Myf5 (myogenic factor 5) - Rat Genome Database

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Gene: Myf5 (myogenic factor 5) Mus musculus
Analyze
Symbol: Myf5
Name: myogenic factor 5
RGD ID: 1318026
MGI Page MGI
Description: Enables DNA-binding transcription activator activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Acts upstream of or within several processes, including positive regulation of transcription by RNA polymerase II; skeletal muscle cell differentiation; and skeletal system morphogenesis. Predicted to be located in nucleoplasm. Is expressed in several structures, including alimentary system; brain; embryo mesenchyme; genitourinary system; and musculature. Orthologous to human MYF5 (myogenic factor 5).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: B130010J22Rik; bHLHc; bHLHc2; Myf-5; myogenic regulatory factor MYF-5
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910107,318,769 - 107,322,787 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10107,318,769 - 107,321,995 (-)EnsemblGRCm39 Ensembl
GRCm3810107,482,908 - 107,486,927 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10107,482,908 - 107,486,134 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710106,919,964 - 106,923,190 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610106,887,018 - 106,890,244 (-)NCBIMGSCv36mm8
Celera10109,425,392 - 109,428,623 (-)NCBICelera
Cytogenetic Map10D1NCBI
cM Map1055.95NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (IEA,ISO)
nucleus  (TAS)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal brown adipose tissue morphology  (IAGP)
abnormal brown adipose tissue thermogenesis  (IAGP)
abnormal brown fat cell differentiation  (IAGP)
abnormal cell differentiation  (IAGP)
abnormal cellular respiration  (IAGP)
abnormal cervical vertebrae morphology  (IAGP)
abnormal cholinergic neuron morphology  (IAGP)
abnormal costal cartilage morphology  (IAGP)
abnormal diaphragm morphology  (IAGP)
abnormal excitatory postsynaptic potential  (IAGP)
abnormal extraocular muscle morphology  (IAGP)
abnormal eye muscle development  (IAGP)
abnormal forelimb morphology  (IAGP)
abnormal gait  (IAGP)
abnormal gluconeogenesis  (IAGP)
abnormal glucose homeostasis  (IAGP)
abnormal interscapular fat pad morphology  (IAGP)
abnormal levator veli palatini muscle morphology  (IAGP)
abnormal M line morphology  (IAGP)
abnormal muscle development  (IAGP)
abnormal muscle morphology  (IAGP)
abnormal muscle precursor cell migration  (IAGP)
abnormal muscle precursor cell morphology  (IAGP)
abnormal muscle precursor cell physiology  (IAGP)
abnormal muscle regeneration  (IAGP)
abnormal muscle spindle morphology  (IAGP)
abnormal myoblast differentiation  (IAGP)
abnormal myogenesis  (IAGP)
abnormal myotome development  (IAGP)
abnormal myotube morphology  (IAGP)
abnormal nervous system electrophysiology  (IAGP)
abnormal neuromuscular synapse morphology  (IAGP)
abnormal oxygen consumption  (IAGP)
abnormal palatopharyngeus muscle morphology  (IAGP)
abnormal pharyngeal muscle morphology  (IAGP)
abnormal posture  (IAGP)
abnormal respiration  (IAGP)
abnormal rib development  (IAGP)
abnormal rib morphology  (IAGP)
abnormal sarcomere morphology  (IAGP)
abnormal sensory neuron innervation pattern  (IAGP)
abnormal skeletal muscle fiber morphology  (IAGP)
abnormal skeletal muscle fiber type ratio  (IAGP)
abnormal skeletal muscle morphology  (IAGP)
abnormal skeletal muscle regeneration  (IAGP)
abnormal skeletal muscle satellite cell proliferation  (IAGP)
abnormal soft palate morphology  (IAGP)
abnormal soft palate muscle morphology  (IAGP)
abnormal soleus morphology  (IAGP)
abnormal somite development  (IAGP)
abnormal sternebra morphology  (IAGP)
abnormal sternocostal joint morphology  (IAGP)
abnormal sternum ossification  (IAGP)
abnormal superior pharyngeal constrictor muscle morphology  (IAGP)
