Scl80 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Scl80 (Serum cholesterol level QTL 80) Rattus norvegicus

Symbol: Scl80
Name: Serum cholesterol level QTL 80
RGD ID: 10450831
Previously known as: f12-C (v. small VLDL)
Trait: blood LDL cholesterol amount   (VT:0000181)    
Measurement Type: blood low density lipoprotein cholesterol level   (CMO:0000053)    
LOD Score: 4.7
P Value: 0.01
Variance: 63.0
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21176,957,131 - 83,051,965RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01180,358,408 - 87,200,449RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01180,374,597 - 90,292,014RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41179,125,177 - 85,040,103RGD_MAPPER_PIPELINERGSC3.4
Cross Type: Not Available
Strains Crossed: SHR.BN-(D8Mit5-D8Mgh6)/Ipcv BXH2/Cub 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Measurement Method

Vertebrate Trait

Rat Strain

References

References - curated
# Reference Title Reference Citation
1. Genomic determinants of triglyceride and cholesterol distribution into lipoprotein fractions in the rat. Hodulova M, etal., PLoS One. 2014 Oct 8;9(10):e109983. doi: 10.1371/journal.pone.0109983. eCollection 2014.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
3761Sstsomatostatin117695689676958173Rat
40947157Rpl13a-ps5ribosomal protein L13A, pseudogene 5117708077777081566Rat
1564585Ctdsp1-ps1CTD small phosphatase 1, pseudogene 1117713290877133863Rat
1306974Rtp4receptor (chemosensory) transporter protein 4117723734177249194Rat
620213Masp1MBL associated serine protease 1117733479477405271Rat
1560980Rtp1receptor (chemosensory) transporter protein 1117742298277425498Rat
9082951Ahcy-ps11adenosylhomocysteinase, pseudogene 11117748342577484973Rat
41197952LOC120095747small nucleolar RNA SNORA17117749744877497579Rat
2319156Mast2-ps1microtubule associated serine/threonine kinase 2, pseudogene 1117749966677502443Rat
3676St6gal1ST6 beta-galactoside alpha-2,6-sialyltransferase 1117752683777653474Rat
7644981St6gal1lST6 beta-galactoside alpha-2,6-sialyltransferase 1 like117765253077658971Rat
41048357LOC120095690uncharacterized LOC120095690117765910477672704Rat
628748Adipoqadiponectin, C1Q and collagen domain containing117772191277735644Rat
1310142Rfc4replication factor C subunit 4117774964277764123Rat
1309225Eif4a2eukaryotic translation initiation factor 4A2117776412677770810Rat
41216067Snora4small nucleolar RNA, H/ACA box 4117776632577766464Rat
41192302LOC120095726small nucleolar RNA SNORA63117776665477766782Rat
41259569Snora81small nucleolar RNA, H/ACA box 81117776757977767756Rat
41281933LOC120095727small nucleolar RNA SNORA63117776800277768126Rat
41145464Snord2small nucleolar RNA, C/D box 2117776947577769543Rat
41291360H3f3a-ps2H3.3 histone A, pseudogene 2117780108777801454Rat
40955254Ccnb1ip1-ps4cyclin B1 interacting protein 1, pseudogene 4117780357577804448Rat
1359376Kng1kininogen 1117781275777835555Rat
1584955Prkaa1-ps2protein kinase AMP-activated catalytic subunit alpha 1, pseudogene 2117788197177883466Rat
41297945Prkaa1-ps1protein kinase AMP-activated catalytic subunit alpha 1, pseudogene 1117788807377897420Rat
2980Kng2kininogen 2117791387677936247Rat
1583711Ccnb1ip1-ps2cyclin B1 interacting protein 1, pseudogene 2117794408177945086Rat
1594590Kng2l1kininogen 2-like 1117797879578002976Rat
11471078LOC108352357uncharacterized LOC108352357117800522178012389Rat
1594108Ldha-ps15lactate dehydrogenase A, pseudogene 15117802245478023501Rat
1594092Hrg l1histidine-rich glycoprotein like 1117803937178049353Rat
619808Hrghistidine-rich glycoprotein117805448878069402Rat
69293Fetubfetuin B117808215878093022Rat
2075Ahsgalpha-2-HS-glycoprotein117812138878127998Rat
1307373Dnajb11DnaJ heat shock protein family (Hsp40) member B11117815175078168259Rat
1309604Tbccd1TBCC domain containing 1117816838678205314Rat
1587483Crygscrystallin, gamma S117820717078212273Rat
6489863LOC100911962uncharacterized LOC100911962117824763278249722Rat
