Gnb1l (G protein subunit beta 1 like) - Rat Genome Database

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Gene: Gnb1l (G protein subunit beta 1 like) Rattus norvegicus
Analyze
Symbol: Gnb1l
Name: G protein subunit beta 1 like
RGD ID: 1594165
Description: Predicted to be involved in social behavior. Predicted to localize to cytoplasm. Orthologous to human GNB1L (G protein subunit beta 1 like); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; cobalt dichloride.
Type: protein-coding
RefSeq Status: MODEL
Also known as: guanine nucleotide binding protein (G protein), beta polypeptide 1-like; guanine nucleotide-binding protein subunit beta-like protein 1; LOC680266; similar to Guanine nucleotide-binding protein beta subunit-like protein 1 (G protein beta subunit-like protein 1) (WD40 repeat-containing protein deleted in VCFS) (WDVCF protein)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21182,425,301 - 82,507,836 (-)NCBI
Rnor_6.0 Ensembl1186,577,339 - 86,655,602 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01186,575,229 - 86,655,614 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01189,675,000 - 89,751,589 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41184,427,112 - 84,489,259 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1181,207,933 - 81,284,763 (-)NCBICelera
Cytogenetic Map11q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:16684884   PMID:18775783  


Genomics

Comparative Map Data
Gnb1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21182,425,301 - 82,507,836 (-)NCBI
Rnor_6.0 Ensembl1186,577,339 - 86,655,602 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01186,575,229 - 86,655,614 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01189,675,000 - 89,751,589 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41184,427,112 - 84,489,259 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1181,207,933 - 81,284,763 (-)NCBICelera
Cytogenetic Map11q23NCBI
GNB1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2219,783,223 - 19,854,939 (-)EnsemblGRCh38hg38GRCh38
GRCh382219,783,223 - 19,854,874 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372219,770,746 - 19,842,397 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362218,155,934 - 18,222,462 (-)NCBINCBI36hg18NCBI36
Build 342218,150,493 - 18,217,016NCBI
Celera223,628,001 - 3,694,531 (-)NCBI
Cytogenetic Map22q11.21NCBI
HuRef223,395,439 - 3,461,970 (-)NCBIHuRef
CHM1_12219,775,641 - 19,842,170 (-)NCBICHM1_1
Gnb1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391618,316,029 - 18,385,430 (+)NCBIGRCm39mm39
GRCm39 Ensembl1618,317,463 - 18,385,429 (+)Ensembl
GRCm381618,497,386 - 18,566,680 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1618,498,713 - 18,566,679 (+)EnsemblGRCm38mm10GRCm38
MGSCv371618,498,861 - 18,566,772 (+)NCBIGRCm37mm9NCBIm37
MGSCv361618,412,451 - 18,480,242 (+)NCBImm8
Celera1619,073,334 - 19,140,949 (+)NCBICelera
Cytogenetic Map16A3NCBI
cM Map1611.46NCBI
Gnb1l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495544218,224,081 - 18,281,558 (+)NCBIChiLan1.0ChiLan1.0
GNB1L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12218,222,195 - 18,289,580 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2218,222,195 - 18,289,580 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0222,542,925 - 2,616,201 (-)NCBIMhudiblu_PPA_v0panPan3
GNB1L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12629,454,954 - 29,511,019 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2629,454,054 - 29,510,792 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2629,409,099 - 29,468,597 (+)NCBI
ROS_Cfam_1.02630,854,602 - 30,913,902 (+)NCBI
UMICH_Zoey_3.12628,902,503 - 28,961,823 (+)NCBI
UNSW_CanFamBas_1.02628,531,032 - 28,587,259 (+)NCBI
UU_Cfam_GSD_1.02629,613,402 - 29,672,707 (+)NCBI
Gnb1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118138,992,841 - 139,061,881 (+)NCBI
SpeTri2.0NW_0049366193,691,327 - 3,760,906 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GNB1L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1451,305,005 - 51,343,029 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11451,306,561 - 51,343,040 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21454,943,213 - 54,979,683 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GNB1L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1195,889,395 - 5,959,515 (+)NCBI
ChlSab1.1 Ensembl195,890,567 - 5,959,510 (+)Ensembl
Vero_WHO_p1.0NW_023666085969,817 - 1,040,143 (-)NCBI
Gnb1l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624747418,912 - 489,057 (-)NCBI

