Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | congenital disorder of glycosylation Id | | ISO | ALG3 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | congenital disorder of glycosylation Id | | ISO | ALG3 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | Rat ISS GO annotations from GOA human gene data--August 2006 | GOA data from the GO Consortium |
3. | Rat ISS GO annotations from MGI mouse gene data--August 2006 | MGD data from the GO Consortium |
4. | OMIM Disease Annotation Pipeline | OMIM Disease Annotation Pipeline |
5. | KEGG Annotation Import Pipeline | Pipeline to import KEGG annotations from KEGG into RGD |
6. | GOA pipeline | RGD automated data pipeline |
7. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
8. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
9. | Comprehensive gene review and curation | RGD comprehensive gene curation |
Alg3 (Rattus norvegicus - Norway rat) |
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ALG3 (Homo sapiens - human) |
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Alg3 (Mus musculus - house mouse) |
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Alg3 (Chinchilla lanigera - long-tailed chinchilla) |
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ALG3 (Pan paniscus - bonobo/pygmy chimpanzee) |
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ALG3 (Canis lupus familiaris - dog) |
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Alg3 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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ALG3 (Sus scrofa - pig) |
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ALG3 (Chlorocebus sabaeus - green monkey) |
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Alg3 (Heterocephalus glaber - naked mole-rat) |
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Variants in Alg3
14 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
RH118405 |
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RH130739 |
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RH141397 |
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alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 3 | 35 | 38 | 33 | 8 | 33 | 3 | 66 | 27 | 36 | 5 | ||
Low | 8 | 19 | 8 | 11 | 8 | 8 | 8 | 8 | 8 | 5 | 6 | 8 | |
Below cutoff |
RefSeq Transcripts | NM_001142363 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
NR_024535 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006248558 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017597909 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063270330 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063270331 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063270332 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063270333 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063270334 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063270335 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AC110855 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
BC088475 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CO401508 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FM075565 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000011 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000002331 ⟹ ENSRNOP00000002331 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000073703 ⟹ ENSRNOP00000065358 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000119074 ⟹ ENSRNOP00000095000 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001142363 ⟹ NP_001135835 | ||||||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NR_024535 | ||||||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||||||
Type: | NON-CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006248558 ⟹ XP_006248620 | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_063270330 ⟹ XP_063126400 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063270331 ⟹ XP_063126401 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063270332 ⟹ XP_063126402 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063270333 ⟹ XP_063126403 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063270334 ⟹ XP_063126404 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063270335 ⟹ XP_063126405 | ||||||||
Type: | CODING | ||||||||
Position: |
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Protein RefSeqs | NP_001135835 | (Get FASTA) | NCBI Sequence Viewer |