2318335Hmgn2-ps1high mobility group nucleosomal binding domain 2, pseudogene 1117832119978321970Rat
7738503LOC102552590uncharacterized LOC102552590117837728378402994Rat
2499Dgkgdiacylglycerol kinase, gamma117838421278579158Rat
41061597LOC120095691uncharacterized LOC120095691117849171778496661Rat
1309590Etv5ETS variant transcription factor 5117860861878666221Rat
11407001Trnam-cau3transfer RNA methionine (anticodon CAU) 3117867870078678771Rat
40999098LOC120095692uncharacterized LOC120095692117869188878709582Rat
1588683Psme3-ps4proteasome activator subunit 3, pseudogene 4117877350878774583Rat
1559972Rpl27al7ribosomal protein L27A like 7117878105878781581Rat
619886Tra2btransformer 2 beta117878888078807252Rat
1305614Igf2bp2insulin-like growth factor 2 mRNA binding protein 2117887440278974392Rat
708378Senp2SUMO specific peptidase 2117898142979018274Rat
1592849Liphlipase H117903222979081625Rat
1591692Tmem41atransmembrane protein 41a117908400579090613Rat
1561227Map3k13mitogen-activated protein kinase kinase kinase 13117909408779235181Rat
41241227LOC120095693small ubiquitin-related modifier 2-like117916345779164088Rat
621441Ehhadhenoyl-CoA hydratase and 3-hydroxyacyl CoA dehydrogenase117924192779275173Rat
11449348LOC108352384uncharacterized LOC108352384117934144479345742Rat
1562339C11h3orf70similar to human chromosome 3 open reading frame 70117934585779396140Rat
1309443Vps8VPS8 subunit of CORVET complex117940223679634234Rat
11402614LOC108352385uncharacterized LOC108352385117942761479433062Rat
41257003LOC120095695uncharacterized LOC120095695117967834779683252Rat
1590533Snw1-ps3SNW domain containing 1, pseudogene 3117974307079744816Rat
2321725Nudt2-ps1nudix hydrolase 2, pseudogene 1117979752679798400Rat
1305602Ephb3Eph receptor B3117984066879859345Rat
41162418LOC120095818U6 spliceosomal RNA117997194179972044Rat
1560559Teddm3transmembrane epididymal family member 3117998898479990143Rat
41315717LOC120095697uncharacterized LOC120095697118003073880054940Rat
7546617LOC102550088uncharacterized LOC102550088118005471980078477Rat
41203638LOC120095698uncharacterized LOC120095698118008421180089447Rat
1585930Tiprl-ps1TOR signaling pathway regulator, pseudogene 1118013607080137293Rat
41352856LOC120095751U1 spliceosomal RNA118016192980162092Rat
1563956Rpl12l2ribosomal protein L12 like 2118016920580169831Rat
620181Chrdchordin118017199480181166Rat
1561203Polr2hRNA polymerase II, I and III subunit H118019201780197468Rat
2361Clcn2chloride voltage-gated channel 2118019774180211657Rat
2322069Fam131afamily with sequence similarity 131, member A118021157780221527Rat
1306144Eif4g1eukaryotic translation initiation factor 4 gamma 1118022191980241958Rat
40973363Snord66small nucleolar RNA, C/D box 66118023015280230226Rat
1305752Psmd2proteasome 26S subunit ubiquitin receptor, non-ATPase 2118024836480258991Rat
7573197LOC102551589uncharacterized LOC102551589118025909080266788Rat
1303039Ece2endothelin-converting enzyme 2118025913080278446Rat
708411Camk2n2calcium/calmodulin-dependent protein kinase II inhibitor 2118028970280290829Rat
7732114Eef1akmt4EEF1A lysine methyltransferase 4118029211380299670Rat
1306004Alg3ALG3, alpha-1,3- mannosyltransferase118030048780306014Rat
1564491Vwa5b2von Willebrand factor A domain containing 5B2118030606780323220Rat
2325484Mir1224microRNA 1224118030690280306986Rat
7741708LOC102551647uncharacterized LOC102551647118032248680342460Rat
1310468Abcf3ATP binding cassette subfamily F member 3118034047680352211Rat
7737779LOC102551795uncharacterized LOC102551795118035226380355743Rat
620135Ap2m1adaptor related protein complex 2 subunit mu 1118035530780364218Rat
1308834Dvl3dishevelled segment polarity protein 3118036544680382641Rat
708380Eif2b5eukaryotic translation initiation factor 2B subunit epsilon118039443380404468Rat
2318744Rps15al2ribosomal protein S15A-like 2118040865680409118Rat
41213514LOC120095699uncharacterized LOC120095699118041571780454559Rat
9338791LOC10369065860S ribosomal protein L15 pseudogene118043419480434834Rat