Position Markers
D11Rat1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21182,450,825 - 82,450,994 (+)MAPPER
Rnor_6.01186,593,428 - 86,593,596NCBIRnor6.0
Rnor_5.01189,693,199 - 89,693,367UniSTSRnor5.0
RGSC_v3.41184,443,164 - 84,443,333RGDRGSC3.4
RGSC_v3.41184,443,165 - 84,443,333UniSTSRGSC3.4
RGSC_v3.11184,483,762 - 84,483,930RGD
Celera1181,226,132 - 81,226,300UniSTS
RH 3.4 Map11703.5UniSTS
RH 3.4 Map11703.5RGD
SHRSP x BN Map1138.2299UniSTS
SHRSP x BN Map1138.2299RGD
Cytogenetic Map11q23UniSTS
RH142985  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21182,503,449 - 82,503,643 (+)MAPPER
Rnor_6.01186,651,450 - 86,651,643NCBIRnor6.0
Rnor_5.01189,745,902 - 89,746,095UniSTSRnor5.0
RGSC_v3.41184,496,817 - 84,497,010UniSTSRGSC3.4
Celera1181,280,599 - 81,280,792UniSTS
RH 3.4 Map11701.4UniSTS
Cytogenetic Map11q23UniSTS
RH134799  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01189,744,175 - 89,744,362NCBIRnor5.0
Rnor_5.01653,583,176 - 53,583,363NCBIRnor5.0
RGSC_v3.41654,126,705 - 54,126,891UniSTSRGSC3.4
RGSC_v3.41184,495,091 - 84,495,277UniSTSRGSC3.4
Celera1648,719,839 - 48,720,025UniSTS
Celera1181,278,873 - 81,279,059UniSTS
Cytogenetic Map11q23UniSTS
RH137136  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21182,434,780 - 82,434,961 (+)MAPPER
Rnor_6.01186,577,383 - 86,577,563NCBIRnor6.0
Rnor_5.01189,677,154 - 89,677,334UniSTSRnor5.0
RGSC_v3.41184,427,120 - 84,427,300UniSTSRGSC3.4
Celera1181,210,087 - 81,210,267UniSTS
RH 3.4 Map11700.2UniSTS
Cytogenetic Map11q23UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111901627290463843Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112831466586994795Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)113043533986714631Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)114309033886714631Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)114658320986714631Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114726402386994547Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114726402386994547Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)115785881090463843Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)115994302390463843Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)116010984287141948Rat
631506Bp104Blood pressure QTL 1042.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)116265336586714475Rat
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)116265336586714483Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)116449467190463843Rat
1354593Stl12Serum triglyceride level QTL 123.36blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)116964970890463843Rat
1354656Bvd3Brain ventricular dilatation QTL 33.640.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)117272002986994795Rat
10450831Scl80Serum cholesterol level QTL 804.70.01blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)118035840887200449Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:225
Count of miRNA genes:130
Interacting mature miRNAs:142
Transcripts:ENSRNOT00000002596, ENSRNOT00000066150, ENSRNOT00000073377
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 6 8
Low 3 43 57 41 19 41 8 11 72 29 33 11 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000002596   ⟹   ENSRNOP00000002596
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1186,577,339 - 86,655,482 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000073377   ⟹   ENSRNOP00000064268
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1186,577,377 - 86,655,602 (-)Ensembl
RefSeq Acc Id: XM_006221215   ⟹   XP_006221277
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1181,207,933 - 81,284,762 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006221219   ⟹   XP_006221281
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1181,207,933 - 81,284,763 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006248650   ⟹   XP_006248712
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21182,432,627 - 82,507,833 (-)NCBI
Rnor_6.01186,575,229 - 86,655,613 (-)NCBI
Rnor_5.01189,675,000 - 89,751,589 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006248654   ⟹   XP_006248716
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21182,432,627 - 82,507,836 (-)NCBI
Rnor_6.01186,575,229 - 86,655,614 (-)NCBI
Rnor_5.01189,675,000 - 89,751,589 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598200   ⟹   XP_017453689
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21182,432,627 - 82,458,918 (-)NCBI
Rnor_6.01186,575,229 - 86,601,482 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017604384   ⟹   XP_017459873
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1181,207,933 - 81,234,186 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039088981   ⟹   XP_038944909
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21182,432,627 - 82,490,569 (-)NCBI
RefSeq Acc Id: XM_039088982   ⟹   XP_038944910
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21182,432,627 - 82,457,422 (-)NCBI
RefSeq Acc Id: XM_039088983   ⟹   XP_038944911
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21182,432,627 - 82,455,750 (-)NCBI
RefSeq Acc Id: XR_005491494
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21182,425,301 - 82,507,833 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_006221281   ⟸   XM_006221219
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006221277   ⟸   XM_006221215
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006248716   ⟸   XM_006248654
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006248712   ⟸   XM_006248650
- Peptide Label: isoform X1
- UniProtKB: D4A2F0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017459873   ⟸   XM_017604384
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017453689   ⟸   XM_017598200
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000002596   ⟸   ENSRNOT00000002596
RefSeq Acc Id: ENSRNOP00000064268   ⟸   ENSRNOT00000073377
RefSeq Acc Id: XP_038944909   ⟸   XM_039088981
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038944910   ⟸   XM_039088982
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038944911   ⟸   XM_039088983
- Peptide Label: isoform X5
Protein Domains
WD_REPEATS_REGION

