B4galt1 (UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: B4galt1 (UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1) Mus musculus
Analyze
Symbol: B4galt1
Name: UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1
RGD ID: 10640
MGI Page MGI
Description: Enables UDP-galactosyltransferase activity; cytoskeletal protein binding activity; and laminin binding activity involved in cell-matrix adhesion. Involved in cell-matrix adhesion. Acts upstream of or within several processes, including binding activity of sperm to zona pellucida; regulation of epithelial cell proliferation; and tube morphogenesis. Located in Golgi apparatus; cell surface; and plasma membrane. Part of protein-containing complex. Is expressed in several structures, including alimentary system; genitourinary system; hemolymphoid system; liver; and nervous system. Used to study IgA glomerulonephritis and endocrine system disease. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation and congenital disorder of glycosylation type IId. Orthologous to human B4GALT1 (beta-1,4-galactosyltransferase 1).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: AA407245; B-1,4-GalT; B-1,4-GalT1; b1,4-Galactosyltransferase I; b4Gal-T1; beta 1,4-Galactosyltransferase I; beta-1,4-galactosyltransferase; beta-1,4-galactosyltransferase (short form); beta-1,4-galactosyltransferase 1; beta-1,4-GalT; beta-1,4-GalT1; beta-1,4-GalTase 1; beta-N-acetylglucosaminyl-glycolipid beta-1,4-galactosyltransferase; beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase; beta4Gal-T1; Ga; galactosyltransferase 2 beta 1, 4; GalT; Ggtb; Ggtb2; glycoprotein galactosyltransferase beta 1, 4; N-acetyllactosamine synthase; nal synthase; neolactotriaosylceramide beta-1,4-galactosyltransferase; UDP-Gal:beta-GlcNAc beta-1,4-galactosyltransferase 1; UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 1; UDP-galactose:beta-N-acetylglucosamine beta-1,4-galactosyltransferase 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39440,804,602 - 40,855,711 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl440,804,602 - 40,854,005 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38440,804,602 - 40,853,984 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl440,804,602 - 40,854,005 (-)Ensemblmm10GRCm38
MGSCv37440,751,635 - 40,801,031 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36440,993,273 - 41,042,669 (-)NCBIMGSCv36mm8
Celera440,465,334 - 40,514,995 (-)NCBICelera
Cytogenetic Map4A5NCBI
cM Map420.46NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(-)-demecolcine  (ISO)
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (EXP)
1-benzylpiperazine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-methoxyethanol  (ISO)
2-tert-butylhydroquinone  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (ISO)
4-nonylphenol  (ISO)
4-octylphenol  (ISO)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
acetylsalicylic acid  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (EXP,ISO)
alpha-Zearalanol  (ISO)
ammonium chloride  (ISO)
andrographolide  (ISO)
antirheumatic drug  (ISO)
Bardoxolone methyl  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (EXP)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
cadmium dichloride  (ISO)
calcitriol  (ISO)
captan  (EXP)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chrysene  (EXP)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumarin  (ISO)
cyclosporin A  (EXP)
dexamethasone  (ISO)
diazinon  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
diethylstilbestrol  (ISO)
diquat  (EXP)
dopamine  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
epoxiconazole  (EXP)
estriol  (ISO)
fenoldopam  (ISO)
fenthion  (EXP)
finasteride  (ISO)
fipronil  (ISO)
folic acid  (EXP)
folpet  (EXP)
genistein  (ISO)
gentamycin  (ISO)
glafenine  (ISO)
glycidyl methacrylate  (ISO)
ivermectin  (ISO)
keratan sulfate  (ISO)
lipopolysaccharide  (EXP)
lithium chloride  (ISO)
malathion  (ISO)
methapyrilene  (ISO)
methimazole  (ISO)
methotrexate  (EXP)
methoxychlor  (ISO)
methylseleninic acid  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
paracetamol  (EXP,ISO)
paricalcitol  (ISO)
perfluorohexanesulfonic acid  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (ISO)
phenylmercury acetate  (ISO)
phosphorus atom  (ISO)
phosphorus(.)  (ISO)
pirinixic acid  (EXP)
pregnenolone 16alpha-carbonitrile  (EXP)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP,ISO)
Soman  (ISO)
sulfadimethoxine  (ISO)
sulforaphane  (ISO)
sulindac  (ISO)
sunitinib  (ISO)
tamoxifen  (EXP)
testosterone  (EXP)
tetraphene  (EXP)
thiram  (ISO)
titanium dioxide  (EXP)
Tributyltin oxide  (EXP)
trichloroethene  (ISO)
