LOC681544 (similar to histidine-rich glycoprotein) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: LOC681544 (similar to histidine-rich glycoprotein) Rattus norvegicus
Analyze
Symbol: LOC681544
Name: similar to histidine-rich glycoprotein
RGD ID: 1594092
Description: ENCODES a protein that exhibits heme binding (ortholog); heparan sulfate proteoglycan binding (ortholog); heparin binding (ortholog); INVOLVED IN defense response to fungus (ortholog); negative regulation of angiogenesis (ortholog); negative regulation of blood vessel endothelial cell migration (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: histidine-rich glycoprotein 2; histidine-rich glycoprotein-like; Hrg; RNHRG2
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21178,039,371 - 78,049,353 (-)NCBI
Rnor_6.0 Ensembl1181,621,283 - 81,639,952 (-)EnsemblRnor6.0rn6Rnor6.0
Celera1176,911,947 - 76,921,941 (-)NCBICelera
Cytogenetic Map11 NCBI


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Additional References at PubMed
PMID:10849117  


Genomics

Position Markers
RH130910  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01181,621,402 - 81,621,602NCBIRnor6.0
Rnor_5.01184,718,354 - 84,718,554UniSTSRnor5.0
RGSC_v3.41180,248,706 - 80,248,906UniSTSRGSC3.4
RGSC_v3.41180,230,715 - 80,230,915UniSTSRGSC3.4
Celera1176,912,075 - 76,912,275UniSTS
Celera1176,927,186 - 76,927,386UniSTS
RH 3.4 Map11642.2UniSTS
Cytogenetic Map11q23UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: NM_001329900   ⟹   NP_001316829
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21178,039,371 - 78,049,353 (-)NCBI
RefSeq Acc Id: XM_001057320   ⟹   XP_001057320
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1176,911,947 - 76,921,941 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001316829 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAG28417 (Get FASTA)   NCBI Sequence Viewer  
  BAB33093 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_001057320   ⟸   XM_001057320
- Sequence:
RefSeq Acc Id: NP_001316829   ⟸   NM_001329900
- Peptide Label: precursor
- UniProtKB: Q99PS8 (UniProtKB/Swiss-Prot)
Protein Domains
Cystatin

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000001809 Ensembl, UniProtKB/Swiss-Prot
Ensembl Protein ENSRNOP00000049290 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000047595 UniProtKB/Swiss-Prot
InterPro Cystatin_dom UniProtKB/Swiss-Prot
KEGG Report rno:171016 UniProtKB/Swiss-Prot
  rno:681544 UniProtKB/Swiss-Prot
NCBI Gene 681544 ENTREZGENE
PhenoGen LOC681544 PhenoGen
SMART SM00043 UniProtKB/Swiss-Prot
UniProt HRG_RAT UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary D3ZJN0 UniProtKB/Swiss-Prot
  Q99PS7 UniProtKB/Swiss-Prot
  Q9ESB2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-11-20 LOC681544  similar to histidine-rich glycoprotein      Symbol and Name status set to provisional 70820 PROVISIONAL