Tango2 (transport and golgi organization 2 homolog) - Rat Genome Database

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Gene: Tango2 (transport and golgi organization 2 homolog) Rattus norvegicus
Analyze
Symbol: Tango2
Name: transport and golgi organization 2 homolog
RGD ID: 1310348
Description: Predicted to be involved in Golgi organization and protein secretion. Predicted to be located in cytosol and mitochondrion. Predicted to be active in Golgi apparatus. Orthologous to human TANGO2 (transport and golgi organization 2 homolog); INTERACTS WITH 6-propyl-2-thiouracil; acrylamide; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical protein LOC360738; LOC360738; RGD1310348; similar to Ser/Thr-rich protein T10 in DGCR region; transport and golgi organization 2 homolog (Drosophila); transport and Golgi organization protein 2 homolog; uncharacterized protein LOC360738
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21182,645,978 - 82,692,574 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1182,645,974 - 82,692,574 (+)Ensembl
Rnor_6.01186,793,959 - 86,840,556 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1186,797,557 - 86,840,573 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01189,887,900 - 89,934,494 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41184,643,644 - 84,686,639 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11184,702,391 - 84,727,234 (+)NCBI
Celera1181,426,587 - 81,469,582 (+)NCBICelera
Cytogenetic Map11q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)
cytosol  (ISO)
Golgi apparatus  (IBA,ISO)
mitochondrion  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:18775783   PMID:26805781  


Genomics

Comparative Map Data
Tango2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21182,645,978 - 82,692,574 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1182,645,974 - 82,692,574 (+)Ensembl
Rnor_6.01186,793,959 - 86,840,556 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1186,797,557 - 86,840,573 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01189,887,900 - 89,934,494 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41184,643,644 - 84,686,639 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11184,702,391 - 84,727,234 (+)NCBI
Celera1181,426,587 - 81,469,582 (+)NCBICelera
Cytogenetic Map11q23NCBI
TANGO2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382220,017,023 - 20,067,164 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2220,017,014 - 20,067,164 (+)EnsemblGRCh38hg38GRCh38
GRCh372220,004,546 - 20,054,687 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362218,388,631 - 18,433,447 (+)NCBINCBI36hg18NCBI36
Celera223,859,834 - 3,904,651 (+)NCBI
Cytogenetic Map22q11.21NCBI
HuRef223,629,293 - 3,673,868 (+)NCBIHuRef
CHM1_12220,008,340 - 20,053,153 (+)NCBICHM1_1
T2T-CHM13v2.02220,394,641 - 20,444,782 (+)NCBI
Tango2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Build 341157,072,134 - 157,126,528NCBI
GRCm391618,118,689 - 18,165,962 (-)NCBIGRCm39mm39
GRCm39 Ensembl1618,118,689 - 18,165,967 (-)Ensembl
GRCm381618,300,825 - 18,348,098 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1618,300,825 - 18,348,103 (-)EnsemblGRCm38mm10GRCm38
MGSCv371618,300,918 - 18,344,025 (-)NCBIGRCm37mm9NCBIm37
MGSCv361618,214,388 - 18,238,008 (-)NCBImm8
Celera1618,873,570 - 18,916,677 (-)NCBICelera
Cytogenetic Map16A3NCBI
cM Map1611.34NCBI
Tango2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544218,036,477 - 18,074,213 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544218,036,477 - 18,074,036 (-)NCBIChiLan1.0ChiLan1.0
TANGO2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12218,449,381 - 18,497,886 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2218,449,387 - 18,497,886 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0222,779,217 - 2,826,445 (+)NCBIMhudiblu_PPA_v0panPan3
TANGO2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12629,265,489 - 29,303,814 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2629,266,256 - 29,304,164 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2629,224,376 - 29,262,736 (-)NCBI
ROS_Cfam_1.02630,669,587 - 30,707,941 (-)NCBI
ROS_Cfam_1.0 Ensembl2630,669,585 - 30,707,909 (-)Ensembl
UMICH_Zoey_3.12628,717,451 - 28,755,795 (-)NCBI
UNSW_CanFamBas_1.02628,342,814 - 28,381,158 (-)NCBI
UU_Cfam_GSD_1.02629,427,808 - 29,466,174 (-)NCBI
Tango2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118138,780,367 - 138,819,275 (-)NCBI
SpeTri2.0NW_0049366193,934,791 - 3,973,695 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TANGO2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1451,443,638 - 51,464,367 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11451,443,597 - 51,464,370 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21455,080,233 - 55,100,997 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TANGO2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1195,672,758 - 5,717,574 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl195,672,180 - 5,701,361 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660851,211,121 - 1,263,900 (+)NCBIVero_WHO_p1.0