1598124Rps7-ps3ribosomal protein S7, pseudogene 3118043776080438362Rat
7654032LOC102547398uncharacterized LOC102547398118046153480468553Rat
70913Abcc5ATP binding cassette subfamily C member 5118047380980567257Rat
1586963Cyp2ab1cytochrome P450, family 2, subfamily ab, polypeptide 1118058263380591217Rat
1306191Parlpresenilin associated, rhomboid-like118059405980620506Rat
41116675LOC120095734small nucleolar RNA SNORA13118062492380625057Rat
11486221LOC108352401uncharacterized LOC108352401118072351080725908Rat
1560102Map6d1MAP6 domain containing 1118073414880740377Rat
1566176Yeats2YEATS domain containing 2118074313480829253Rat
727971Klhl24kelch-like family member 24118084362180877649Rat
41260492Trnat-agu24transfer RNA threonine (anticodon AGU) 24118091804980918121Rat
1307521Klhl6kelch-like family member 6118097091781010593Rat
41042846Ewsr1-ps5EWS RNA-binding protein 5118099316280996036Rat
7503836Ewsr1-ps3EWS RNA-binding protein 3118099500380997069Rat
41209682LOC120095700uncharacterized LOC120095700118102557781058687Rat
7489032Mir6323microRNA 6323118105206581052169Rat
70955B3gnt5UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5118114110281153206Rat
1307928Lamp3lysosomal-associated membrane protein 3118115349181224643Rat
1333751Or2aj4bolfactory receptor family 2 subfamily AJ member 4B118124605081246994Rat
1584953Hspa8-ps7heat shock protein family A (Hsp70) member 8, pseudogene 7118125631581258243Rat
1333622Or2aj4olfactory receptor family 1 subfamily O member 4118127860581279546Rat
41341100Or2l13l-ps2olfactory receptor family 2 subfamily L member 13 like, pseudogene 2118130916281310272Rat
1333712Or2l13colfactory receptor family 2 subfamily L member 13C118135126881352206Rat
1334380Or2l5olfactory receptor family 2 subfamily L member 5118137588681376824Rat
1333362Or2l13olfactory receptor family 2 subfamily L member 13118140019781401135Rat
41386553LOC120095813U6 spliceosomal RNA118146047781460584Rat
41275152LOC120095761small nucleolar RNA SNORA17118148185781481980Rat
1333258Or2m12olfactory receptor family 2 subfamily M member 12118148697881487919Rat
6484481Igll2immunoglobulin lambda likepolypeptide 2118155468081911935Rat
2319568Iglc1immunoglobulin lambda constant 1118194796681949822Rat
1584950Hirahistone cell cycle regulator118202446982133212Rat
40943335LOC120095770small nucleolar RNA SNORA17118203589182035985Rat
1565444Mrpl40mitochondrial ribosomal protein L40118213339882139234Rat
1595717C11h22orf39similar to human chromosome 22 open reading frame 39118215599282160235Rat
619822Ufd1ubiquitin recognition factor in ER associated degradation 1118216161882185107Rat
1590928Cdc45cell division cycle 45118218542782210630Rat
68431Cldn5claudin 5118221282282214248Rat
2318135Ppp2cal1protein phosphatase 2 catalytic subunit alpha like 1118227828882280159Rat
41267227LOC120095702uncharacterized LOC120095702118236127882369783Rat
621763Septin5septin 5118237360182379393Rat
621050Gp1bbglycoprotein Ib platelet subunit beta118237821682379393Rat
1307734Tbx1T-box transcription factor 1118240927582419058Rat
1594165Gnb1lG protein subunit beta 1 like118242530182507836Rat
40953398LOC120095703uncharacterized LOC120095703118249327482494166Rat
61960Txnrd2thioredoxin reductase 2118251999682568156Rat
2379Comtcatechol-O-methyltransferase118256805282587642Rat
1306655ArvcfARVCF, delta catenin family member118258813782645832Rat
41048783Scarna14l2small Cajal body-specific RNA 14 like 2118261297182613105Rat
1310348Tango2transport and golgi organization 2 homolog118264597882692574Rat
2325380Mir185microRNA 185118266471682664795Rat
1306365Dgcr8DGCR8 microprocessor complex subunit118270467382737251Rat
7489022Mir1306microRNA 1306118270965182709723Rat
1310418Trmt2atRNA methyltransferase 2 homolog A118273768982742423Rat
1310521Ranbp1RAN binding protein 1118274260382750836Rat
41291498Snora77bsmall nucleolar RNA, H/ACA box 77B118274996782750091Rat
1308875Zdhhc8zinc finger DHHC-type palmitoyltransferase 8118275511082769280Rat
1563782Ccdc188coiled-coil domain containing 188118276973582772062Rat
