LOC120095726 (small nucleolar RNA SNORA63) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: LOC120095726 (small nucleolar RNA SNORA63) Rattus norvegicus
Analyze
Symbol: LOC120095726
Name: small nucleolar RNA SNORA63
RGD ID: 41192302
Description: ASSOCIATED WITH Currarino syndrome (ortholog)
Type: snorna
RefSeq Status: MODEL
Previously known as: SNORA63
RGD Orthologs
Human
Mouse
Dog
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81191,271,258 - 91,271,386 (-)NCBIGRCr8
mRatBN7.21177,766,654 - 77,766,782 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1177,766,654 - 77,766,782 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1181,375,575 - 81,375,703 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map11q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
LOC120095726
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81191,271,258 - 91,271,386 (-)NCBIGRCr8
mRatBN7.21177,766,654 - 77,766,782 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1177,766,654 - 77,766,782 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1181,375,575 - 81,375,703 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map11q23NCBI
SNORA63E
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383183,453,814 - 183,453,946 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3183,453,814 - 183,453,944 (+)EnsemblGRCh38hg38GRCh38
GRCh373183,171,602 - 183,171,734 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map3q27.1NCBI
T2T-CHM13v2.03186,261,235 - 186,261,367 (+)NCBIT2T-CHM13v2.0
Gm25852
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39697,524,399 - 97,524,528 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl697,524,399 - 97,524,528 (-)EnsemblGRCm39 Ensembl
GRCm38697,547,438 - 97,547,567 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl697,547,438 - 97,547,567 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map6D3NCBI
LOC119867565
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha3423,443,902 - 23,444,033 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03419,269,943 - 19,270,074 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3419,269,943 - 19,270,074 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13419,301,093 - 19,301,224 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03419,301,096 - 19,301,227 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03419,528,969 - 19,529,100 (+)NCBIUU_Cfam_GSD_1.0


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)113123913478851519Rat
70180BpQTLcluster10Blood pressure QTL cluster 103.19arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)113491804179918041Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)114094618882566702Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)114428575982566702Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)115445753486241447Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)115513672982993457Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)115635142486241447Rat
631506Bp104Blood pressure QTL 1042.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)115980279482566545Rat
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)115980279482566553Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)116034659086241447Rat
1549848Bvd6Brain ventricular dilatation QTL 63.10.0001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)116611332182169223Rat
634339Niddm50Non-insulin dependent diabetes mellitus QTL 503.32blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)116642214886241447Rat
1354593Stl12Serum triglyceride level QTL 123.36blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)116642214886241447Rat
1354656Bvd3Brain ventricular dilatation QTL 33.640.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)116944607082846715Rat
10450831Scl80Serum cholesterol level QTL 804.70.01blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)117695713183051965Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005491521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000088758
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1177,766,654 - 77,766,782 (-)Ensembl
RefSeq Acc Id: XR_005491521
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81191,271,258 - 91,271,386 (-)NCBI
mRatBN7.21177,766,654 - 77,766,782 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-20852 BioCyc
Ensembl Genes ENSRNOG00000056834 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000088758 ENTREZGENE
NCBI Gene LOC120095726 ENTREZGENE
PhenoGen LOC120095726 PhenoGen
RatGTEx ENSRNOG00000056834 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120095726  small nucleolar RNA SNORA63  SNORA63  Small nucleolar RNA SNORA63  Data merged from RGD:15010553 737654 PROVISIONAL
2021-01-27 LOC120095726  small nucleolar RNA SNORA63      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 SNORA63  Small nucleolar RNA SNORA63      Symbol and Name status set to provisional 45752 PROVISIONAL