triphenyl phosphate  (ISO)
Triptolide  (EXP)
tunicamycin  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal adenohypophysis development  (IAGP)
abnormal adrenal cortex morphology  (IAGP)
abnormal adrenal gland zona fasciculata morphology  (IAGP)
abnormal adrenal gland zona reticularis morphology  (IAGP)
abnormal branching of the mammary ductal tree  (IAGP)
abnormal enzyme/coenzyme activity  (IAGP)
abnormal epidermis stratum corneum morphology  (IAGP)
abnormal epidermis stratum granulosum morphology  (IAGP)
abnormal epidermis stratum spinosum morphology  (IAGP)
abnormal fertilization  (IAGP)
abnormal glomerular mesangium morphology  (IAGP)
abnormal IgM level  (IAGP)
abnormal intestinal epithelium morphology  (IAGP)
abnormal leukocyte physiology  (IAGP)
abnormal mammary gland growth during pregnancy  (IAGP)
abnormal milk composition  (IAGP)
abnormal neutrophil physiology  (IAGP)
abnormal physiological neovascularization  (IAGP)
abnormal proerythroblast morphology  (IAGP)
abnormal pulmonary alveolar system morphology  (IAGP)
abnormal pulmonary alveolus morphology  (IAGP)
abnormal renal glomerulus morphology  (IAGP)
abnormal small intestine crypts of Lieberkuhn morphology  (IAGP)
abnormal small intestine morphology  (IAGP)
abnormal sperm motility  (IAGP)
abnormal sperm physiology  (IAGP)
abnormal spermatogenesis  (IAGP)
acanthosis  (IAGP)
albuminuria  (IAGP)
decreased acute inflammation  (IAGP)
decreased body weight  (IAGP)
decreased circulating thyroxine level  (IAGP)
decreased erythrocyte cell number  (IAGP)
decreased hair follicle number  (IAGP)
decreased hematocrit  (IAGP)
decreased hemoglobin content  (IAGP)
decreased litter size  (IAGP)
decreased subcutaneous adipose tissue amount  (IAGP)
decreased susceptibility to type IV hypersensitivity reaction  (IAGP)
dehydration  (IAGP)
delayed wound healing  (IAGP)
dystocia  (IAGP)
enlarged spleen  (IAGP)
expanded mesangial matrix  (IAGP)
extramedullary hematopoiesis  (IAGP)
glomerulonephritis  (IAGP)
glomerulosclerosis  (IAGP)
hematuria  (IAGP)
hyperkeratosis  (IAGP)
impaired acrosome reaction  (IAGP)
impaired macrophage chemotaxis  (IAGP)
impaired neutrophil recruitment  (IAGP)
increased IgA level  (IAGP)
increased leukocyte cell number  (IAGP)
increased lymphocyte cell number  (IAGP)
increased mitotic index  (IAGP)
increased neutrophil cell number  (IAGP)
lactation failure  (IAGP)
long gestation period  (IAGP)
neonatal lethality, incomplete penetrance  (IAGP)
postnatal growth retardation  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
premature death  (IAGP)
skin lesions  (IAGP)
small adenohypophysis  (IAGP)
small adrenal glands  (IAGP)
small seminiferous tubules  (IAGP)
sparse hair  (IAGP)
thick pulmonary interalveolar septum  (IAGP)
thin skin  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Deficiency of UDP-galactose:N-acetylglucosamine beta-1,4-galactosyltransferase I causes the congenital disorder of glycosylation type IId. Hansske B, etal., J Clin Invest. 2002 Mar;109(6):725-33.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1384819   PMID:1684952   PMID:1689054   PMID:1889815   PMID:2037292   PMID:2124963   PMID:2503706   PMID:2504153   PMID:3102169   PMID:3134348   PMID:3141392   PMID:3142470  
PMID:3149531   PMID:7641815   PMID:7929205   PMID:7956920   PMID:8089187   PMID:8134355   PMID:8314795   PMID:8617793   PMID:8675223   PMID:8787759   PMID:9013935   PMID:9042426  
PMID:9108238   PMID:9155011   PMID:9374408   PMID:9588205   PMID:9813328   PMID:9828144   PMID:10349636   PMID:10381349   PMID:10409768   PMID:10580129   PMID:10611487   PMID:10922068  
PMID:11042159   PMID:11042447   PMID:11076861   PMID:11145975   PMID:11171390   PMID:11217851   PMID:11375348   PMID:11419947   PMID:11463354   PMID:11485999   PMID:11900463   PMID:12417408  
PMID:12466851   PMID:12477932   PMID:12520002   PMID:12676797   PMID:12714507   PMID:12770778   PMID:12904583   PMID:14577571   PMID:14610273   PMID:14681479   PMID:14985638   PMID:15039218  
PMID:15158676   PMID:15282149   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16412699   PMID:16602821   PMID:17255313   PMID:18212537   PMID:18287559   PMID:18511602  
PMID:18799693   PMID:19106107   PMID:19540263   PMID:20360068   PMID:21267068   PMID:21873635   PMID:22333949   PMID:23002422   PMID:23118208   PMID:24006456   PMID:25735572   PMID:26496610  
PMID:27553271   PMID:28215986   PMID:28245920   PMID:30553837   PMID:31073169   PMID:31953383   PMID:32926333   PMID:32968282   PMID:34321999   PMID:34855475   PMID:35926458   PMID:36084919  
PMID:36928041   PMID:37478628   PMID:37901252   PMID:39233353  


Genomics

Comparative Map Data