7525828LOC102555338uncharacterized LOC102555338118277201982781088Rat
620810Rtn4rreticulon 4 receptor118284430982869251Rat
1590932Prodhproline dehydrogenase118291004382927305Rat
1309390Dgcr6DiGeorge syndrome critical region gene 6118292772582932823Rat
1564601Vpreb1bV-set pre-B cell surrogate light chain 1B118300939683010106Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10375D11Mgh1148118256655382566702Ratregion
10376D11Wox6173118256654582566718Ratregion
11291D11Mgh7161117757016877570330Ratregion
11292D11Got72144117757022577570369Ratregion
37512D11Rat50236118284646682846715Ratregion
37942D11Rat46178117885132978851519Ratregion
35859D11Rat1166118245082582450994Ratregion
38382D11Rat45224118118429181184507Ratregion
40082D11Rat82173117847461278474785Ratregion
38800D11Rat43234118305175483051965Ratregion
39356D11Rat41218118299323282993457Ratregion
41952D11Arb2199117747324577473444Ratregion
42958D11Rat103225117937185779372066Ratregion
42959D11Rat90207117973014479730349Ratregion
40870D11Rat55231117946973379469960Ratregion
41612D11Rat54138118219674082196868Ratregion
41692D11Rat89219118216900182169223Ratregion
41756D11Rat91234118097033780970606Ratregion
44847D11Got73300117885134078851641Ratregion
44849D11Got78198117873113978731336Ratregion
60003D11Got74359117838573978386094Ratregion
60004D11Got75210117826250378262713Ratregion
60005D11Got7994118003914180039232Ratregion
60006D11Got80202118097522980975431Ratregion
60007D11Got81218118212658482126804Ratregion
1628497D11Uwm1174118062455880624732Ratregion
1634138D11Cebr1265117842454578424810Ratregion
1634385D11Wox16236118020845080208686Ratregion
7206710UniSTS:4804741173118028968480290857Ratregion
7205898UniSTS:4856331148118028970880290856Ratregion
7193135Ephb3179117984124279841421Ratregion
7192369Ephb31434117984976679851200Ratregion
5035859PMC24644P1786117695715076957936Ratregion
5038870RH127380185118227988482280069Ratregion
5038870RH127380185118227988482280069Ratregion
5039000RH127455193117752706577527258Ratregion
5035512EST9C6137118275064182750778Ratregion
5035540Dgcr8439118270963882710077Ratregion
5035604T03659221118024858880248950Ratregion
5033949RH140729212117737396077374172Ratregion
5026100RH130910201117805462178054822Ratregion
7206152UniSTS:532277491118036780880368299Ratregion
5031486AU048165253117781902377819275Ratregion
5034071RH141250180118013447080134650Ratregion
5034390RH118405153118030575380305906Ratregion
5026572RH132726204118074337580743579Ratregion
5029359RH144497206118268436482684570Ratregion
5034766AI104888250118087377180874021Ratregion
5026808RH133611150117972528779725437Ratregion
5027077RH70256194117984074079840934Ratregion
5032477RH126681213117879516678795379Ratregion
5035380BE115254164118209172882091892Ratregion
5035190AW528025186118039529280395595Ratregion
5035202AW535442151117897410778974258Ratregion
5035228BM390883154118066368080663834Ratregion
5027501X5146895117695803876958134Ratregion
5032977RH137176204118034057680340780Ratregion
5027647BB16507674117820047878200552Ratregion
5025292RH127760186117845908878459274Ratregion
5028111Z49086200117984074079840940Ratregion
5028179D16Mit101157117710697677107133Ratregion
5025616RH129005211117738553777385748Ratregion
5025800RH129723220117752691377527133Ratregion
5051901RH94723169118258739382587563Ratregion
5051917RH94733144117857675978576903Ratregion
5056437RH144378161118026329180263452Ratregion
5054021RH142985194118250344982503643Ratregion
5052163RH94876259117695750776957766Ratregion
5055459RH143813175118073462380734798Ratregion
5054785RH143424108118021801280218120Ratregion
5057894BI277248166118024850080248666Ratregion
5058540AI555746203118056696880567171Ratregion
5056829RH144604181118238087682381057Ratregion
5055453RH143810265118050603180506296Ratregion
5059044BE102735203118266236682662570Ratregion
5058510AW523989170117921945979219629Ratregion
5059086BF387449156117943083079430986Ratregion
5059248BF387879153118018877280188925Ratregion
5059324BG377348150117747731677477466Ratregion
