- Peptide Label: isoform X40
RefSeq Acc Id: XP_036011289   ⟸   XM_036155396
- Peptide Label: isoform X37
RefSeq Acc Id: XP_036011294   ⟸   XM_036155401
- Peptide Label: isoform X42
RefSeq Acc Id: XP_036011285   ⟸   XM_036155392
- Peptide Label: isoform X33
RefSeq Acc Id: XP_036011288   ⟸   XM_036155395
- Peptide Label: isoform X36
RefSeq Acc Id: XP_036011291   ⟸   XM_036155398
- Peptide Label: isoform X39
RefSeq Acc Id: XP_036011295   ⟸   XM_036155402
- Peptide Label: isoform X43
RefSeq Acc Id: XP_036011286   ⟸   XM_036155393
- Peptide Label: isoform X34
RefSeq Acc Id: XP_036011290   ⟸   XM_036155397
- Peptide Label: isoform X38
RefSeq Acc Id: XP_036011293   ⟸   XM_036155400
- Peptide Label: isoform X41
Protein Domains
TOG

Promoters
RGD ID:6844329
Promoter ID:MM_KWN:59003
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:ENSMUST00000035089,   ENSMUST00000111838,   NM_001081960,   NM_029633,   UC009RWU.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369113,721,126 - 113,721,626 (+)MPROMDB
RGD ID:8671086
Promoter ID:EPDNEW_M13573
Type:multiple initiation site
Name:Clasp2_1
Description:Mus musculus CLIP associating protein 2 , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13574  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389113,793,331 - 113,793,391EPDNEW
RGD ID:8671088
Promoter ID:EPDNEW_M13574
Type:initiation region
Name:Clasp2_2
Description:Mus musculus CLIP associating protein 2 , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13573  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389113,812,583 - 113,812,643EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1923749 AgrOrtholog
Ensembl Genes ENSMUSG00000033392 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000107469 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000128460 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000130201 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000149670 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000149685 UniProtKB/TrEMBL
  ENSMUSP00000150145 UniProtKB/TrEMBL
  ENSMUSP00000150741 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000111838 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000163895 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000166734 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000213663 UniProtKB/TrEMBL
  ENSMUST00000213966 ENTREZGENE
  ENSMUST00000214522 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000215022 UniProtKB/TrEMBL
  ENSMUST00000216817 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CLASP_N_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HEAT_type_2 UniProtKB/TrEMBL
  TOG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:76499 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1923749 ENTREZGENE
NCBI Gene 76499 ENTREZGENE
Pfam CLASP_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Clasp2 PhenoGen
PROSITE HEAT_REPEAT UniProtKB/TrEMBL
SMART TOG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1L1SRY3_MOUSE UniProtKB/TrEMBL
  A0A1L1ST22_MOUSE UniProtKB/TrEMBL
  A2RRR3 ENTREZGENE, UniProtKB/TrEMBL
  B9EJA4 ENTREZGENE, UniProtKB/TrEMBL
  CLAP2_MOUSE UniProtKB/Swiss-Prot
  E9Q8N5 ENTREZGENE, UniProtKB/TrEMBL
  F7DCH5_MOUSE UniProtKB/TrEMBL
  Q08EB5 ENTREZGENE, UniProtKB/TrEMBL
  Q08EB6 ENTREZGENE, UniProtKB/TrEMBL
  Q3UF57 ENTREZGENE, UniProtKB/TrEMBL
  Q8BRT1 ENTREZGENE
  Q8BSE7 ENTREZGENE, UniProtKB/TrEMBL
  Q8R337_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q8CHE3 UniProtKB/Swiss-Prot
  Q99JI3 UniProtKB/Swiss-Prot
  Q9DB80 UniProtKB/Swiss-Prot