LOC120095726 (small nucleolar RNA SNORA63) - Rat Genome Database

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Gene: LOC120095726 (small nucleolar RNA SNORA63) Rattus norvegicus
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Symbol: LOC120095726
Name: small nucleolar RNA SNORA63
RGD ID: 41192302
Description: Orthologous to human SNORA63E (small nucleolar RNA, H/ACA box 63E).
Type: snorna
RefSeq Status: MODEL
Previously known as: SNORA63
RGD Orthologs
Human
Mouse
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81191,271,258 - 91,271,386 (-)NCBIGRCr8
mRatBN7.21177,766,654 - 77,766,782 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1177,766,654 - 77,766,782 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1181,375,575 - 81,375,703 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map11q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
LOC120095726RatCurrarino syndrome  ISOSNORA63E (Homo sapiens)8554872ClinVar Annotator: match by term: Currarino triadClinVarPMID:21681106 and PMID:27549440



LOC120095726
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81191,271,258 - 91,271,386 (-)NCBIGRCr8
mRatBN7.21177,766,654 - 77,766,782 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1177,766,654 - 77,766,782 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1181,375,575 - 81,375,703 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map11q23NCBI
SNORA63E
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383183,453,814 - 183,453,946 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3183,453,814 - 183,453,944 (+)EnsemblGRCh38hg38GRCh38
GRCh373183,171,602 - 183,171,734 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map3q27.1NCBI
T2T-CHM13v2.03186,261,235 - 186,261,367 (+)NCBIT2T-CHM13v2.0
Gm25852
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39697,524,399 - 97,524,528 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl697,524,399 - 97,524,528 (-)EnsemblGRCm39 Ensembl
GRCm38697,547,438 - 97,547,567 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl697,547,438 - 97,547,567 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map6D3NCBI
LOC119867565
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha3423,443,902 - 23,444,033 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03419,269,943 - 19,270,074 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3419,269,943 - 19,270,074 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13419,301,093 - 19,301,224 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03419,301,096 - 19,301,227 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03419,528,969 - 19,529,100 (+)NCBIUU_Cfam_GSD_1.0

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1 to 10 of 20 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)115980279482566553Rat
70180BpQTLcluster10Blood pressure QTL cluster 103.19arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)113491804179918041Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
634339Niddm50Non-insulin dependent diabetes mellitus QTL 503.32blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)116642214886241447Rat
1549848Bvd6Brain ventricular dilatation QTL 63.10.0001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)116611332182169223Rat
10450831Scl80Serum cholesterol level QTL 804.70.01blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)117695713183051965Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)116034659086241447Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)113123913478851519Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)114094618882566702Rat

1 to 10 of 20 rows





RefSeq Transcripts XR_005491521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000088758
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1177,766,654 - 77,766,782 (-)Ensembl
RefSeq Acc Id: XR_005491521
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81191,271,258 - 91,271,386 (-)NCBI
mRatBN7.21177,766,654 - 77,766,782 (-)NCBI

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-20852 BioCyc
Ensembl Genes ENSRNOG00000056834 Ensembl
NCBI Gene LOC120095726 ENTREZGENE
PhenoGen LOC120095726 PhenoGen
RatGTEx ENSRNOG00000056834 RatGTEx
RNAcentral URS0000710DF0 RNACentral


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120095726  small nucleolar RNA SNORA63  SNORA63  Small nucleolar RNA SNORA63  Data merged from RGD:15010553 737654 PROVISIONAL
2021-01-27 LOC120095726  small nucleolar RNA SNORA63      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 SNORA63  Small nucleolar RNA SNORA63      Symbol and Name status set to provisional 45752 PROVISIONAL