B4galt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39440,804,602 - 40,855,711 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl440,804,602 - 40,854,005 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38440,804,602 - 40,853,984 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl440,804,602 - 40,854,005 (-)Ensemblmm10GRCm38
MGSCv37440,751,635 - 40,801,031 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36440,993,273 - 41,042,669 (-)NCBIMGSCv36mm8
Celera440,465,334 - 40,514,995 (-)NCBICelera
Cytogenetic Map4A5NCBI
cM Map420.46NCBI
B4GALT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38933,104,077 - 33,185,089 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl933,100,493 - 33,167,359 (-)Ensemblhg38GRCh38
GRCh37933,104,075 - 33,167,334 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36933,100,642 - 33,157,236 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34933,100,641 - 33,157,231NCBI
Celera933,041,647 - 33,098,362 (-)NCBICelera
Cytogenetic Map9p21.1NCBI
HuRef933,068,632 - 33,125,120 (-)NCBIHuRef
CHM1_1933,110,422 - 33,167,124 (-)NCBICHM1_1
T2T-CHM13v2.0933,120,636 - 33,185,969 (-)NCBIT2T-CHM13v2.0
B4galt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8560,731,601 - 60,778,456 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl560,731,602 - 60,778,445 (-)EnsemblGRCr8
mRatBN7.2555,935,614 - 55,982,461 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl555,935,615 - 55,982,461 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx557,902,532 - 57,949,398 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0559,721,688 - 59,768,553 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0559,715,682 - 59,762,877 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0557,121,768 - 57,168,610 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl557,121,769 - 57,168,610 (-)Ensemblrn6Rnor6.0
Rnor_5.0561,653,278 - 61,700,179 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4558,196,388 - 58,243,231 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera554,547,735 - 54,594,543 (-)NCBICelera
Cytogenetic Map5q22NCBI
B4galt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554722,490,661 - 2,536,317 (+)Ensembl
ChiLan1.0NW_0049554722,490,649 - 2,536,053 (+)NCBIChiLan1.0ChiLan1.0
B4GALT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21191,435,685 - 91,492,756 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1991,441,627 - 91,498,698 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0932,889,124 - 32,945,759 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1933,697,551 - 33,754,192 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl933,691,733 - 33,754,192 (-)EnsemblpanPan2panpan1.1
B4GALT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11150,223,880 - 50,276,745 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1150,226,242 - 50,276,730 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1148,852,300 - 48,904,681 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01151,162,293 - 51,214,628 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1151,144,069 - 51,214,773 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11149,827,305 - 49,879,364 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01149,693,975 - 49,746,100 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01150,459,162 - 50,511,219 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
B4galt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947165,112,211 - 165,166,434 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365241,659,608 - 1,714,102 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365241,659,791 - 1,713,971 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
B4GALT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1033,317,305 - 33,381,285 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11033,317,295 - 33,381,285 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21037,574,201 - 37,635,284 (+)NCBISscrofa10.2Sscrofa10.2susScr3
B4GALT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11247,104,750 - 47,162,157 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1247,104,789 - 47,162,173 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366703211,002 - 21,137 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
B4galt1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473637,848,117 - 37,927,980 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473637,848,431 - 37,927,291 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
B4galt1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11117,330,343 - 117,380,818 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in B4galt1
2664 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:1023
