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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Spontaneous Abortions | | ISO | RGD:1348659 | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:18539642 | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Spontaneous Abortions | | ISO | RGD:1348659 | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:18539642 | |
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1. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | GOA data from the GO Consortium |
3. | MGD data from the GO Consortium |
4. | NCBI rat LocusLink and RefSeq merged data July 26, 2002 |
5. | Olivier E, etal., Biochem J 2000 Sep 1;350 Pt 2:589-97. |
6. | RGD automated data pipeline |
7. | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
8. | RGD automated import pipeline for gene-chemical interactions |
9. | Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11. |
10. | Tentative Sequence Data IDs. TIGR Gene Index, Rat Data |
Fetub (Rattus norvegicus - Norway rat) |
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FETUB (Homo sapiens - human) |
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Fetub (Mus musculus - house mouse) |
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Fetub (Chinchilla lanigera - long-tailed chinchilla) |
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FETUB (Pan paniscus - bonobo/pygmy chimpanzee) |
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FETUB (Canis lupus familiaris - dog) |
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Fetub (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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FETUB (Sus scrofa - pig) |
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FETUB (Chlorocebus sabaeus - green monkey) |
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Fetub (Heterocephalus glaber - naked mole-rat) |
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RH134374 |
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The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | 21 | 21 | 21 | ||||||||||
Medium | 20 | 18 | 18 | 8 | 2 | 11 | |||||||
Low | 3 | 16 | 2 | 19 | 2 | 4 | 4 | 10 | 17 | 27 | 4 | ||
Below cutoff | 1 | 13 | 4 | 5 | 18 | 8 | 7 | 4 |
RefSeq Transcripts | NM_001309522 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
NM_053348 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AJ242926 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
BC070508 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH473999 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ209398 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ209449 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ209518 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ209610 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ209832 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ210294 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ210335 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ211050 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ211248 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ218476 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ218557 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ218709 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ218884 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ218893 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ218905 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ218930 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ218949 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ219048 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ219152 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ219170 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ219190 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ219266 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ219352 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ219426 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ219454 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ219459 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ219500 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ219513 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ219733 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JACYVU010000222 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
MW395163 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000048739 ⟹ ENSRNOP00000051504 | ||||||||||||
RefSeq Status: | |||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000100999 ⟹ ENSRNOP00000082888 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000114827 ⟹ ENSRNOP00000097728 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001309522 ⟹ NP_001296451 | ||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_053348 ⟹ NP_445800 | ||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
Protein RefSeqs | NP_001296451 | (Get FASTA) | NCBI Sequence Viewer |
NP_445800 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAH70508 | (Get FASTA) | NCBI Sequence Viewer |
CAB62543 | (Get FASTA) | NCBI Sequence Viewer | |
EDL78062 | (Get FASTA) | NCBI Sequence Viewer | |
EDL78063 | (Get FASTA) | NCBI Sequence Viewer | |
Q9QX79 | (Get FASTA) | NCBI Sequence Viewer | |
QST77202 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_445800 ⟸ NM_053348 |
- Peptide Label: | precursor |
- UniProtKB: | Q9QX79 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | NP_001296451 ⟸ NM_001309522 |
- Peptide Label: | isoform 1 precursor |
- UniProtKB: | Q6IRS6 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000051504 ⟸ ENSRNOT00000048739 |
RefSeq Acc Id: | ENSRNOP00000097728 ⟸ ENSRNOT00000114827 |
RefSeq Acc Id: | ENSRNOP00000082888 ⟸ ENSRNOT00000100999 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q9QX79-F1-model_v2 | AlphaFold | Q9QX79 | 1-378 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13698249 | ||||||||
Promoter ID: | EPDNEW_R8774 | ||||||||
Type: | initiation region | ||||||||
Name: | Fetub_1 | ||||||||
Description: | fetuin B | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | RGD:69293 | AgrOrtholog |
BioCyc Gene | G2FUF-20830 | BioCyc |
Ensembl Genes | ENSRNOG00000001806 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Protein | ENSRNOP00000051504 | ENTREZGENE, UniProtKB/TrEMBL |
ENSRNOP00000082888 | ENTREZGENE | |
Ensembl Transcript | ENSRNOT00000048739 | ENTREZGENE, UniProtKB/TrEMBL |
ENSRNOT00000100999 | ENTREZGENE | |
IMAGE_CLONE | IMAGE:7099154 | IMAGE-MGC_LOAD |
InterPro | Cystatin_dom | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Cystatin_Fetuin_B | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Prot_inh_fetuin_CS | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | rno:83928 | UniProtKB/Swiss-Prot |
MGC_CLONE | MGC:91528 | IMAGE-MGC_LOAD |
NCBI Gene | 83928 | ENTREZGENE |
Pfam | Cystatin | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PhenoGen | Fetub | PhenoGen |
PROSITE | CYSTATIN_FETUIN_B | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
FETUIN_1 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
FETUIN_2 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
SMART | SM00043 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
TIGR | TC218955 | |
UniProt | A0A8A1UFB2_RAT | UniProtKB/TrEMBL |
FETUB_RAT | UniProtKB/Swiss-Prot | |
Q6IRS6 | ENTREZGENE, UniProtKB/TrEMBL | |
Q9QX79 | ENTREZGENE | |
UniProt Secondary | F1LN83 | UniProtKB/Swiss-Prot |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2008-10-23 | Fetub | fetuin B | Fetub | fetuin beta | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2007-10-15 | Fetub | fetuin beta | Fet_mapped | fetuin phosphoprotein (mapped) | Data Merged | 737654 | APPROVED |
2005-11-17 | Fet_mapped | fetuin phosphoprotein (mapped) | Fet | Fetuin (phosphoprotein, 63 kDa) | Symbol and Name updated | 1556543 | APPROVED |
2002-06-10 | Fet | Fetuin (phosphoprotein, 63 kDa) | Symbol and Name status set to approved | 70586 | APPROVED | ||
2002-06-10 | Fetub | fetuin beta | Name updated | 70584 | APPROVED |
Note Type | Note | Reference |
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gene_physical_interaction | forms a fetuin-mineral complex with calcium phosphate and matrix Gla protein in vitro | 1300185 |
gene_regulation | down-regulated during experimentally induced inflammation | 68778 |