Bvd6 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Bvd6 (Brain ventricular dilatation QTL 6) Rattus norvegicus

Symbol: Bvd6
Name: Brain ventricular dilatation QTL 6
RGD ID: 1549848
Trait: brain ventricle morphology trait   (VT:0000822)    
Measurement Type: hydrocephalus severity score   (CMO:0001881)    
LOD Score: 3.1
P Value: 1.0E-4
Variance: 4.5
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21166,113,321 - 82,169,223RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01169,342,319 - 86,312,439RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01172,432,813 - 89,414,405RGDRnor5.0
RGSC_v3.41167,930,910 - 87,759,784RGDRGSC3.4
RGSC_v3.11167,988,499 - 87,800,381RGD
Cross Type: Not Available
Strains Crossed: F344 HTX/Hcj 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Candidate Gene Status
Sst is a candidate Gene for Bvd6

Disease Annotations     Click to see Annotation Detail View
hydrocephalus  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
hydrocephaly  (IAGP)
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
F344  (IEA)
HTX/Hcj  (IEA)

References

References - curated
1. Jones HC, etal., Mamm Genome 2001 Jan;12(1):22-6.
2. Jones HC, etal., Mamm Genome 2001 Jan;12(1):22-6.
Related QTLs

Related QTL Description Reference
Bvd3 sub_region RGD:68196


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2499Dgkgdiacylglycerol kinase, gamma117838421278579158Rat
68422Cldn1claudin 1117442156974436728Rat
2724Gp5glycoprotein V (platelet)117044361370446705Rat
70551Lrrc15leucine rich repeat containing 15117046977570484268Rat
619886Tra2btransformer 2 beta homolog117878888078807252Rat
69293Fetubfetuin B117808215878093022Rat
2137Apodapolipoprotein D116943126169452306Rat
3761Sstsomatostatin117695689676958173Rat
2361Clcn2chloride voltage-gated channel 2118019774180211657Rat
70515Pcyt1aphosphate cytidylyltransferase 1A, choline116831386068357828Rat
2980Kng2kininogen 2117791387677936247Rat
628793Rpl35al1ribosomal protein L35a-like 1116772603467730023Rat
708547Muc13mucin 13, cell surface associated116695720866980264Rat
727841Ccdc50coiled-coil domain containing 50117333279873395333Rat
620322Cldn16claudin 16117429029874309588Rat
2893Il1rapinterleukin 1 receptor accessory protein117406299974199530Rat
621331Muc4mucin 4, cell surface associated116800824568053229Rat
620213Masp1MBL associated serine protease 1117733479477405271Rat
727971Klhl24kelch-like family member 24118084362180877693Rat
727977Uts2burotensin 2B117342438573439429Rat
619822Ufd1ubiquitin recognition factor in ER associated degradation 1118216161882185107Rat
620135Ap2m1adaptor related protein complex 2 subunit mu 1118035530780364218Rat
62081Hes1hes family bHLH transcription factor 1117070576370708176Rat
628730Slc12a8solute carrier family 12, member 8116711687667266548Rat
628869Itgb5integrin subunit beta 5116682842866944231Rat
621099Ppp1r2protein phosphatase 1, regulatory (inhibitor) subunit 2116947267669494468Rat
619808Hrghistidine-rich glycoprotein117805448878069402Rat
621441Ehhadhenoyl-CoA hydratase and 3-hydroxyacyl CoA dehydrogenase117924192779275173Rat
708411Camk2n2calcium/calmodulin-dependent protein kinase II inhibitor 2118028970280290829Rat
1305170Cpn2carboxypeptidase N subunit 2117048608070495937Rat
1304865Muc20mucin 20, cell surface associated116798772968003997Rat
628748Adipoqadiponectin, C1Q and collagen domain containing117772191277735644Rat
708380Eif2b5eukaryotic translation initiation factor 2B subunit epsilon118039443380404468Rat
70488Tfrctransferrin receptor116816341368185257Rat
62063Zfp148zinc finger protein 148116727645567385803Rat
620863Tp63tumor protein p63117483885875049764Rat
1304604Senp5SUMO specific peptidase 5116878469968819569Rat
2505Dlg1discs large MAGUK scaffold protein 1116891188369103230Rat
620131Bdh13-hydroxybutyrate dehydrogenase 1116930253469343173Rat
621865Kalrnkalirin, RhoGEF kinase116619815566803166Rat
1304568P3h2prolyl 3-hydroxylase 2117463426774775422Rat
620181Chrdchordin118017199480181166Rat
1307521Klhl6kelch-like family member 6118097091781010593Rat
70913Abcc5ATP binding cassette subfamily C member 5118047380980567257Rat
708378Senp2SUMO specific peptidase 2117898142979018274Rat
1306899Fyttd1forty-two-three domain containing 1116787796767907565Rat
1305752Psmd2proteasome 26S subunit ubiquitin receptor, non-ATPase 2118024836480258991Rat
1306346Ubxn7UBX domain protein 7116842789668460100Rat
61953Pak2p21 (RAC1) activated kinase 2116870807068766622Rat
1307373Dnajb11DnaJ heat shock protein family (Hsp40) member B11117815175078168259Rat
620163Fgf12fibroblast growth factor 12117199704972564965Rat
1305422Rubcnrubicon autophagy regulator116790753467964347Rat
1306004Alg3ALG3, alpha-1,3- mannosyltransferase118030048780306014Rat