abnormal tensor veli palatini muscle morphology  (IAGP)
abnormal thoracic cage morphology  (IAGP)
abnormal tibialis anterior morphology  (IAGP)
absent extraocular muscles  (IAGP)
absent gastric milk in neonates  (IAGP)
absent myotome  (IAGP)
absent skeletal muscle  (IAGP)
asymmetric sternocostal joints  (IAGP)
ataxia  (IAGP)
cachexia  (IAGP)
centrally nucleated skeletal muscle fibers  (IAGP)
cervical vertebral fusion  (IAGP)
cleft soft palate  (IAGP)
decreased body fat mass  (IAGP)
decreased body length  (IAGP)
decreased body size  (IAGP)
decreased body weight  (IAGP)
decreased brown adipose tissue amount  (IAGP)
decreased brown adipose tissue mass  (IAGP)
decreased brown fat cell size  (IAGP)
decreased brown fat lipid droplet number  (IAGP)
decreased cell proliferation  (IAGP)
decreased circulating insulin level  (IAGP)
decreased circulating insulin-like growth factor I level  (IAGP)
decreased fat cell mitochondrial DNA content  (IAGP)
decreased fetal weight  (IAGP)
decreased grip strength  (IAGP)
decreased interscapular fat pad weight  (IAGP)
decreased lean body mass  (IAGP)
decreased mitochondrial number  (IAGP)
decreased motor neuron number  (IAGP)
decreased muscle spindle number  (IAGP)
decreased muscle weight  (IAGP)
decreased palatal shelf size  (IAGP)
decreased physiological sensitivity to xenobiotic  (IAGP)
decreased satellite cell number  (IAGP)
decreased skeletal muscle fiber diameter  (IAGP)
decreased skeletal muscle fiber number  (IAGP)
decreased skeletal muscle fiber size  (IAGP)
decreased skeletal muscle mass  (IAGP)
decreased skeletal muscle weight  (IAGP)
delayed muscle development  (IAGP)
delayed skeletal muscle regeneration  (IAGP)
delayed somite formation  (IAGP)
dystrophic muscle  (IAGP)
fusion of vertebral arches  (IAGP)
impaired adaptive thermogenesis  (IAGP)
impaired glucose tolerance  (IAGP)
impaired skeletal muscle regeneration  (IAGP)
improved glucose tolerance  (IAGP)
increased bone ossification  (IAGP)
increased brown fat cell lipid droplet size  (IAGP)
increased circulating creatine kinase level  (IAGP)
increased circulating triglyceride level  (IAGP)
increased collagen deposition in the muscles  (IAGP)
increased inflammatory response  (IAGP)
increased insulin sensitivity  (IAGP)
increased interscapular fat pad weight  (IAGP)
increased rib number  (IAGP)
increased sarcoma incidence  (IAGP)
increased skeletal muscle cell glucose uptake  (IAGP)
increased skeletal muscle fiber diameter  (IAGP)
increased skeletal muscle fiber size  (IAGP)
increased total body fat amount  (IAGP)
increased tumor incidence  (IAGP)
increased variability of skeletal muscle fiber size  (IAGP)
insulin resistance  (IAGP)
lethality during fetal growth through weaning, complete penetrance  (IAGP)
lethality throughout fetal growth and development, complete penetrance  (IAGP)
maternal imprinting  (IAGP)
myopathy  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
neonatal lethality, incomplete penetrance  (IAGP)
no abnormal phenotype detected  (IAGP)
perinatal lethality, complete penetrance  (IAGP)
perinatal lethality, incomplete penetrance  (IAGP)
postnatal growth retardation  (IAGP)
postnatal lethality  (IAGP)
postnatal lethality, complete penetrance  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
premature death  (IAGP)
preweaning lethality, incomplete penetrance  (IAGP)
respiratory distress  (IAGP)
respiratory failure  (IAGP)
rib bifurcation  (IAGP)
rib fusion  (IAGP)
scoliosis  (IAGP)
short ribs  (IAGP)
short sternum  (IAGP)
skeletal muscle atrophy  (IAGP)
skeletal muscle degeneration  (IAGP)
skeletal muscle fiber degeneration  (IAGP)
skeletal muscle fiber necrosis  (IAGP)
skeletal muscle fibrosis  (IAGP)
skeletal muscle necrosis  (IAGP)
slow postnatal weight gain  (IAGP)
thoracic vertebral fusion  (IAGP)
upper jaw to lower jaw transformation  (IAGP)