Count of miRNA genes:594
Interacting mature miRNAs:696
Transcripts:ENSMUST00000030121, ENSMUST00000108096
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301203Alcp8_malcohol preference locus 8 (mouse)Not determined41739516051395290Mouse
1301586Stheal3_msoft tissue heal 3 (mouse)Not determined42865844262658566Mouse
10401115Pgia35_mproteoglycan induced arthritis 35 (mouse)Not determined41256237746562509Mouse
39128211Lwq22_mliver weight QTL 22 (mouse)41789261688982216Mouse
1558992Ses8_msalmonella enteritidis susceptibility 8 (mouse)Not determined4868324042683429Mouse
4141302Ssrq5_mstress response QTL 5 (mouse)Not determined868324042683430Mouse
4141555Nbwa2_mNZB and NZW autoimmunity 2 (mouse)Not determined41789251551892635Mouse
10412178Habiir2_mhyperoxic acute lung injury imprinted region 2 (mouse)Not determined43945212663283678Mouse
1300574Im2_mimmunoregulatory 2 (mouse)Not determined42807768262077816Mouse
12880405Jcdq1_mjoint cartilage degeneration QTL 1 (mouse)41256237746562509Mouse
4142318Lyr2_mlymphoma resistance 2 (mouse)Not determined1401045763283678Mouse
1301697Sluc18_msusceptibility to lung cancer 18 (mouse)Not determined42237344856373612Mouse
1357453Kidq4_mkidney weight QTL 4 (mouse)Not determined41789261688982216Mouse
4142047Mvwf3_mmodifier of von Willebrand factor 3 (mouse)Not determined14010457117072206Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
1357877Synch1_msynechia 1 (mouse)Not determined42870992562710107Mouse
1300977Mopkd1_mmodifier of polycystic kidney disease progression 1 (mouse)Not determined43655083970550967Mouse
25440481Moaq1_mmodifier of alien QTL 1 (mouse)41950000046000000Mouse
1301237Alcp7_malcohol preference locus 7 (mouse)Not determined41739516051395290Mouse
4141911W6q15_mweight 6 weeks QTL 15 (mouse)Not determined1789261688982216Mouse
1302075Bdln6_mbody length 6 (mouse)Not determined42237344856373612Mouse
1302010Wta1_mweight adult 1 (mouse)Not determined4868324042683429Mouse
4142290Ssrq9_mstress response QTL 9 (mouse)Not determined3439516046332776Mouse
1301437Scon1_msucrose consumption 1 (mouse)Not determined42237344856373612Mouse
10401905Sicd3_mseizure-induced cell death 3 (mouse)Not determined4939552543760862Mouse
1301473Triglq1_mtriglyceride QTL 1 (mouse)Not determined4868324042683429Mouse
1300769Pcyts2_mplasmacytoma susceptibility 2 (mouse)Not determined42211194456112145Mouse
1301792Hdlq10_mHDL QTL 10 (mouse)Not determined43585970769859853Mouse
1301990Arvm1_mautoimmune renal vasculitis 1 (mouse)Not determined42933264663332776Mouse
1302116Bbaa1_mB.burgdorferi-associated arthritis 1 (mouse)Not determined43825093072251078Mouse
1302058Hrtfm3_mheart failure modifier 3 (mouse)Not determined42211194456112145Mouse
1302184Aaom1_mautoimmune aoritis in MRL mice 1 (mouse)Not determined42432229946332776Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000128993793Mouse
1302125Lxw1_mlupus BXSB x NZW 1 (mouse)Not determined4868324042683429Mouse

Markers in Region
AW743448  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38440,827,014 - 40,827,264UniSTSGRCm38
MGSCv37440,774,047 - 40,774,297UniSTSGRCm37
Celera440,487,801 - 40,488,051UniSTS
Cytogenetic Map4A5UniSTS
cM Map418.6UniSTS
Whitehead/MRC_RH4653.04UniSTS
D00314  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38440,805,766 - 40,805,894UniSTSGRCm38
MGSCv37440,752,799 - 40,752,927UniSTSGRCm37
Celera440,466,498 - 40,466,626UniSTS
Cytogenetic Map4A5UniSTS
cM Map418.6UniSTS
Whitehead/MRC_RH4651.02UniSTS
RH124579  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38440,804,660 - 40,804,821UniSTSGRCm38
MGSCv37440,751,693 - 40,751,854UniSTSGRCm37
Celera440,465,392 - 40,465,553UniSTS
Cytogenetic Map4A5UniSTS
cM Map418.6UniSTS
B4galt1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4A5UniSTS
cM Map420.46UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001378519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_022305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_165793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA217591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AEKQ02033059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH002834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK131721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL833775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC053006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D00314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D00315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  J03880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L16840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M36289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000030121   ⟹   ENSMUSP00000030121