1304790Fam43afamily with sequence similarity 43, member A117012825370131401Rat
1305602Ephb3Eph receptor B3117984066879859467Rat
1311100Slc51asolute carrier family 51 subunit alpha116829908668313485Rat
1309089Lsg1large 60S subunit nuclear export GTPase 1117013291970168526Rat
1307289Pigxphosphatidylinositol glycan anchor biosynthesis, class X116868712668703067Rat
1560559RGD1560559similar to RIKEN cDNA 2310042E22117998898479990143Rat
1307294Osbpl11oxysterol binding protein-like 11116753366967616795Rat
1309443Vps8VPS8 subunit of CORVET complex117940223679634234Rat
1359376Kng1kininogen 1117781275777835555Rat
1310468Abcf3ATP binding cassette subfamily F member 3118034047680352211Rat
1333751Olr1565olfactory receptor 1565118124605081246994Rat
1559643Mb21d2Mab-21 domain containing 2117182574871924770Rat
1311861Fbxo45F-box protein 45116855143068567053Rat
1333712Olr1567olfactory receptor 1567118135126881352206Rat
1333622Olr1566olfactory receptor 1566118127860581279546Rat
1311465Lmlnleishmanolysin like peptidase116765624167725889Rat
1310771Nrrosnegative regulator of reactive oxygen species116862864168646152Rat
1333362Olr1569olfactory receptor 1569118140019781401135Rat
1309014Zdhhc19zinc finger DHHC-type palmitoyltransferase 19116827784768289110Rat
1311606IqcgIQ motif containing G116773011767771170Rat
1309225Eif4a2eukaryotic translation initiation factor 4A2117776412677770810Rat
1306200Lrch3leucine rich repeats and calponin homology domain containing 3116777249967872269Rat
1306226Tprg1tumor protein p63 regulated 1117532247075449907Rat
1309485Plaat1phospholipase A and acyltransferase 1117151749271537142Rat
1305957Tnk2tyrosine kinase, non-receptor, 2116811472568154254Rat
1308154Xxylt1xyloside xylosyltransferase 1116965848169790938Rat
1308155Meltfmelanotransferrin116888444668906300Rat
1306927Atp13a4ATPase 13A4117122219671359933Rat
1306974Rtp4receptor (chemosensory) transporter protein 4117723734177249194Rat
1306792Atp13a5ATPase 13A5117137638871515789Rat
1307107Pigzphosphatidylinositol glycan anchor biosynthesis, class Z116883179068835647Rat
1309345Bcl6BCL6, transcription repressor117685409076877389Rat
1308834Dvl3dishevelled segment polarity protein 3118036544680382641Rat
1306191Parlpresenilin associated, rhomboid-like118059405980620506Rat
1309604Tbccd1TBCC domain containing 1117816838678205314Rat
2075Ahsgalpha-2-HS-glycoprotein117811790378145956Rat
1310535LppLIM domain containing preferred translocation partner in lipoma117578732676426646Rat
1310675Ropn1rhophilin associated tail protein 1116609785466127148Rat
1307928Lamp3lysosomal-associated membrane protein 3118115349181224643Rat
1309590Etv5ETS variant transcription factor 5117860861878666221Rat
1305614Igf2bp2insulin-like growth factor 2 mRNA binding protein 2117887440278974392Rat
1306144Eif4g1eukaryotic translation initiation factor 4 gamma, 1118022191980241958Rat
1310142Rfc4replication factor C subunit 4117774964277764123Rat
1333258Olr1570olfactory receptor 1570118148697881487919Rat
1309763Snx4sorting nexin 4116746087267518143Rat
1562939Acap2ArfGAP with coiled-coil, ankyrin repeat and PH domains 2116953848769654156Rat
1303039Ece2endothelin-converting enzyme 2118025913080299685Rat
1303110Ostnosteocrin117344216773478577Rat
1562415RGD1562415similar to 40S ribosomal protein S26117035922770359796Rat
1563535RGD1563535similar to Myosin light polypeptide 6 (Myosin light chain alkali 3)117644843876448787Rat
1564585RGD1564585similar to golli-interacting protein117713290877133863Rat
1563597Dynlt2bdynein light chain Tctex-type 2B116835913868367573Rat
1563956RGD1563956similar to 60S ribosomal protein L12118016920580169831Rat
1561203Polr2hRNA polymerase II, I and III subunit H118019201780197468Rat
1559546Wdr53WD repeat domain 53116854264768551190Rat
1563170Gmncgeminin coiled-coil domain containing117383625573847698Rat
1560486Tm4sf19transmembrane 4 L six family member 19116837294568386192Rat
1562339RGD1562339RGD1562339117934579279396140Rat
621352Cep19centrosomal protein 19116867786968687117Rat
1560980Rtp1receptor (chemosensory) transporter protein 1117742298277425498Rat
708423Opa1OPA1, mitochondrial dynamin like GTPase117110810071185170Rat
70955B3gnt5UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5118114110281153206Rat
1561227Map3k13mitogen-activated protein kinase kinase kinase 13117909408779235181Rat
1559972RGD1559972similar to ribosomal protein L27a117878105878781581Rat
1334380Olr1568olfactory receptor 1568118137588681376824Rat
1311908Umpsuridine monophosphate synthetase116680610766816520Rat
1565444Mrpl40mitochondrial ribosomal protein L40118213339882139234Rat
1586963Cyp2ab1cytochrome P450, family 2, subfamily ab, polypeptide 1118058263380591217Rat
3676St6gal1ST6 beta-galactoside alpha-2,6-sialyltransferase 1117752683777653474Rat