weakness  (IAGP)
whitened brown adipose tissue morphology  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. MGD IEA MGD IEA
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1330322   PMID:1351769   PMID:1361374   PMID:1374351   PMID:1423602   PMID:1525038   PMID:1652425   PMID:1668275   PMID:1741288   PMID:1846704   PMID:1911647   PMID:2045411  
PMID:2300571   PMID:2721498   PMID:7588068   PMID:7588258   PMID:7589813   PMID:7597044   PMID:7720554   PMID:7720708   PMID:7750649   PMID:7797078   PMID:7851652   PMID:7901737  
PMID:7922315   PMID:7929574   PMID:7956819   PMID:7958419   PMID:8026334   PMID:8026626   PMID:8076204   PMID:8162858   PMID:8187825   PMID:8187980   PMID:8196663   PMID:8269513  
PMID:8290594   PMID:8293880   PMID:8375340   PMID:8391976   PMID:8565825   PMID:8565855   PMID:8573720   PMID:8573722   PMID:8575308   PMID:8587605   PMID:8593696   PMID:8617206  
PMID:8620528   PMID:8625794   PMID:8626014   PMID:8627340   PMID:8631261   PMID:8797820   PMID:8837770   PMID:8896984   PMID:8918877   PMID:8950513   PMID:8955271   PMID:9094721  
PMID:9094722   PMID:9109488   PMID:9216993   PMID:9268575   PMID:9268580   PMID:9284043   PMID:9343420   PMID:9359635   PMID:9368741   PMID:9389448   PMID:9405106   PMID:9428409  
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PMID:10037786   PMID:10075844   PMID:10191046   PMID:10199981   PMID:10208749   PMID:10349636   PMID:10392718   PMID:10403250   PMID:10415359   PMID:10457014   PMID:10477293   PMID:10508520  
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PMID:16275751   PMID:16301527   PMID:16387292   PMID:16424906   PMID:16554364   PMID:16584724   PMID:16638982   PMID:16824806   PMID:16936075   PMID:16951257   PMID:17039375   PMID:17098221  
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PMID:19521566   PMID:19531352   PMID:19531353   PMID:19590010   PMID:19641492   PMID:19698141   PMID:19699733   PMID:19712265   PMID:19733541   PMID:19783738   PMID:19829708   PMID:19954518  
PMID:20013826   PMID:20027616   PMID:20059953   PMID:20079729   PMID:20178747   PMID:20193675   PMID:20230754   PMID:20307260   PMID:20368965   PMID:20412779   PMID:20412781   PMID:20427568  
PMID:20534536   PMID:20596238   PMID:20628604   PMID:20699298   PMID:20705734   PMID:20876523   PMID:20978076   PMID:21035439   PMID:21041412   PMID:21124733   PMID:21143873   PMID:21145483  
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PMID:21602886   PMID:21683695   PMID:21689628   PMID:21708977   PMID:21731673   PMID:21782525   PMID:21852201   PMID:21873635   PMID:21956886   PMID:21962509   PMID:21985497   PMID:21988915  
PMID:22040534   PMID:22079119   PMID:22147266   PMID:22174917   PMID:22228095   PMID:22253858   PMID:22318627   PMID:22366456   PMID:22370001   PMID:22377357   PMID:22438570   PMID:22460713  
PMID:22513369   PMID:22522309   PMID:22638570   PMID:22723526   PMID:22723710   PMID:22736793   PMID:22770245   PMID:22797074   PMID:22859371   PMID:22863532   PMID:22865881   PMID:22902530  
PMID:22922256   PMID:22940113   PMID:22940198   PMID:22945933   PMID:22987639   PMID:22987640   PMID:23079662   PMID:23085413   PMID:23112163   PMID:23114596   PMID:23129614   PMID:23136394  
PMID:23169059   PMID:23261931   PMID:23384562   PMID:23395168   PMID:23410975   PMID:23451037   PMID:23477786   PMID:23485971   PMID:23562821   PMID:23623977   PMID:23639729   PMID:23650549  
PMID:23666760   PMID:23674686   PMID:23740968   PMID:23765941   PMID:23831688   PMID:23907538   PMID:23921231   PMID:23933088   PMID:23946446   PMID:23968884   PMID:23969310   PMID:23987512  
PMID:24019467   PMID:24055173   PMID:24146773   PMID:24196706   PMID:24301466   PMID:24344199   PMID:24361185   PMID:24368734   PMID:24514266   PMID:24703692   PMID:24705356   PMID:24875805  