Tango2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624747647,571 - 686,870 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
RH144497  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21182,684,364 - 82,684,570 (+)MAPPERmRatBN7.2
Rnor_6.01186,832,348 - 86,832,553NCBIRnor6.0
Rnor_5.01189,926,286 - 89,926,491UniSTSRnor5.0
RGSC_v3.41184,678,432 - 84,678,637UniSTSRGSC3.4
Celera1181,461,375 - 81,461,580UniSTS
RH 3.4 Map11697.3UniSTS
Cytogenetic Map11q23UniSTS
BE102735  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21182,662,366 - 82,662,570 (+)MAPPERmRatBN7.2
Rnor_6.01186,810,353 - 86,810,556NCBIRnor6.0
Rnor_5.01189,904,291 - 89,904,494UniSTSRnor5.0
RGSC_v3.41184,656,436 - 84,656,639UniSTSRGSC3.4
Celera1181,439,380 - 81,439,583UniSTS
RH 3.4 Map11699.4UniSTS
Cytogenetic Map11q23UniSTS
AI763447  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21182,692,216 - 82,692,357 (+)MAPPERmRatBN7.2
Rnor_6.01186,840,199 - 86,840,339NCBIRnor6.0
Rnor_5.01189,934,137 - 89,934,277UniSTSRnor5.0
RGSC_v3.41184,686,283 - 84,686,423UniSTSRGSC3.4
Celera1181,469,226 - 81,469,366UniSTS
RH 3.4 Map11700.2UniSTS
Cytogenetic Map11q23UniSTS
BE119158  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21182,687,015 - 82,687,174 (+)MAPPERmRatBN7.2
Rnor_6.01186,834,999 - 86,835,157NCBIRnor6.0
Rnor_5.01189,928,937 - 89,929,095UniSTSRnor5.0
RGSC_v3.41184,681,083 - 84,681,241UniSTSRGSC3.4
Celera1181,464,026 - 81,464,184UniSTS
RH 3.4 Map11699.7UniSTS
Cytogenetic Map11q23UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)115445753486241447Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)115513672982993457Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)115635142486241447Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)116034659086241447Rat
634339Niddm50Non-insulin dependent diabetes mellitus QTL 503.32blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)116642214886241447Rat
1354593Stl12Serum triglyceride level QTL 123.36blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)116642214886241447Rat
1354656Bvd3Brain ventricular dilatation QTL 33.640.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)116944607082846715Rat
10450831Scl80Serum cholesterol level QTL 804.70.01blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)117695713183051965Rat
2302043Pia27Pristane induced arthritis QTL 2718.60.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)118256654583440803Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:247
Count of miRNA genes:151
Interacting mature miRNAs:170
Transcripts:ENSRNOT00000046594
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 27 18 7 18 5 8 68 29 17 8 5
Low 30 23 12 23 3 3 6 6 24 3 3
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001108323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006248632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006248633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005491043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC121199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000046594   ⟹   ENSRNOP00000044441
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1182,649,552 - 82,692,574 (+)Ensembl
Rnor_6.0 Ensembl1186,797,561 - 86,840,555 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000083049   ⟹   ENSRNOP00000070354
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1182,649,573 - 82,692,572 (+)Ensembl
Rnor_6.0 Ensembl1186,797,557 - 86,840,573 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000103259   ⟹   ENSRNOP00000081064
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1182,645,974 - 82,692,572 (+)Ensembl
RefSeq Acc Id: NM_001108323   ⟹   NP_001101793
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21182,649,575 - 82,692,573 (+)NCBI
Rnor_6.01186,797,561 - 86,840,555 (+)NCBI
Rnor_5.01189,887,900 - 89,934,494 (+)NCBI
RGSC_v3.41184,643,644 - 84,686,639 (+)RGD
Celera1181,426,587 - 81,469,582 (+)RGD
Sequence:
RefSeq Acc Id: XM_006248632   ⟹   XP_006248694
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21182,645,979 - 82,692,574 (+)NCBI
Rnor_6.01186,793,959 - 86,840,556 (+)NCBI
Rnor_5.01189,887,900 - 89,934,494 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006248633   ⟹   XP_006248695
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21182,645,984 - 82,692,574 (+)NCBI
Rnor_6.01186,793,961 - 86,840,556 (+)NCBI
Rnor_5.01189,887,900 - 89,934,494 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598030   ⟹   XP_017453519
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21182,649,422 - 82,692,574 (+)NCBI
Rnor_6.01186,797,448 - 86,840,556 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598031   ⟹   XP_017453520
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21182,649,524 - 82,692,574 (+)NCBI
Rnor_6.01186,797,563 - 86,840,556 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598033   ⟹   XP_017453522