5050990RH134374203117808220378082406Ratregion
5051094RH134436181117776420977764390Ratregion
5051302RH134555185118216191782162102Ratregion
5054211RH143094142118021220380212345Ratregion
5051655AW554757134117898316878983302Ratregion
5044170RH130450206118191511681915322Ratregion
5044170RH130450206118194952381949729Ratregion
5043282RH129936220117774659577746815Ratregion
5041146RH128689187118035531480355501Ratregion
5044674RH130739188118030608680306274Ratregion
5044682RH130743198118084370480843902Ratregion
5044344RH130549206118243289582433101Ratregion
5044360RH130558219117824787978248098Ratregion
5045822RH131398184118122160381221787Ratregion
5049088RH133279213117723821277238425Ratregion
5046598RH131845188118105834781058536Ratregion
5048034RH132670206117939570979395915Ratregion
5048092RH132703195118074337580743570Ratregion
5049372RH133443184118162352881623712Ratregion
5049382RH133449152118237923482379386Ratregion
5047066RH132114181117813234278132523Ratregion
5041962RH129159215118019370880193923Ratregion
5041978RH129168192117898282378983015Ratregion
5047310RH132254186117940225179402437Ratregion
5047412RH132313210118046156780461777Ratregion
5039898RH127971220117695784676958066Ratregion
5042542RH129497217117909035679090573Ratregion
5042708RH129598165118101006181010226Ratregion
5039896RH127970186118036554780365733Ratregion
5040022RH128045194118258717982587373Ratregion
5040938RH128570188118213745282137640Ratregion
5041058RH128639194118074204880742242Ratregion
5041544RH128918182118252001582520197Ratregion
5074948RH138311158118237997882380136Ratregion
5071946RH135376200117888801078888210Ratregion
5072126RH136666203117866444678664649Ratregion
5072460RH136862189118273778382737972Ratregion
5076052RH138951155118270422082704375Ratregion
5080708RH141735198117897367478973872Ratregion
5077298RH139676217117857879978579016Ratregion
5078158RH140177204117927461779274821Ratregion
5080124RH141397151118029211280292263Ratregion
5070870RH134753190117939452379394713Ratregion
5072930RH137136181118243478082434961Ratregion
5080276RH141486185117898148478981669Ratregion
5080312RH141507205117998891979989119Ratregion
5080350RH141529196118221288882213084Ratregion
5070902RH134772208118114138581141593Ratregion
5073568RH137511187117815187378152060Ratregion
5070742RH134678201117939391579394116Ratregion
5061776AI715998132118213903182139163Ratregion
5067202AU047899177117816282478163001Ratregion
5068534AU047088174118062441280624584Ratregion
5070177RH94517147118018799480188141Ratregion
5069316AU046579104118239659382396697Ratregion
5060958AA874911196118035558380355779Ratregion
5064442AI501553145117939243579392580Ratregion
5060254BG378170179117907616879076347Ratregion
5065202BE121163157117921844179218598Ratregion
5062196BE106303201118215382182154022Ratregion
5062524BF403357192118274050582740697Ratregion
5062720AI71656491118039467280394763Ratregion
5064338AI763447140118269221682692357Ratregion
5061096AW532277150118017065880170808Ratregion
5064576BF399377165117943114279431307Ratregion
5066232PMC123023P2187117695780176957988Ratregion
5063136BI295978183117758173577581918Ratregion
5064672BF399547104117841043478410538Ratregion
5066294PMC139890P1132117776665177766783Ratregion
5082311BE119158159118268701582687174Ratregion
5086355AA850138185118191157681911761Ratregion
5086355AA850138185118194598481946169Ratregion
5087422Ephb3695117984072579841420Ratregion
5087838Eif4a2188117776652777766952Ratregion
5087922Hira157118213247082132627Ratregion
5089961AU049467185117785623477856419Ratregion
5083055BF390716153118276904282769195Ratregion
5088064Prodh135118292663682926859Ratregion
5083747AI599402207117812150878121715Ratregion
5090435AU049748216117723367177233887Ratregion
5090635AU049871121117873121678731337Ratregion
5081517BE117128163117888628178886444Ratregion
5081703BF40829795117892842978928524Ratregion
5084416AI17673696117772202877722124Ratregion
5090159AU049586167118272397282724139Ratregion
5081869BI273900216118036460580364821Ratregion
5081989BE118996191118021429180214482Ratregion