PMID:24906372   PMID:24927569   PMID:24938781   PMID:24942009   PMID:24952961   PMID:25001283   PMID:25005473   PMID:25030697   PMID:25071153   PMID:25087979   PMID:25197048   PMID:25220152  
PMID:25236433   PMID:25392270   PMID:25480916   PMID:25490265   PMID:25490270   PMID:25605332   PMID:25625589   PMID:25661440   PMID:25725491   PMID:25848030   PMID:25918248   PMID:26042028  
PMID:26178867   PMID:26214036   PMID:26275053   PMID:26276812   PMID:26372956   PMID:26387456   PMID:26459221   PMID:26468276   PMID:26538636   PMID:26586428   PMID:26688546   PMID:26708556  
PMID:26729601   PMID:26751696   PMID:26819411   PMID:26831464   PMID:26844205   PMID:26906734   PMID:26947017   PMID:26963625   PMID:27159388   PMID:27166947   PMID:27183316   PMID:27185876  
PMID:27257474   PMID:27302464   PMID:27554475   PMID:27569721   PMID:27594590   PMID:27777310   PMID:27777311   PMID:27798115   PMID:27826658   PMID:27833743   PMID:27880909   PMID:27906130  
PMID:27967605   PMID:28049691   PMID:28121289   PMID:28153048   PMID:28228264   PMID:28324027   PMID:28346411   PMID:28408438   PMID:28428261   PMID:28437527   PMID:28600496   PMID:28696211  
PMID:28807781   PMID:28821740   PMID:28827394   PMID:28844842   PMID:28893950   PMID:29095838   PMID:29107505   PMID:29168801   PMID:29202462   PMID:29263365   PMID:29281018   PMID:29323161  
PMID:29384476   PMID:29478898   PMID:29543863   PMID:29674978   PMID:29681515   PMID:29728617   PMID:29757434   PMID:29768404   PMID:29784793   PMID:29795344   PMID:29799007   PMID:29934048  
PMID:30021173   PMID:30335158   PMID:30416072   PMID:30510196   PMID:30511745   PMID:30638444   PMID:30683671   PMID:30686765   PMID:30713094   PMID:30770808   PMID:30772257   PMID:30833219  
PMID:30870413   PMID:30872276   PMID:31001581   PMID:31127120   PMID:31130354   PMID:31189430   PMID:31353262   PMID:31375635   PMID:31433978   PMID:31451430   PMID:31535973   PMID:31685980  
PMID:31719045   PMID:31840352   PMID:31965111   PMID:32039917   PMID:32327658   PMID:32520726   PMID:32601106   PMID:32768399   PMID:32930093   PMID:33201874   PMID:33259860   PMID:33298461  
PMID:33525599   PMID:33527775   PMID:33527978   PMID:33712604   PMID:33732701   PMID:33888555   PMID:33905720   PMID:34011940   PMID:34059674   PMID:34078620   PMID:34078750   PMID:34439754  
PMID:34544261   PMID:34557486   PMID:34824202   PMID:34948179   PMID:35045287   PMID:35099008   PMID:35225230   PMID:35417710   PMID:35422047   PMID:35618666   PMID:35648809   PMID:35671424  
PMID:35697700   PMID:35733999   PMID:35863637   PMID:35874842   PMID:36077405   PMID:36196867   PMID:36227576   PMID:36257937   PMID:36400788   PMID:36535626   PMID:36542062   PMID:36715084  
PMID:36894534   PMID:37154692   PMID:37246520   PMID:37267426   PMID:37647897   PMID:37723138   PMID:38048357   PMID:38829202   PMID:38875306   PMID:38876109   PMID:38972757   PMID:39051762  
PMID:39082789   PMID:39358382   PMID:39378988   PMID:39580459  


Genomics

Comparative Map Data
Myf5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910107,318,769 - 107,322,787 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10107,318,769 - 107,321,995 (-)EnsemblGRCm39 Ensembl
GRCm3810107,482,908 - 107,486,927 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10107,482,908 - 107,486,134 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710106,919,964 - 106,923,190 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610106,887,018 - 106,890,244 (-)NCBIMGSCv36mm8
Celera10109,425,392 - 109,428,623 (-)NCBICelera
Cytogenetic Map10D1NCBI
cM Map1055.95NCBI
MYF5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381280,716,912 - 80,719,671 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1280,716,912 - 80,719,671 (+)EnsemblGRCh38hg38GRCh38
GRCh371281,110,691 - 81,113,450 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361279,634,839 - 79,637,578 (+)NCBINCBI36Build 36hg18NCBI36
Build 341279,613,268 - 79,615,915NCBI