1564491Vwa5b2von Willebrand factor A domain containing 5B2118030606780323220Rat
1586472LOC688628similar to G2/mitotic-specific cyclin-B1116632362566327579Rat
1584950Hirahistone cell cycle regulator118202446982133212Rat
1562500Smco1single-pass membrane protein with coiled-coil domains 1116851211368514999Rat
1560102Map6d1MAP6 domain containing 1118073414880740377Rat
1564641Heg1heart development protein with EGF-like domains 1116700695467095020Rat
1565541RGD1565541similar to transcription elongation factor B (SIII), polypeptide 2117061778170618341Rat
1584953LOC363825similar to heat shock protein 8118125631581258243Rat
1584955LOC363815hypothetical LOC363815117788197177883466Rat
1563737Tmem44transmembrane protein 44117018112070216958Rat
1565722Rtp2receptor (chemosensory) transporter protein 2117691790476930760Rat
1566176Yeats2YEATS domain containing 2118074313480829253Rat
1585930LOC679659similar to TIP41, TOR signalling pathway regulator-like118013607080137293Rat
1589781LOC288019similar to eukaryotic translation elongation factor 1 alpha 1117363323773634788Rat
1590881Atp13a3ATPase 13A3117036499870442005Rat
1590533LOC681827similar to Nuclear protein SkiP (Ski-interacting protein) (SNW1 protein) (Nuclear receptor coactivator NCoA-62)117974307079744816Rat
1583711LOC501783similar to cyclin B1 interacting protein 1117794408177945086Rat
1590724LOC679233similar to heterogeneous nuclear ribonucleoprotein H2117528348675307166Rat
1561572RGD1561572similar to splicing factor 3a, subunit 2117576854875769907Rat
1587483Crygscrystallin, gamma S117820717078212273Rat
1585168Rnf168ring finger protein 168116848631368508296Rat
1596124Scand3-ps4SCAN domain containing 3, pseudogene 4116948069869481154Rat
1592849Liphlipase H117903222979081625Rat
1595717LOC498122similar to CG15908-PA118215599282160235Rat
1594590Kng2l1kininogen 2-like 1117797879578002976Rat
1596034LOC690476similar to ubiquitin carboxyl-terminal hydrolase CYLD117170499271713933Rat
1591692Tmem41atransmembrane protein 41a117908400579090613Rat
1594108LOC681526similar to L-lactate dehydrogenase A chain (LDH-A) (LDH muscle subunit) (LDH-M)117802245478023501Rat
1588683LOC691006similar to proteaseome (prosome, macropain) 28 subunit, 3117877350878774583Rat
1594092LOC681544similar to histidine-rich glycoprotein117803937178049353Rat
1596188Ncbp2nuclear cap binding protein subunit 2116882102668829863Rat
1597039LOC498093similar to acidic ribosomal phosphoprotein P0116818532968194901Rat
1598124LOC679946similar to 40S ribosomal protein S7 (S8)118043776080438362Rat
1594670LOC690594similar to poly(A) binding protein, cytoplasmic 4 isoform 2117439745074399183Rat
2319156LOC100361924microtubule associated serine/threonine kinase 2-like117749966677502443Rat
2318744Rps15al2ribosomal protein S15A-like 2118040865680409118Rat
2318248LOC10036583940S ribosomal protein S3a-like117614280076143706Rat
2318335LOC100362351hCG2040565-like117832119978321970Rat
2319568LOC100361706lambda-chain C1-region-like118194796681949822Rat
2322069Fam131afamily with sequence similarity 131, member A118021157780221527Rat
2322856Tmem207transmembrane protein 207117425104274270180Rat
2322462LOC100360289hypothetical LOC100360289117506032475216590Rat
2321725LOC100360632bis(5-nucleosyl)-tetraphosphatase-like117979752679798400Rat
2322514LOC100360236hypothetical LOC100360236117456872274569685Rat
2322532LOC100360218interleukin 13 receptor, alpha 1-like117125502371258710Rat
2325461Mir28microRNA 28117597552375975608Rat
2325484Mir1224microRNA 1224118030690280306986Rat
6489863LOC100911962uncharacterized LOC100911962117824763278249722Rat
6484481LOC680329immunoglobulin lambda-like polypeptide 5-like118155468081911935Rat
6499341LOC100910319uncharacterized LOC100910319117581962075823992Rat
7489032Mir6323microRNA 6323118105206581052169Rat
7542563LOC102548576uncharacterized LOC102548576117339851173403897Rat
7542669LOC102554403uncharacterized LOC102554403117064419670656791Rat
7508589LOC102552083uncharacterized LOC102552083117126345071269923Rat
7503836LOC102547727RNA-binding protein EWS-like118099500380997069Rat
7646081LOC102552752uncharacterized LOC102552752117731201777335762Rat
7654032LOC102547398uncharacterized LOC102547398118046153480468553Rat
7640211LOC102550974uncharacterized LOC102550974116926148069271169Rat
7656435LOC102553356uncharacterized LOC102553356117671128176721105Rat
7595638LOC102553680uncharacterized LOC102553680116980454269837672Rat
7642671LOC102554451uncharacterized LOC102554451117569607875714051Rat
7644981LOC102549362uncharacterized LOC102549362117765253077658971Rat
7555728LOC102548792uncharacterized LOC102548792117018599870189950Rat
7568858LOC102553750uncharacterized LOC102553750117659112176596688Rat