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl440,804,602 - 40,854,005 (-)Ensembl
GRCm38.p6 Ensembl440,804,602 - 40,854,005 (-)Ensembl
Ensembl Acc Id: ENSMUST00000108096   ⟹   ENSMUSP00000103731
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl440,809,154 - 40,854,005 (-)Ensembl
GRCm38.p6 Ensembl440,809,154 - 40,854,005 (-)Ensembl
RefSeq Acc Id: NM_001378519   ⟹   NP_001365448
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39440,804,602 - 40,853,795 (-)NCBI
GRCm38440,804,602 - 40,853,795 (-)NCBI
Sequence:
RefSeq Acc Id: NM_022305   ⟹   NP_071641
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39440,804,602 - 40,853,984 (-)NCBI
GRCm38440,804,602 - 40,853,984 (-)NCBI
MGSCv37440,751,635 - 40,801,031 (-)RGD
Celera440,465,314 - 40,515,534 (-)NCBI
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_165793
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39440,804,602 - 40,853,984 (-)NCBI
GRCm38440,804,602 - 40,853,984 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004941814
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39440,807,764 - 40,855,711 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004941815
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39440,807,764 - 40,855,711 (-)NCBI
Sequence:
RefSeq Acc Id: NP_071641   ⟸   NM_022305
- Peptide Label: isoform 1
- UniProtKB: P15535 (UniProtKB/Swiss-Prot),   B1AXY5 (UniProtKB/TrEMBL),   Q3U478 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001365448   ⟸   NM_001378519
- Peptide Label: isoform 2
- UniProtKB: B1AXY5 (UniProtKB/TrEMBL),   Q3TJS1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000103731   ⟸   ENSMUST00000108096
Ensembl Acc Id: ENSMUSP00000030121   ⟸   ENSMUST00000030121
Protein Domains
Galactosyltransferase C-terminal   Galactosyltransferase N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P15535-F1-model_v2 AlphaFold P15535 1-399 view protein structure

Promoters
RGD ID:6834931
Promoter ID:MM_KWN:37121
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000015075,   OTTMUST00000015076
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36440,800,676 - 40,801,462 (-)MPROMDB
RGD ID:6883062
Promoter ID:EPDNEW_M4982
Type:initiation region
Name:B4galt1_1
Description:Mus musculus UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase,polypeptide 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4983  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38440,853,972 - 40,854,032EPDNEW
RGD ID:6883064
Promoter ID:EPDNEW_M4983
Type:initiation region
Name:B4galt1_2
Description:Mus musculus UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase,polypeptide 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4982  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38440,854,537 - 40,854,597EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:95705 AgrOrtholog
Ensembl Genes ENSMUSG00000028413 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000030121 ENTREZGENE
  ENSMUST00000030121.13 UniProtKB/Swiss-Prot
Gene3D-CATH Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A UniProtKB/Swiss-Prot
InterPro Galactosyl_T UniProtKB/Swiss-Prot
  Galactosyl_T_C UniProtKB/Swiss-Prot
  Galactosyl_T_N UniProtKB/Swiss-Prot
  Nucleotide-diphossugar_trans UniProtKB/Swiss-Prot
KEGG Report mmu:14595 UniProtKB/Swiss-Prot
MGD MGI:95705 ENTREZGENE
NCBI Gene B4galt1 ENTREZGENE
PANTHER BETA-1,4-GALACTOSYLTRANSFERASE 1 UniProtKB/Swiss-Prot
  PTHR19300 UniProtKB/Swiss-Prot
Pfam Glyco_transf_7C UniProtKB/Swiss-Prot
  Glyco_transf_7N UniProtKB/Swiss-Prot
PhenoGen B4galt1 PhenoGen
PRINTS B14GALTRFASE UniProtKB/Swiss-Prot
Superfamily-SCOP SSF53448 UniProtKB/Swiss-Prot
UniProt B1AXY5 ENTREZGENE, UniProtKB/TrEMBL
  B4GT1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q05CE5_MOUSE UniProtKB/TrEMBL
  Q3TJS1 ENTREZGENE, UniProtKB/TrEMBL
  Q3U478 ENTREZGENE, UniProtKB/TrEMBL
  Q61331_MOUSE UniProtKB/TrEMBL
  Q6LDL0_MOUSE UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2025-07-28 B4galt1  UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1  Ggtb2  galactosyltransferase 2 beta 1, 4  Symbol and/or name updated 27372883 PROVISIONAL
2025-07-22 Ggtb2  galactosyltransferase 2 beta 1, 4  B4galt1  UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1  Symbol and/or name change 5135510 APPROVED
2024-08-21 B4galt1  UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1  Ggtb2  galactosyltransferase 2 beta 1, 4  Symbol and/or name change 5135510 APPROVED
2024-08-21 Ggtb2  galactosyltransferase 2 beta 1, 4  B4galt1  UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1  Symbol and/or name change 5135510 APPROVED