Celera1280,776,922 - 80,779,661 (+)NCBICelera
Cytogenetic Map12q21.31NCBI
HuRef1278,167,593 - 78,170,332 (+)NCBIHuRef
CHM1_11281,077,115 - 81,079,854 (+)NCBICHM1_1
T2T-CHM13v2.01280,695,622 - 80,698,381 (+)NCBIT2T-CHM13v2.0
Myf5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8744,689,407 - 44,692,638 (-)NCBIGRCr8
mRatBN7.2742,802,946 - 42,806,177 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl742,802,946 - 42,806,177 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx744,715,406 - 44,718,610 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0746,918,487 - 46,921,691 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0746,696,321 - 46,699,525 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0749,729,533 - 49,732,974 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl749,729,533 - 49,732,764 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0749,739,441 - 49,742,672 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4746,189,256 - 46,192,487 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1746,210,584 - 46,212,529 (-)NCBI
Celera739,675,643 - 39,678,874 (-)NCBICelera
Cytogenetic Map7q21NCBI
Myf5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540519,345,943 - 19,348,453 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540519,345,943 - 19,348,453 (+)NCBIChiLan1.0ChiLan1.0
MYF5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21088,764,988 - 88,767,747 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11288,761,383 - 88,764,142 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01278,236,945 - 78,239,701 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11281,347,640 - 81,350,389 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1281,347,324 - 81,350,389 (+)Ensemblpanpan1.1panPan2
MYF5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11523,049,235 - 23,051,604 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1523,048,585 - 23,051,970 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1523,473,030 - 23,475,426 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01523,410,137 - 23,412,529 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11522,987,463 - 22,989,855 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01523,046,938 - 23,049,333 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01523,287,307 - 23,290,205 (+)NCBIUU_Cfam_GSD_1.0
Myf5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494537,300,158 - 37,303,273 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366981,609,227 - 1,611,283 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366981,609,227 - 1,611,283 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MYF5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl5100,752,890 - 100,755,494 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.15100,753,440 - 100,755,558 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.25105,701,164 - 105,703,283 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MYF5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11176,189,122 - 76,193,830 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1176,191,579 - 76,193,549 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037169,243,360 - 169,246,115 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Myf5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462483733,864 - 35,837 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462483733,735 - 36,052 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Myf5
154 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:285
Count of miRNA genes:198
Interacting mature miRNAs:237
Transcripts:ENSMUST00000000445
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301520Uvbi1_mUVB induced immunosuppression 1 (mouse)Not determined1086909085120909229Mouse
4142137Femwf3_mfemur work to failure 3 (mouse)Not determined75338568109338767Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
4142386Tgq20_mtriglyceride QTL 20 (mouse)Not determined88836456122836456Mouse
1357594Estoq3_membryo survival total QTL 3 (mouse)Not determined1084079650122041528Mouse
4141361Cfmq3_mcystic fibrosis modifier QTL 3 (mouse)Not determined10101497164130530862Mouse
4141487Tgq21_mtriglyceride QTL 21 (mouse)Not determined104110021130530862Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
1301895Exq1_mexploratory and excitability QTL 1 (mouse)Not determined10102847852130530862Mouse
14746996Manh69_mmandible shape 69 (mouse)10104763638130530862Mouse
4141479W10q8_mweight 10 weeks QTL 8 (mouse)Not determined84079650122041528Mouse
14747004Mancz8_mmandible centroid size 8 (mouse)1082078412116078412Mouse
1301901Im5_mimmunoregulatory 5 (mouse)Not determined10101497164130530862Mouse
4142496W6q8_mweight 6 weeks QTL 8 (mouse)Not determined84079650122041528Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018259333125575232Mouse
12910821Ogrq4_moverall growth rate QTL 4 (mouse)1092169056107319989Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1044876096115935905Mouse
11039497Ltpr5a_mLeishmania tropica response 5a (mouse)1073506901107507047Mouse
1357622Espq3_membryo survival preimplantation QTL 3 (mouse)Not determined1084079650122041528Mouse
4142365Egq9_mearly growth QTL 9 (mouse)Not determined84079650122041528Mouse
13208554Lgth11_mbody length 11 (mouse)1090835862120835905Mouse
1357744Cfbw4_mcystic fibrosis body weight 4 (mouse)Not determined10100986516130530862Mouse
1300921Skl4_mskeletal size (tail length) 4 (mouse)Not determined1088088254122088391Mouse
1302200Sle12_msystematic lupus erythematosus susceptibility 12 (mouse)Not determined10105041304130530862Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045476096120635905Mouse
11251717Siim1_mstress induced immobility 1 (mouse)1078381268112381268Mouse
1300797Sluc22_msusceptibility to lung cancer 22 (mouse)Not determined1086713608120713756Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069735830130430862Mouse
11039516Ltpr5_mLeishmania tropica response 5 (mouse)1090506901125575232Mouse
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
13208560Wght9_mweight 9 (mouse)1059835822120835905Mouse
1301165Lith7_mlithogenic gene 7 (mouse)Not determined1082309418116309657Mouse
26884388Skwq7_mskull length QTL 7, 10 week (mouse)10101735861113735905Mouse
1357482Nhdlq4_mnon-HDL QTL 4 (mouse)Not determined10105041304130530862Mouse
1300908Insq4_minsulin QTL 4 (mouse)Not determined1086909085120909229Mouse
4141054mwfh_mmodifier of white forlock hypopigmentation (mouse)Not determined83017003117017136Mouse
4142461Bmd25_mbone mineral density 25 (mouse)Not determined1097217101130530862Mouse
1301968Estq4_mestradiol regulated response QTL 4 (mouse)Not determined10100986516130530862Mouse
26884447Sklq9_mskull length QTL 9, 10 week (mouse)1067335830111735905Mouse
11353832Pcholq4_mplasma cholesterol QTL 4 (mouse)1073987216125515907Mouse
4142074Tmevp2_mTheiler's murine encephalomyelitis virus persistence 2 (mouse)Not determined92729941111568319Mouse
1357779Tesq3_mtestis weight QTL 3 (mouse)Not determined1084079650122041528Mouse
11059552Lmr32c_mleishmaniasis resistance 32c (mouse)1099309418116220862Mouse
11059553Lmr32d_mleishmaniasis resistance 32d (mouse)1082309418116309657Mouse
11059554Lmr32e_mleishmaniasis resistance 32e (mouse)1082309418116309657Mouse
11059555Lmr32f_mleishmaniasis resistance 32f (mouse)1082309418116309657Mouse
11533921Mvb2_mmodifier of vibrator 2 (mouse)1097217101130530862Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024675898121035905Mouse
26884424Zlq9_mzygomatic length QTL 9, 16 week (mouse)1063935779115935905Mouse
1357638Cia29_mcollagen induced arthritis 29 (mouse)Not determined1085454982118497353Mouse
26884430Zlq5_mzygomatic length QTL 5, 10 week (mouse)1067835830124835905Mouse
1357632Vtbt9_mvertebral trabecular bone trait 9 (mouse)Not determined1075338568109338767Mouse
1300679Nociq2_mnociceptive sensitivity inflammatory QTL 2 (mouse)Not determined10105041304130530862Mouse
1300678Leg2_mlongevity extending gene 2 (mouse)Not determined10102506908130530862Mouse
12880413V125Dq9_mvitamin D active form serum level QTL 9 (mouse)1097535905130530862Mouse
11353843Gluq1_mblood glucose QTL 1 (mouse)1073987216125515907Mouse
4141402T2dm1sa_mtype 2 diabetes mellitus 1 in SMXA RI mice (mouse)Not determined97758644130530862Mouse
4141269Ipng2_mimprinted postnatal growth 2 (mouse)Not determined105088254118497353Mouse
1301758Fcsa3_mfemoral cross-sectional area 3 (mouse)Not determined1089927651123927754Mouse
10043881Adip24_madiposity 24 (mouse)Not determined1082392803116392952Mouse
11533919Mvb4_mmodifier of vibrator 4 (mouse)397217101130530862Mouse
11059544Lmr32_mleishmaniasis resistance 32 (mouse)1099309418116220862Mouse
4141007Obrq10_mobesity resistance QTL 10 (mouse)Not determined103243727130530862Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021408154114217230Mouse
4141387Lgaq5_mlate growth adjusted QTL 5 (mouse)Not determined84079650122041528Mouse
11059550Lmr32a_mleishmaniasis resistance 32a (mouse)1082309418116309657Mouse
11059551Lmr32b_mleishmaniasis resistance 32b (mouse)1082309418116309657Mouse
14696727Kidrq2_mkidney weight, right QTL 2 (mouse)10102902508130530862Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059335822122335905Mouse
11040593Lmr5e_mleishmaniasis resistance 5e (mouse)1099220635130530862Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
27226725Tibw1_mtibia width 1, proximal, 5 week (mouse)10102735861123235905Mouse
11040594Lmr5f_mleishmaniasis resistance 5f (mouse)10105179713130530862Mouse
11040595Lmr5c_mleishmaniasis resistance 5c (mouse)1099220635130530862Mouse
1300975Fembrs3_mfemur breaking strength 3 (mouse)Not determined1075338568109338767Mouse
1357544Vtbt10_mvertebral trabecular bone trait 10 (mouse)Not determined1097217101130530862Mouse
11040596Lmr5d_mleishmaniasis resistance 5d (mouse)10105179713130530862Mouse
11040597Lmr5a_mleishmaniasis resistance 5a (mouse)1099220635130530862Mouse
11040598Lmr5b_mleishmaniasis resistance 5b (mouse)10105179713130530862Mouse

Markers in Region
PMC15073P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810107,484,686 - 107,485,526UniSTSGRCm38
MGSCv3710106,921,742 - 106,922,582UniSTSGRCm37
Celera10109,427,179 - 109,428,015UniSTS
Cytogenetic Map10D1UniSTS
cM Map1059.0UniSTS
Myf5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810107,484,028 - 107,484,719UniSTSGRCm38
MGSCv3710106,921,084 - 106,921,775UniSTSGRCm37
Celera10109,426,512 - 109,427,212UniSTS
Cytogenetic Map10D1UniSTS
cM Map1059.0UniSTS
Myf5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810107,484,686 - 107,485,526UniSTSGRCm38
MGSCv3710106,921,742 - 106,922,582UniSTSGRCm37
Celera10109,427,179 - 109,428,015UniSTS
Cytogenetic Map10D1UniSTS
cM Map1059.0UniSTS
Myf5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4C3UniSTS
Cytogenetic Map10D1UniSTS
Cytogenetic Map15F2UniSTS
Myf5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810107,484,661 - 107,485,564UniSTSGRCm38
MGSCv3710106,921,717 - 106,922,620UniSTSGRCm37
Celera10109,427,154 - 109,428,053UniSTS
Cytogenetic Map10D1UniSTS
cM Map1059.0UniSTS
Myf5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810107,483,915 - 107,484,352UniSTSGRCm38
MGSCv3710106,920,971 - 106,921,408UniSTSGRCm37
Celera10109,426,399 - 109,426,836UniSTS
Cytogenetic Map10D1UniSTS
cM Map1059.0UniSTS
Myf5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810107,482,986 - 107,483,150UniSTSGRCm38
MGSCv3710106,920,042 - 106,920,206UniSTSGRCm37
Celera10109,425,470 - 109,425,634UniSTS
Cytogenetic Map10D1UniSTS
cM Map1059.0UniSTS
Myf5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810107,485,497 - 107,485,884UniSTSGRCm38
MGSCv3710106,922,553 - 106,922,940UniSTSGRCm37
Celera10109,427,986 - 109,428,373UniSTS
Cytogenetic Map10D1UniSTS
cM Map1059.0UniSTS
Myf5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810107,485,490 - 107,485,874UniSTSGRCm38
MGSCv3710106,922,546 - 106,922,930UniSTSGRCm37
Celera10109,427,979 - 109,428,363UniSTS
Cytogenetic Map10D1UniSTS
cM Map1059.0UniSTS
Myf5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810107,484,161 - 107,485,520UniSTSGRCm38
MGSCv3710106,921,217 - 106,922,576UniSTSGRCm37
Celera10109,426,645 - 109,428,009UniSTS
Cytogenetic Map10D1UniSTS
Myf5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10D1UniSTS
Myf5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810107,483,991 - 107,485,526UniSTSGRCm38
MGSCv3710106,921,047 - 106,922,582UniSTSGRCm37
Celera10109,426,475 - 109,428,015UniSTS
Cytogenetic Map10D1UniSTS
cM Map1059.0UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000000445   ⟹   ENSMUSP00000000445
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10107,318,769 - 107,321,995 (-)Ensembl
GRCm38.p6 Ensembl10107,482,908 - 107,486,134 (-)Ensembl
RefSeq Acc Id: NM_008656   ⟹   NP_032682
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910107,318,769 - 107,321,995 (-)NCBI
GRCm3810107,482,908 - 107,486,134 (-)NCBI
MGSCv3710106,919,964 - 106,923,190 (-)RGD
Celera10109,425,392 - 109,428,623 (-)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006513319   ⟹   XP_006513382
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910107,318,772 - 107,322,787 (-)NCBI
GRCm3810107,482,911 - 107,486,927 (-)NCBI
Sequence:
RefSeq Acc Id: NP_032682   ⟸   NM_008656
- UniProtKB: Q543W7 (UniProtKB/Swiss-Prot),   P24699 (UniProtKB/Swiss-Prot),   A2RSK4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006513382   ⟸   XM_006513319
- Peptide Label: isoform X1
- UniProtKB: Q543W7 (UniProtKB/Swiss-Prot),   P24699 (UniProtKB/Swiss-Prot),   A2RSK4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000000445   ⟸   ENSMUST00000000445
Protein Domains
bHLH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P24699-F1-model_v2 AlphaFold P24699 1-255 view protein structure

Promoters
RGD ID:8673216
Promoter ID:EPDNEW_M14638
Type:single initiation site
Name:Myf5_1
Description:Mus musculus myogenic factor 5 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3810107,486,084 - 107,486,144EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:97252 AgrOrtholog
Ensembl Genes ENSMUSG00000000435 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000000445 ENTREZGENE
  ENSMUST00000000445.2 UniProtKB/Swiss-Prot
Gene3D-CATH 4.10.280.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Basic UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  bHLH_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HLH_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Myf5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Myogenic_factor UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:17877 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:97252 ENTREZGENE
NCBI Gene 17877 ENTREZGENE
PANTHER MYOGENIC FACTOR 5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11534 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Basic UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HLH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Myf5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Myf5 PhenoGen
PROSITE BHLH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART BASIC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HLH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47459 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2RSK4 ENTREZGENE, UniProtKB/TrEMBL
  MYF5_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q543W7 ENTREZGENE
  Q8VHZ2_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q543W7 UniProtKB/Swiss-Prot