7569107LOC102547306uncharacterized LOC102547306117065946470675176Rat
7573197LOC102551589uncharacterized LOC102551589118025909080266788Rat
7546617LOC102550088uncharacterized LOC102550088118005471980078477Rat
7585592LOC102547530uncharacterized LOC102547530117082178270842973Rat
7735872LOC102557186uncharacterized LOC102557186117340667873420224Rat
7750754LOC102549085uncharacterized LOC102549085117006936870115798Rat
7677093LOC102547162uncharacterized LOC102547162116824913268272391Rat
7682905LOC102549772uncharacterized LOC102549772116886436168867008Rat
7732114Eef1akmt4EEF1A lysine methyltransferase 4118029211380299686Rat
7737779LOC102551795uncharacterized LOC102551795118035226380355743Rat
7738503LOC102552590uncharacterized LOC102552590117837728378402994Rat
7741708LOC102551647uncharacterized LOC102551647118032248680342460Rat
9097663LOC103690765extensin-like117060818570608934Rat
9082951LOC103690616uncharacterized LOC103690616117748342577484973Rat
9251123LOC103690608uncharacterized LOC103690608117664822476657835Rat
9338791LOC10369065860S ribosomal protein L15 pseudogene118043419480434834Rat
9432497LOC103690757macrophage-capping protein pseudogene117464701374710453Rat
9415494LOC103693588uncharacterized LOC103693588116797443067979898Rat
10395319LpposLIM domain containing preferred translocation partner in lipoma, opposite strand117642541576426512Rat
11373170LOC108352383uncharacterized LOC108352383117618324776193533Rat
11449348LOC108352384uncharacterized LOC108352384117934144479345742Rat
11433872LOC10835239960S ribosomal protein L26-like 1 pseudogene117196655971967694Rat
11471078LOC108352357uncharacterized LOC108352357117800522178012389Rat
11447782LOC108352398dynein light chain 1, cytoplasmic-like116694882766949432Rat
11427810LOC10835236160S ribosomal protein L21 pseudogene118206510682068274Rat
11453386LOC108352352uncharacterized LOC108352352117088685470910339Rat
11425590LOC108352349uncharacterized LOC108352349116884425868860802Rat
11426389LOC108352376glyceraldehyde-3-phosphate dehydrogenase pseudogene117170032471701564Rat
11407001Trnam-cau3transfer RNA methionine (anticodon CAU) 3117867870078678771Rat
11402614LOC108352385uncharacterized LOC108352385117942761479433062Rat
11382779LOC10835235160S ribosomal protein L17 pseudogene117015399470155281Rat
11507219LOC108352348glyceraldehyde-3-phosphate dehydrogenase pseudogene116885794368859024Rat
11486221LOC108352401uncharacterized LOC108352401118072351080725908Rat
41167741LOC120095776small nucleolar RNA SNORA79116855477768554919Rat
41203638LOC120095698uncharacterized LOC120095698118008421180089447Rat
41248894LOC120095725U7 small nuclear RNA117641296876413034Rat
41281933LOC120095727small nucleolar RNA SNORA63117776800277768126Rat
41139493LOC120095749small nucleolar RNA SNORA17116872013668720265Rat
41323858LOC120095572uncharacterized LOC120095572117362044073629726Rat
41169533LOC120095684uncharacterized LOC120095684117074016670743401Rat
41286369LOC120095685uncharacterized LOC120095685117363323773654430Rat
41287362LOC120095689uncharacterized LOC120095689117683813476853989Rat
41386553LOC120095813U6 spliceosomal RNA118146047781460584Rat
41091877LOC120095680uncharacterized LOC120095680116998141070023987Rat
41116675LOC120095734small nucleolar RNA SNORA13118062492380625057Rat
41118012LOC120095687uncharacterized LOC120095687117661705876630585Rat
41145464LOC120095782small nucleolar RNA SNORD2117776947577769543Rat
41209682LOC120095700uncharacterized LOC120095700118102557781058687Rat
41259569LOC120095781small nucleolar RNA SNORA81117776757977767756Rat
41119419LOC120095551uncharacterized LOC120095551116654691266563094Rat
41260492NEWGENE_6576114transfer RNA threonine (anticodon AGU)118091804980918121Rat
41261524LOC120095676uncharacterized LOC120095676116954411469561971Rat
41329650LOC120095670uncharacterized LOC120095670116858149168588456Rat
41096241LOC120095795U2 spliceosomal RNA116813511468135233Rat
41177202LOC120095570uncharacterized LOC120095570117024327670245083Rat
41178581LOC120095678uncharacterized LOC120095678116975363169759747Rat
41213514LOC120095699uncharacterized LOC120095699118041571780454559Rat
41264294LOC120095674uncharacterized LOC120095674116927084769290769Rat
41123245LOC12009553360S ribosomal protein L10-like117446751274475789Rat
41179830LOC120095554putative 60S ribosomal protein L37a-like protein116689648366897351Rat
41192302LOC120095726small nucleolar RNA SNORA63117776665477766782Rat
41180783LOC120095807U6 spliceosomal RNA116820041468200520Rat
41216067LOC120095733small nucleolar RNA SNORA4117776632577766464Rat
41183084LOC120095792U2 spliceosomal RNA117248655372486710Rat
41269461Ncbp2as2NCBP2 antisense 2 (head to head)116882994768830715Rat
41291360LOC120095574histone H3.3A-like117780108777801454Rat
41372264LOC120095666uncharacterized LOC120095666116751817267522772Rat
41349001LOC120095669uncharacterized LOC120095669116832028568327078Rat
41162418LOC120095818U6 spliceosomal RNA117997194179972044Rat
41107307LOC120095683uncharacterized LOC120095683117035450370358842Rat
41197952LOC120095747small nucleolar RNA SNORA17117749744877497579Rat
41376596LOC120095696SNW domain-containing protein 1-like117974481679745444Rat
41275152LOC120095761small nucleolar RNA SNORA17118148185781481980Rat
41352856LOC120095751U1 spliceosomal RNA118016192980162092Rat
40947157LOC12009557360S ribosomal protein L13a-like117708077777081566Rat
40973363LOC120095772small nucleolar RNA SNORD66118023015280230226Rat
40973835LOC120095688uncharacterized LOC120095688117674451576746777Rat
41339693LOC120095553uncharacterized LOC120095553116635073066366306Rat
41341100LOC120095575olfactory receptor 2L13-like118130916281310272Rat
40926308LOC120095732small nucleolar RNA SNORA36 family116736888067369010Rat
40955254LOC120095534E3 ubiquitin-protein ligase CCNB1IP1-like117780357577804448Rat
40999098LOC120095692uncharacterized LOC120095692117869188878709582Rat
40960446LOC120095677uncharacterized LOC120095677116977949969782866Rat
40962148LOC120095675uncharacterized LOC120095675116946633369470131Rat
40964413LOC120095673uncharacterized LOC120095673116916623369213080Rat
40991205LOC120095682uncharacterized LOC120095682117032832870335873Rat
40940605LOC120095667uncharacterized LOC120095667116810548168114450Rat
40965619LOC120095552uncharacterized LOC120095552116642486366426504Rat
40943335LOC120095770small nucleolar RNA SNORA17118203589182035985Rat
40995627LOC120095681uncharacterized LOC120095681117023491270238937Rat
41024616LOC120095686uncharacterized LOC120095686117406563674081511Rat
41048265LOC120095668uncharacterized LOC120095668116825634668261022Rat
41048357LOC120095690uncharacterized LOC120095690117765910477672704Rat
41315717LOC120095697uncharacterized LOC120095697118003073880054940Rat
41257003LOC120095695uncharacterized LOC120095695117967834779683252Rat
41152260LOC120095783U1 spliceosomal RNA118016823680168390Rat
41335939LOC120095694uncharacterized LOC120095694117936213779377264Rat
41297945LOC1200955355'-AMP-activated protein kinase catalytic subunit alpha-1-like117788807377897420Rat
41336808LOC120095679uncharacterized LOC120095679116993900569958053Rat
41035465LOC120095763small nucleolar RNA SNORA17117591194175912071Rat
41061597LOC120095691uncharacterized LOC120095691117849171778496661Rat
41301821LOC120095571uncharacterized LOC120095571117034029270344905Rat
41235646LOC120095672uncharacterized LOC120095672116889257068895856Rat
41235885LOC120095555uncharacterized LOC120095555117217775072185954Rat
41042846LOC120095579RNA-binding protein EWS-like118099316280996036Rat
41241227LOC120095693small ubiquitin-related modifier 2-like117916345779164088Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
34725D11Mgh3168116642214866422316Ratregion
11291D11Mgh7161117757016877570330Ratregion
11292D11Got72144117757022577570369Ratregion
11343D11Wox2156117695623676956380Ratregion
11344D11Arb1223117695623576956458Ratregion
37096D11Rat92149117410677274106899Ratregion
37942D11Rat46178117885132978851519Ratregion
34912D11Rat30167117449920974499378Ratregion
35094D11Rat2145116752590367526048Ratregion
35953D11Rat37164117211751372117673Ratregion
38284D11Rat47211117063319470633407Ratregion
38382D11Rat45224118118429181184507Ratregion
40380D11Rat62173116771505867715230Ratregion
40550D11Rat60171117161796871618130Ratregion
40678D11Rat59213117130873871308949Ratregion
38672D11Rat51239117026245170262681Ratregion
40048D11Rat58164117687881276878990Ratregion
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38964D11Rat42102117688121076881304Ratregion
39084D11Rat93240116611332166113562Ratregion
41952D11Arb2199117747324577473444Ratregion
41954D11Arb4236116642214166422377Ratregion
41256D11Rat61165116944607069446234Ratregion
41482D11Rat57170117420421074204382Ratregion
42954D11Rat115173116861141968611592Ratregion
42955D11Rat106132116834015468340286Ratregion
42956D11Rat105205117113489671135104Ratregion
42957D11Rat104237117429126074291612Ratregion
42958D11Rat103225117937185779372066Ratregion
42959D11Rat90207117973014479730349Ratregion
42376D11Rat117115117648357876483653Ratregion
40870D11Rat55231117946973379469960Ratregion
40938D11Rat56195117571807775718276Ratregion
41692D11Rat89219118216900182169223Ratregion
41756D11Rat91234118097033780970606Ratregion
60568D7Got152172116786709467867266Ratregion
44847D11Got73300117885134078851641Ratregion
44849D11Got78198117873113978731336Ratregion
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44855D11Got66169117444867174448840Ratregion
44857D11Got62162117211205372112215Ratregion
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44862D11Got53112116641439566414504Ratregion
44864D11Got54166116710827267108435Ratregion
44876D11Got58203116786711267867315Ratregion
629586D11Mit11221116750729367507514Ratregion
59998D11Got61149117208094572081090Ratregion
59999D11Got65117117471376974713884Ratregion
60000D11Got67118117449688874497006Ratregion
60001D11Got6988117591732075917412Ratregion
60002D11Got71170117684175576841925Ratregion
60003D11Got74359117838573978386094Ratregion
60004D11Got75210117826250378262713Ratregion
60005D11Got7994118003914180039232Ratregion
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66624D11Mco1240117237393272374168Ratregion
67350D11Arb13183117245397172454154Ratregion
1630206D11Wox15117483978074839933Ratregion
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1628497D11Uwm1174118062455880624732Ratregion
1636528D2Got332131117651632676516356Ratregion
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1634138D11Cebr1265117842454578424810Ratregion
1634385D11Wox16236118020845080208686Ratregion
2325914D6Hmgc2188117623806776238098Ratregion
7206710UniSTS:4804741173118028968480290857Ratregion
7205898UniSTS:4856331148118028970880290856Ratregion
7193135Ephb3179117984124279841421Ratregion
7192369Ephb31434117984976679851200Ratregion
5035733STS-L28957186116831723268317418Ratregion
7206438Cldn11090117443540074436490Ratregion
5035859PMC24644P1786117695715076957936Ratregion
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5039000RH127455193117752706577527258Ratregion
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5026100RH130910201117805462178054822Ratregion
5028579AA959454242117578732775787569Ratregion
5028581AI480666219116727764767277866Ratregion
7206152UniSTS:532277491118036780880368299Ratregion
5031486AU048165253117781902377819275Ratregion
5034071RH141250180118013447080134650Ratregion
5034077RH141276150116700779967007949Ratregion
5031544AU047979278117685607876856356Ratregion
5026396RH132045193116933815769338350Ratregion
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5034390RH118405153118030575380305906Ratregion
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5026808RH133611150117972528779725437Ratregion
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5029439Muc40116800863368009770Ratregion
5027077RH70256194117984074079840934Ratregion
5032477RH126681213117879516678795379Ratregion
5035334AW529860192117208500272085194Ratregion
5035370BQ190983192116888541168885603Ratregion
5035380BE115254164118209172882091892Ratregion
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5035190AW528025186118039529280395595Ratregion
5035202AW535442151117897410778974258Ratregion
5035228BM390883154118066368080663834Ratregion
5027501X5146895117695803876958134Ratregion
5027503AF037260116116811493968115055Ratregion
5030099BE110286151116727967967279830Ratregion
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5028077U4146586117687636376876449Ratregion
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5028179D16Mit101157117710697677107133Ratregion
5028187D16Mit229105116948368369483788Ratregion
5033627RH139519199116765572467655924Ratregion
5025616RH129005211117738553777385748Ratregion
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5030955BF399765192116913981769140009Ratregion
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5025800RH129723220117752691377527133Ratregion
5051917RH94733144117857675978576903Ratregion
5055047RH143575257116680233666802593Ratregion
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5054059RH143007164117339870173398865Ratregion
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5052163RH94876259117695750776957766Ratregion
5055459RH143813175118073462380734798Ratregion
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5054627RH143333183116933732869337511Ratregion
5059456AW530915165116894621368946378Ratregion
5059456AW530915165116894621368946378Ratregion
5054785RH143424108118021801280218120Ratregion
5057894BI277248166118024850080248666Ratregion
5058540AI555746203118056696880567171Ratregion
5058572BI290823177117578948475789661Ratregion
5058624AA899041180116965385369654033Ratregion
5055857RH144042183116864586268646045Ratregion
5055453RH143810265118050603180506296Ratregion
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5057786BI277102184117333291873333102Ratregion
5050664RH134187202117122643971227134Ratregion
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5050270RH133960184116727921067279394Ratregion
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5054211RH143094142118021220380212345Ratregion
5051655AW554757134117898316878983302Ratregion
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5044360RH130558219117824787978248098Ratregion
5045434RH131176203116704776267047965Ratregion
5047452RH132336216116964864669648862Ratregion
5046114RH131566187116728108267281269Ratregion
5045822RH131398184118122160381221787Ratregion
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5048034RH132670206117939570979395915Ratregion
5048092RH132703195118074337580743570Ratregion
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5048210RH132771213117135966671359879Ratregion
5048260RH132800186116839131168391499Ratregion
5049660RH133608209117611264376112852Ratregion
5041962RH129159215118019370880193923Ratregion
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5042162RH129276206116881926268819468Ratregion
5047310RH132254186117940225179402437Ratregion
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5042542RH129497217117909035679090573Ratregion
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5040462RH128297183116831398968314172Ratregion
5039896RH127970186118036554780365733Ratregion
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5041058RH128639194118074204880742242Ratregion
5071946RH135376200117888801078888210Ratregion
5072126RH136666203117866444678664649Ratregion
5074072RH137804129117202536972025498Ratregion
5075310RH138521153117635083576350988Ratregion
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5072640RH136967185116848689968487084Ratregion
5076700RH139328125116788011367880238Ratregion
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5075468RH138611182116785103067851212Ratregion
5074888RH138276134116896135268961486Ratregion
5074914RH138291154116669806466698218Ratregion
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5080006RH141328180116785340567853585Ratregion
5078122RH140156201117256254772562748Ratregion
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5080362RH141535191116800127168001462Ratregion
5070902RH134772208118114138581141593Ratregion
5080534RH141635205116784116167841366Ratregion
5078750RH140530159117256250572562664Ratregion
5078876RH140603189116928110069281289Ratregion
5073568RH137511187117815187378152060Ratregion
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5070742RH134678201117939391579394116Ratregion
5074634RH138129128117406303874063166Ratregion
5061776AI715998132118213903182139163Ratregion
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5065036BE108960197116835541468355611Ratregion
5066784AU048153192117637727476377466Ratregion
5067202AU047899177117816282478163001Ratregion
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5067592AU047653186117570973075709916Ratregion
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5060040BF388375121117599367575993796Ratregion
5065136AI044813203116681104666811249Ratregion
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5060958AA874911196118035558380355779Ratregion
5062640BF40363895117091009670910191Ratregion
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5060254BG378170179117907616879076347Ratregion
5063828AW535588167116965185369652022Ratregion
5065202BE121163157117921844179218598Ratregion
5062196BE106303201118215382182154022Ratregion
5062356BI288724201116876926568769466Ratregion
5062404BF397888151117241392372414074Ratregion
5065548BE109290155116895357068953725Ratregion
5062720AI71656491118039467280394763Ratregion
5061046AI112486214116867788468678098Ratregion
5061062BG379202160117219148572191645Ratregion
5061096AW532277150118017065880170808Ratregion
5064498BI296803173116953814669538319Ratregion
5064576BF399377165117943114279431307Ratregion
5066232PMC123023P2187117695780176957988Ratregion
5063136BI295978183117758173577581918Ratregion
5064672BF399547104117841043478410538Ratregion
5066294PMC139890P1132117776665177766783Ratregion
5064858BE108645150116788372467883874Ratregion
5061654BF396995212116658421666584428Ratregion
5086289AI535225202117443514174435343Ratregion
5086355AA850138185118194598481946169Ratregion
5086355AA850138185118191157681911761Ratregion
5087422Ephb3695117984072579841420Ratregion
5086417AA965213202117044095770441159Ratregion
5086447BM385725192116718517267185364Ratregion
5087838Eif4a2188117776652777766952Ratregion
5087922Hira157118213247082132627Ratregion
5089163AU048993275117585389775854172Ratregion
5089961AU049467185117785623477856419Ratregion
5088151UniSTS:144823780116728305967283839Ratregion
5089255AU049047209116895973468959945Ratregion
5089365AU049112256117178172871781984Ratregion
5090861AU050010167116710826767108434Ratregion
5083747AI599402207117812150878121715Ratregion
5083883AI010659172117333249873332670Ratregion
5088811AU048786249116849045368490702Ratregion
5090435AU049748216117723367177233887Ratregion
5090635AU049871121117873121678731337Ratregion
5081517BE117128163117888628178886444Ratregion
5081703BF40829795117892842978928524Ratregion
5084416AI17673696117772202877722124Ratregion
5084482AA850488149117384689073847039Ratregion
5081869BI273900216118036460580364821Ratregion
5081967BE118936168116880839568808563Ratregion
5081989BE118996191118021429180214482Ratregion
5085513AI045433118116787869467878812Ratregion
5090253AU049641295117493039674930693Ratregion
5088973AU048879277116819096068191237Ratregion
5089203AU049016241116673992466740015Ratregion
5089203AU049016241116673977466740015Ratregion
5082667BE119962154116876766868767822Ratregion
5084522AI169712180116930280969302989Ratregion
5082989BF390582151116623882966238980Ratregion
5083175BF390931198118034009780340295Ratregion
5085629BM383343199117097463470974833Ratregion
5086789BE114628168117021771270217880Ratregion
5081925BE118763178116944329869443476Ratregion
5084044AI40823894117820537078205464Ratregion
5502589RH12546195117815197378152068Ratregion
5507557D18S1297114118216748082168493Ratregion
5507652AA4759090116683054666831914Ratregion
5507707SST-112F84117695713176957836Ratregion
5503933UniSTS:256695853117695697476957827Ratregion
5506469G35720169117856980678569975Ratregion
5507125UniSTS:224674192116695801566958207Ratregion
5500272D22S1095E102118202458182024683Ratregion
5500298D20S100580117776452777764607Ratregion
5502553RH125315189116867868368678872Ratregion
5503246UniSTS:237474226117776898477769210Ratregion
5503248UniSTS:237479202117048400870484210Ratregion
5504183UniSTS:259614377117070651770707894Ratregion
5504508PMC25851P285117486563574865720Ratregion
5501681Hes1401117070583470706235Ratregion
5505390Ewsr10118099472480995517Ratregion
5502981Ccnb1ip1500117780377777804277Ratregion
Position Markers

Flank 1: (D11Rat93)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21166,113,321 - 66,113,562 (+)MAPPER
Rnor_6.01169,342,319 - 69,342,559NCBI
Rnor_5.01172,432,813 - 72,433,053UniSTS
RGSC_v3.41167,930,910 - 67,931,151RGD
RGSC_v3.41167,930,911 - 67,931,151UniSTS
RGSC_v3.11167,988,499 - 67,988,740RGD
Celera1165,567,691 - 65,567,931UniSTS
SHRSP x BN Map1129.8399UniSTS
SHRSP x BN Map1129.8399RGD
FHH x ACI Map1148.5199RGD
Cytogenetic Map11q22UniSTS
Peak: (D11Rat46)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21178,851,329 - 78,851,519 (+)MAPPER
Rnor_6.01182,442,929 - 82,443,118NCBI
Rnor_5.01185,534,123 - 85,534,312UniSTS
RGSC_v3.41181,091,341 - 81,091,531RGD
RGSC_v3.41181,091,342 - 81,091,531UniSTS
RGSC_v3.11181,148,931 - 81,149,120RGD
Celera1177,714,115 - 77,714,304UniSTS
RH 3.4 Map11650.2UniSTS
RH 3.4 Map11650.2RGD
RH 2.0 Map1160.2RGD
SHRSP x BN Map1135.7599RGD
FHH x ACI Map1156.1999RGD
Flank 2: (D11Rat89)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21182,169,001 - 82,169,223 (+)MAPPER
Rnor_6.01186,312,220 - 86,312,439NCBI
Rnor_5.01189,414,186 - 89,414,405UniSTS
Celera1180,949,492 - 80,949,711UniSTS
SHRSP x BN Map1138.2699UniSTS
SHRSP x BN Map1138.2699RGD
FHH x ACI Map1157.2499RGD
Cytogenetic Map11p12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)113123913478851519Rat
70180BpQTLcluster10Blood pressure QTL cluster 103.19arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)113491804179918041Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)114094618882566702Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)114428575982566702Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
4889859Pur28Proteinuria QTL 2819.50.001total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)114545932375190161Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)115445753486241447Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)115513672982993457Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)115635142486241447Rat
631506Bp104Blood pressure QTL 1042.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)115980279482566545Rat
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)115980279482566553Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)116034659086241447Rat
1549848Bvd6Brain ventricular dilatation QTL 63.10.0001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)116611332182169223Rat
634339Niddm50Non-insulin dependent diabetes mellitus QTL 503.32blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)116642214886241447Rat
1354593Stl12Serum triglyceride level QTL 123.36blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)116642214886241447Rat
1354656Bvd3Brain ventricular dilatation QTL 33.640.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)116944607082846715Rat
10450831Scl80Serum cholesterol level QTL 804.70.01blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)117695713183051965Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_statistics_details MAPMAKER/QTL (version1.1b) was used for LOD score calculations and composite interval mapping; MAPMAKER/EXP(version 3.0b) was used for interval mapping 68196