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21182,649,423 - 82,692,574 (+)NCBI
Rnor_6.01186,797,449 - 86,840,556 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598036   ⟹   XP_017453525
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21182,645,983 - 82,692,574 (+)NCBI
Rnor_6.01186,793,960 - 86,840,556 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039088502   ⟹   XP_038944430
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21182,649,523 - 82,692,574 (+)NCBI
RefSeq Acc Id: XM_039088503   ⟹   XP_038944431
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21182,649,420 - 82,692,574 (+)NCBI
RefSeq Acc Id: XM_039088504   ⟹   XP_038944432
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21182,645,980 - 82,692,574 (+)NCBI
RefSeq Acc Id: XM_039088505   ⟹   XP_038944433
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21182,649,654 - 82,692,574 (+)NCBI
RefSeq Acc Id: XM_039088506   ⟹   XP_038944434
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21182,649,523 - 82,692,574 (+)NCBI
RefSeq Acc Id: XM_039088507   ⟹   XP_038944435
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21182,649,523 - 82,692,574 (+)NCBI
RefSeq Acc Id: XM_039088508   ⟹   XP_038944436
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21182,649,523 - 82,692,574 (+)NCBI
RefSeq Acc Id: XM_039088509   ⟹   XP_038944437
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21182,649,524 - 82,692,574 (+)NCBI
RefSeq Acc Id: XM_039088510   ⟹   XP_038944438
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21182,649,422 - 82,692,574 (+)NCBI
RefSeq Acc Id: XM_039088511   ⟹   XP_038944439
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21182,645,983 - 82,692,574 (+)NCBI
RefSeq Acc Id: XM_039088513   ⟹   XP_038944441
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21182,649,578 - 82,692,574 (+)NCBI
RefSeq Acc Id: XM_039088514   ⟹   XP_038944442
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21182,649,522 - 82,692,574 (+)NCBI
RefSeq Acc Id: XM_039088515   ⟹   XP_038944443
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21182,649,522 - 82,692,574 (+)NCBI
RefSeq Acc Id: XM_039088516   ⟹   XP_038944444
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21182,645,978 - 82,692,574 (+)NCBI
RefSeq Acc Id: XM_039088517   ⟹   XP_038944445
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21182,649,523 - 82,692,574 (+)NCBI
RefSeq Acc Id: XM_039088518   ⟹   XP_038944446
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21182,649,524 - 82,692,332 (+)NCBI
RefSeq Acc Id: XM_039088519   ⟹   XP_038944447
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21182,649,524 - 82,689,639 (+)NCBI
RefSeq Acc Id: XM_039088520   ⟹   XP_038944448
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21182,649,524 - 82,692,574 (+)NCBI
RefSeq Acc Id: XM_039088521   ⟹   XP_038944449
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21182,649,524 - 82,692,574 (+)NCBI
RefSeq Acc Id: XM_039088522   ⟹   XP_038944450
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21182,649,422 - 82,692,574 (+)NCBI
RefSeq Acc Id: XM_039088523   ⟹   XP_038944451
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21182,649,524 - 82,689,702 (+)NCBI
RefSeq Acc Id: XR_005491043
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21182,649,524 - 82,692,458 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001101793 (Get FASTA)   NCBI Sequence Viewer  
  XP_006248694 (Get FASTA)   NCBI Sequence Viewer  
  XP_006248695 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453519 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453520 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453522 (Get FASTA)   NCBI Sequence Viewer  
  XP_017453525 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944430 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944431 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944432 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944433 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944434 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944435 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944436 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944437 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944438 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944439 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944441 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944442 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944443 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944444 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944445 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944446 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944447 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944448 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944449 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944450 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944451 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL77933 (Get FASTA)   NCBI Sequence Viewer  