XP_006248620 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063126400 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063126401 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063126402 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063126403 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063126404 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063126405 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAH88475 | (Get FASTA) | NCBI Sequence Viewer |
Ensembl Protein | ENSRNOP00000002331.7 | ||
ENSRNOP00000065358 | |||
ENSRNOP00000065358.2 | |||
ENSRNOP00000095000.1 |
RefSeq Acc Id: | NP_001135835 ⟸ NM_001142363 |
- UniProtKB: | A6JSA4 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006248620 ⟸ XM_006248558 |
- Peptide Label: | isoform X2 |
- UniProtKB: | M0R7D2 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000002331 ⟸ ENSRNOT00000002331 |
RefSeq Acc Id: | ENSRNOP00000065358 ⟸ ENSRNOT00000073703 |
RefSeq Acc Id: | ENSRNOP00000095000 ⟸ ENSRNOT00000119074 |
RefSeq Acc Id: | XP_063126402 ⟸ XM_063270332 |
- Peptide Label: | isoform X4 |
RefSeq Acc Id: | XP_063126403 ⟸ XM_063270333 |
- Peptide Label: | isoform X5 |
RefSeq Acc Id: | XP_063126400 ⟸ XM_063270330 |
- Peptide Label: | isoform X1 |
RefSeq Acc Id: | XP_063126401 ⟸ XM_063270331 |
- Peptide Label: | isoform X3 |
RefSeq Acc Id: | XP_063126404 ⟸ XM_063270334 |
- Peptide Label: | isoform X6 |
RefSeq Acc Id: | XP_063126405 ⟸ XM_063270335 |
- Peptide Label: | isoform X7 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-F1M8K7-F1-model_v2 | AlphaFold | F1M8K7 | 1-438 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13698276 | ||||||||
Promoter ID: | EPDNEW_R8801 | ||||||||
Type: | multiple initiation site | ||||||||
Name: | Alg3_1 | ||||||||
Description: | ALG3, alpha-1,3- mannosyltransferase | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | RGD:1306004 | AgrOrtholog |
BioCyc Gene | G2FUF-20741 | BioCyc |
BioCyc Pathway | MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS [protein N-glycosylation initial phase (eukaryotic)] | BioCyc |
BioCyc Pathway Image | MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS | BioCyc |
Ensembl Genes | ENSRNOG00000001712 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000002331 | ENTREZGENE |
ENSRNOT00000002331.9 | UniProtKB/TrEMBL | |
ENSRNOT00000073703 | ENTREZGENE | |
ENSRNOT00000073703.2 | UniProtKB/TrEMBL | |
ENSRNOT00000119074.1 | UniProtKB/TrEMBL | |
IMAGE_CLONE | IMAGE:7129249 | IMAGE-MGC_LOAD |
InterPro | Glycosyltransferase_ALG3 | UniProtKB/TrEMBL |
KEGG Report | rno:287983 | UniProtKB/TrEMBL |
MGC_CLONE | MGC:95144 | IMAGE-MGC_LOAD |
NCBI Gene | 287983 | ENTREZGENE |
PANTHER | ALG3 | UniProtKB/TrEMBL |
DOL-P-MAN:MAN(5)GLCNAC(2)-PP-DOL ALPHA-1,3-MANNOSYLTRANSFERASE | UniProtKB/TrEMBL | |
Pfam | ALG3 | UniProtKB/TrEMBL |
PhenoGen | Alg3 | PhenoGen |
RatGTEx | ENSRNOG00000001712 | RatGTEx |
UniProt | A0A8I6GKZ1_RAT | UniProtKB/TrEMBL |
A6JSA4 | ENTREZGENE, UniProtKB/TrEMBL | |
F1M8K7_RAT | UniProtKB/TrEMBL | |
M0R7D2 | ENTREZGENE, UniProtKB/TrEMBL | |
Q5M7T0_RAT | UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2013-02-27 | Alg3 | ALG3, alpha-1,3- mannosyltransferase | Alg3 | asparagine-linked glycosylation 3, alpha-1,3- mannosyltransferase homolog (S. cerevisiae) | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2009-02-04 | Alg3 | asparagine-linked glycosylation 3, alpha-1,3- mannosyltransferase homolog (S. cerevisiae) | Alg3 | asparagine-linked glycosylation 3 homolog (S. cerevisiae, alpha-1,3-mannosyltransferase) | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2008-09-26 | Alg3 | asparagine-linked glycosylation 3 homolog (S. cerevisiae, alpha-1,3-mannosyltransferase) | Alg3 | asparagine-linked glycosylation 3 homolog (yeast, alpha-1,3-mannosyltransferase) | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2005-12-06 | Alg3 | asparagine-linked glycosylation 3 homolog (yeast, alpha-1,3-mannosyltransferase) | Alg3_predicted | asparagine-linked glycosylation 3 homolog (yeast, alpha-1,3-mannosyltransferase) (predicted) | Symbol and Name updated | 1559027 | APPROVED |
2005-01-12 | Alg3_predicted | asparagine-linked glycosylation 3 homolog (yeast, alpha-1,3-mannosyltransferase) (predicted) | Symbol and Name status set to approved | 70820 | APPROVED |