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698305
Promoter ID:EPDNEW_R8826
Type:multiple initiation site
Name:Gnb1l_1
Description:G protein subunit beta 1 like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01186,655,583 - 86,655,643EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1594165 AgrOrtholog
Ensembl Genes ENSRNOG00000001891 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000002596 UniProtKB/TrEMBL
  ENSRNOP00000064268 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000002596 UniProtKB/TrEMBL
  ENSRNOT00000073377 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro WD40/YVTN_repeat-like_dom UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
  WD40_repeat_dom UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
KEGG Report rno:680266 UniProtKB/TrEMBL
NCBI Gene 680266 ENTREZGENE
Pfam WD40 UniProtKB/TrEMBL
PhenoGen Gnb1l PhenoGen
PROSITE WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP WD40_like UniProtKB/TrEMBL
UniProt D4A2F0 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary M0R4I1 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-15 Gnb1l  G protein subunit beta 1 like  Gnb1l  guanine nucleotide binding protein (G protein), beta polypeptide 1-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-07-08 Gnb1l  guanine nucleotide binding protein (G protein), beta polypeptide 1-like  LOC682392  similar to Guanine nucleotide-binding protein beta subunit-like protein 1 (G protein beta subunit-like protein 1) (WD40 repeat-containing protein deleted in VCFS) (WDVCF protein)  Data Merged 1643240 APPROVED
2008-03-05 Gnb1l  guanine nucleotide binding protein (G protein), beta polypeptide 1-like  LOC680266  similar to Guanine nucleotide-binding protein beta subunit-like protein 1 (G protein beta subunit-like protein 1) (WD40 repeat-containing protein deleted in VCFS) (WDVCF protein)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC680266  similar to Guanine nucleotide-binding protein beta subunit-like protein 1 (G protein beta subunit-like protein 1) (WD40 repeat-containing protein deleted in VCFS) (WDVCF protein)      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC682392  similar to Guanine nucleotide-binding protein beta subunit-like protein 1 (G protein beta subunit-like protein 1) (WD40 repeat-containing protein deleted in VCFS) (WDVCF protein)      Symbol and Name status set to provisional 70820 PROVISIONAL