  EDL77934 (Get FASTA)   NCBI Sequence Viewer  
  EDL77935 (Get FASTA)   NCBI Sequence Viewer  
  EDL77936 (Get FASTA)   NCBI Sequence Viewer  
  EDL77937 (Get FASTA)   NCBI Sequence Viewer  
  EDL77938 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001101793   ⟸   NM_001108323
- UniProtKB: D3ZY86 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006248694   ⟸   XM_006248632
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006248695   ⟸   XM_006248633
- Peptide Label: isoform X8
- UniProtKB: D3ZY86 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453525   ⟸   XM_017598036
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_017453519   ⟸   XM_017598030
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_017453522   ⟸   XM_017598033
- Peptide Label: isoform X8
- UniProtKB: D3ZY86 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453520   ⟸   XM_017598031
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: ENSRNOP00000070354   ⟸   ENSRNOT00000083049
RefSeq Acc Id: ENSRNOP00000044441   ⟸   ENSRNOT00000046594
RefSeq Acc Id: XP_038944444   ⟸   XM_039088516
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038944432   ⟸   XM_039088504
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038944439   ⟸   XM_039088511
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038944431   ⟸   XM_039088503
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038944438   ⟸   XM_039088510
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038944450   ⟸   XM_039088522
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038944443   ⟸   XM_039088515
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038944442   ⟸   XM_039088514
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038944436   ⟸   XM_039088508
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038944430   ⟸   XM_039088502
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038944435   ⟸   XM_039088507
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038944434   ⟸   XM_039088506
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038944445   ⟸   XM_039088517
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038944437   ⟸   XM_039088509
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038944448   ⟸   XM_039088520
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038944449   ⟸   XM_039088521
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038944446   ⟸   XM_039088518
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038944451   ⟸   XM_039088523
- Peptide Label: isoform X17
RefSeq Acc Id: XP_038944447   ⟸   XM_039088519
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038944441   ⟸   XM_039088513
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038944433   ⟸   XM_039088505
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000081064   ⟸   ENSRNOT00000103259

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JXP4-F1-model_v2 AlphaFold A0A0G2JXP4 1-286 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698316
Promoter ID:EPDNEW_R8829
Type:multiple initiation site
Name:Tango2_1
Description:transport and golgi organization 2 homolog
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01186,797,530 - 86,797,590EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310348 AgrOrtholog
BioCyc Gene G2FUF-20656 BioCyc
Ensembl Genes ENSRNOG00000030245 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000044441 ENTREZGENE
  ENSRNOP00000044441.3 UniProtKB/TrEMBL
  ENSRNOP00000070354 ENTREZGENE
  ENSRNOP00000070354.1 UniProtKB/TrEMBL
  ENSRNOP00000081064 ENTREZGENE
  ENSRNOP00000081064.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000046594 ENTREZGENE
  ENSRNOT00000046594.6 UniProtKB/TrEMBL
  ENSRNOT00000083049 ENTREZGENE
  ENSRNOT00000083049.2 UniProtKB/TrEMBL
  ENSRNOT00000103259 ENTREZGENE
  ENSRNOT00000103259.1 UniProtKB/TrEMBL
InterPro DUF833 UniProtKB/TrEMBL
KEGG Report rno:360738 UniProtKB/TrEMBL
NCBI Gene 360738 ENTREZGENE
PANTHER DUF833 UniProtKB/TrEMBL
Pfam DUF833 UniProtKB/TrEMBL
PhenoGen Tango2 PhenoGen
UniProt A0A0G2JXP4_RAT UniProtKB/TrEMBL
  A0A8I6G5G3_RAT UniProtKB/TrEMBL
  D3ZY86 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-09 Tango2  transport and golgi organization 2 homolog  Tango2  transport and golgi organization 2 homolog (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-01-02 Tango2  transport and golgi organization 2 homolog (Drosophila)  RGD1310348  similar to Ser/Thr-rich protein T10 in DGCR region  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1310348  similar to Ser/Thr-rich protein T10 in DGCR region   RGD1310348_predicted  similar to Ser/Thr-rich protein T10 in DGCR region (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1310348_predicted  similar to Ser/Thr-rich protein T10 in DGCR region (predicted)  LOC360738_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC360738_predicted  similar to Ser/Thr-rich protein T10 in DGCR region (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL