Foco27 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Foco27 (Food consumption QTL 27) Rattus norvegicus

Symbol: Foco27
Name: Food consumption QTL 27
RGD ID: 7411658
Trait: eating behavior trait   (VT:0001431)    
Measurement Type: feed conversion ratio   (CMO:0001312)    
LOD Score: 16.2
P Value: 0.001
Variance: 15.1
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81169,855,943 - 99,753,367RGD_MAPPER_PIPELINE
mRatBN7.21156,351,424 - 86,241,447RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01159,943,023 - 90,463,843RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01163,034,217 - 93,518,069RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41158,591,436 - 87,759,784RGD_MAPPER_PIPELINERGSC3.4
Cross Type: intercross
Strains Crossed: F344/IcoCrlf LOU/NimrOlaHsd 
JBrowse: View Region in Genome Browser (JBrowse)
Model




  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Foco27RatBody Weight  IAGP 7401255 RGD 

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Foco27Ratincreased body weight  IDA 7401255 RGD 
Foco27Ratincreased food intake  IDA 7401255 RGD 

Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Foco27Ratfeed conversion ratio  IDA 7401255 RGD 

Experimental Condition
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Foco27Ratcontrol condition  IDA 7401255 RGD 

Measurement Method
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Foco27Ratbody weighing method  IDA 7401255 RGD 

Rat Strain
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Foco27RatF344/IcoCrlf  IEA 7401255 RGD 
Foco27RatLOU/NimrOlaHsd  IEA 7401255 RGD 

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Foco27Rateating behavior trait  IDA 7401255 RGD 


#
Reference Title
Reference Citation
1. QTLs influencing carbohydrate and fat choice in a LOU/CxFischer 344 F2 rat population. Marissal-Arvy N, etal., Obesity (Silver Spring). 2013 Apr 17. doi: 10.1002/oby.20485.


1 to 20 of 497 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1559616Sidt1SID1 transmembrane family, member 1115636278856459939Rat
1560175Usf3upstream transcription factor family member 3115647073856529736Rat
41393344LOC120095793U2 spliceosomal RNA115648531256485489Rat
1310944Naa50N(alpha)-acetyltransferase 50, NatE catalytic subunit115653836656560842Rat
1596464Atp6v1aATPase H+ transporting V1 subunit A115656144456614694Rat
41343076LOC120095658uncharacterized LOC120095658115656294256573857Rat
1305433Gramd1cGRAM domain containing 1C115663322956718570Rat
1303254Zdhhc23zinc finger DHHC-type palmitoyltransferase 23115671870256735063Rat
1566314Ccdc191coiled-coil domain containing 191115673565556806372Rat
1310054Qtrt2queuine tRNA-ribosyltransferase accessory subunit 2115680641756837239Rat
41170694LOC120095768small nucleolar RNA SNORA17115686809356868177Rat
2521Drd3dopamine receptor D3115687968956931901Rat
1563191TigitT cell immunoreceptor with Ig and ITIM domains115702902457046627Rat
1560387Zbtb20zinc finger and BTB domain containing 20115705212957791214Rat
2325438Mir568microRNA 568115705397857054073Rat
40973116LOC120095548uncharacterized LOC120095548115723499457248198Rat
41164990LOC120095546uncharacterized LOC120095546115746866457489060Rat
41133424LOC120095547uncharacterized LOC120095547115758193857588372Rat
1583712Tnk1-ps1tyrosine kinase, non-receptor, 1, pseudogene 1115789125957893134Rat
40944194LOC120095788U2 spliceosomal RNA115792982857929976Rat

1 to 20 of 497 rows
1 to 20 of 661 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
10375D11Mgh1149118256655382566702Ratregion
10376D11Wox6173118256654582566718Ratregion
11044D11Wox5246118344055583440803Ratregion
34112D11Mgh4172115980262259802794Ratregion
34725D11Mgh3168116642214866422316Ratregion
34727D11Mgh9147116297952662979675Ratregion
11291D11Mgh7162117757016877570330Ratregion
11292D11Got72144117757022577570369Ratregion
11343D11Wox2144117695623676956380Ratregion
11344D11Arb1223117695623576956458Ratregion
36281D11Rat4167116279034262790509Ratregion
36342D11Mit9256115938586459386120Ratregion
37512D11Rat50249118284646682846715Ratregion
37096D11Rat92127117410677274106899Ratregion
37942D11Rat46190117885132978851519Ratregion
34823D11Rat32159118610513886105297Ratregion
34912D11Rat30169117449920974499378Ratregion
35094D11Rat2145116752590367526048Ratregion
35154D11Rat102260116073711360737373Ratregion
35859D11Rat1169118245082582450994Ratregion
1 to 20 of 661 rows

Peak: (D11Rat46)
Rat AssemblyChrPosition (strand)Source
GRCr81192,355,848 - 92,356,038 (+)Marker Load Pipeline
mRatBN7.21178,851,329 - 78,851,519 (+)MAPPER
Rnor_6.01182,442,929 - 82,443,118NCBI
Rnor_5.01185,534,123 - 85,534,312UniSTS
RGSC_v3.41181,091,342 - 81,091,531UniSTS
RGSC_v3.41181,091,341 - 81,091,531RGD
RGSC_v3.11181,148,931 - 81,149,120RGD
Celera1177,714,115 - 77,714,304UniSTS
RH 3.4 Map11650.2RGD
RH 3.4 Map11650.2UniSTS
RH 2.0 Map1160.2RGD
SHRSP x BN Map1135.7599RGD
FHH x ACI Map1156.1999RGD


1 to 10 of 31 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)115980279482566553Rat
4889859Pur28Proteinuria QTL 2819.50.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)114545932375190161Rat
10755497Bp388Blood pressure QTL 3882.76arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)111945620576331918Rat
1549848Bvd6Brain ventricular dilatation QTL 63.10.0001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)116611332182169223Rat
10450831Scl80Serum cholesterol level QTL 804.70.01blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)117695713183051965Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)116034659086241447Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)113123913478851519Rat

1 to 10 of 31 rows


Note Type Note Reference
qtl_cross_type intercross 7401255
qtl_general measurement method: At 16 weeks of age animals were individually housed and given self-selection diet (protein, carbohydrate and fat diet in three separate cups); percentage of lipid intake calculated as the relative amount of calories provided by fat against total calories consumed 7401255
qtl_general carbohydrate and fat intake are highly correlated 7401255
qtl_general software package used: multiple interval mapping (MIM); MultiQTL software (version 2.6); ANOVA 7401255
qtl_general number of animals used: 94 F2 females 7401255
qtl_map spans from 101.4-102.6 Mb; peak at 102.0 Mb 7401255