5083175BF390931198118034009780340295Ratregion
5083799AI599574178118236141482361592Ratregion
5084044AI40823894117820537078205464Ratregion
5502589RH12546195117815197378152068Ratregion
5507557D18S1297114118216748082168493Ratregion
5503240UniSTS:237454224118273693782737161Ratregion
5503244UniSTS:237455213118275049682750709Ratregion
5507707SST-112F84117695713176957836Ratregion
5503615UniSTS:465379640118221346682214106Ratregion
5503933UniSTS:256695853117695697476957827Ratregion
5504488PMC22838P1107118227846382278570Ratregion
5504488PMC22838P1107118227846382278570Ratregion
5505298Ppp2ca468118227860482279072Ratregion
5505300Ppp2ca51118227903982279090Ratregion
5506469G35720169117856980678569975Ratregion
5500272D22S1095E102118202458182024683Ratregion
5500298D20S100580117776452777764607Ratregion
5503246UniSTS:237474226117776898477769210Ratregion
5501675Dgcr60118292792582929587Ratregion
5505390Ewsr10118099472480995517Ratregion
5502981Ccnb1ip1500117780377777804277Ratregion
5502465RH1249400118292040082921801Ratregion
Position Markers

Flank 1: (SST-112F)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21176,957,131 - 76,957,836 (+)MAPPER
Rnor_6.01180,358,408 - 80,359,112NCBI
Rnor_5.01180,374,597 - 80,375,301UniSTS
RGSC_v3.41179,125,177 - 79,125,881UniSTS
Celera1175,836,492 - 75,837,196UniSTS
Cytogenetic Map11q23UniSTS
Flank 2: (D11Rat43)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21183,051,754 - 83,051,965 (+)MAPPER
Rnor_6.01187,200,239 - 87,200,449NCBI
Rnor_5.01190,291,804 - 90,292,014UniSTS
RGSC_v3.41185,039,893 - 85,040,103UniSTS
RGSC_v3.41185,039,892 - 85,040,103RGD
RGSC_v3.11185,080,490 - 85,080,700RGD
Celera1181,827,756 - 81,827,986UniSTS
RH 3.4 Map11711.3RGD
RH 3.4 Map11711.3UniSTS
SHRSP x BN Map1141.6299UniSTS
SHRSP x BN Map1141.6299RGD
FHH x ACI Map1157.2499RGD


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)113123913478851519Rat
70180BpQTLcluster10Blood pressure QTL cluster 103.19arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)113491804179918041Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)114094618882566702Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)114428575982566702Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)115445753486241447Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)115513672982993457Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)115635142486241447Rat
631506Bp104Blood pressure QTL 1042.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)115980279482566545Rat
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)115980279482566553Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)116034659086241447Rat
1549848Bvd6Brain ventricular dilatation QTL 63.10.0001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)116611332182169223Rat
634339Niddm50Non-insulin dependent diabetes mellitus QTL 503.32blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)116642214886241447Rat
1354593Stl12Serum triglyceride level QTL 123.36blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)116642214886241447Rat
1354656Bvd3Brain ventricular dilatation QTL 33.640.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)116944607082846715Rat
10450831Scl80Serum cholesterol level QTL 804.70.01blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)117695713183051965Rat
2302043Pia27Pristane induced arthritis QTL 2718.60.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)118256654583440803Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general number of animals used: 8-13 males, 4 month old from 15 PXO recombinant inbred strains 10402111
qtl_general software used: STATISTICA 10 CZ; ANOVA 10402111
qtl_general measurement method: 4 month old male rats were fed high-sucrose diet for 1 week; blood samples were taken from the tail vein after overnight fasting, lipoprotein fractions were determined by HPLC 10402111
qtl_general confidence interval: 79,418-84,879 Kbp 10402111
qtl_general 65 genes are present in this region 10402111
qtl_general 12th fraction of very small LDL 10402111