Teddm3 (transmembrane epididymal family member 3) - Rat Genome Database

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Gene: Teddm3 (transmembrane epididymal family member 3) Rattus norvegicus
Analyze
Symbol: Teddm3 (Ensembl: RGD1560559)
Name: transmembrane epididymal family member 3 (Ensembl:similar to RIKEN cDNA 2310042E22)
RGD ID: 1560559
Description: Predicted to be located in membrane; INTERACTS WITH 17beta-estradiol; 3,7-dihydropurine-6-thione; acrylamide.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC303817; RGD1560559; similar to RIKEN cDNA 2310042E22; transmembrane epididymal protein 1A-like
RGD Orthologs
Mouse
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81193,493,233 - 93,494,572 (-)NCBIGRCr8
mRatBN7.21179,988,984 - 79,990,143 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1179,989,077 - 79,989,961 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01183,675,801 - 83,677,157 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1183,676,072 - 83,676,952 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01186,749,637 - 86,750,945 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41182,188,243 - 82,189,394 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1178,831,681 - 78,833,037 (-)NCBICelera
Cytogenetic Map11q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Teddm3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81193,493,233 - 93,494,572 (-)NCBIGRCr8
mRatBN7.21179,988,984 - 79,990,143 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1179,989,077 - 79,989,961 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01183,675,801 - 83,677,157 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1183,676,072 - 83,676,952 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01186,749,637 - 86,750,945 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41182,188,243 - 82,189,394 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1178,831,681 - 78,833,037 (-)NCBICelera
Cytogenetic Map11q23NCBI
Teddm3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391620,971,409 - 20,972,694 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1620,971,405 - 20,972,750 (-)EnsemblGRCm39 Ensembl
GRCm381621,152,659 - 21,153,944 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1621,152,655 - 21,154,000 (-)EnsemblGRCm38mm10GRCm38
MGSCv371621,152,732 - 21,154,017 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361621,066,652 - 21,067,927 (-)NCBIMGSCv36mm8
Celera1621,717,922 - 21,719,207 (-)NCBICelera
Cytogenetic Map16B1NCBI
cM Map1612.61NCBI

Variants

.
Variants in Teddm3
9 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:112
Count of miRNA genes:91
Interacting mature miRNAs:102
Transcripts:ENSRNOT00000031780
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)114094618882566702Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)114428575982566702Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)115445753486241447Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)115513672982993457Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)115635142486241447Rat
631506Bp104Blood pressure QTL 1042.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)115980279482566545Rat
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)115980279482566553Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)116034659086241447Rat
1549848Bvd6Brain ventricular dilatation QTL 63.10.0001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)116611332182169223Rat
634339Niddm50Non-insulin dependent diabetes mellitus QTL 503.32blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)116642214886241447Rat
1354593Stl12Serum triglyceride level QTL 123.36blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)116642214886241447Rat
1354656Bvd3Brain ventricular dilatation QTL 33.640.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)116944607082846715Rat
10450831Scl80Serum cholesterol level QTL 804.70.01blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)117695713183051965Rat

Markers in Region
RH141507  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21179,988,919 - 79,989,119 (+)MAPPERmRatBN7.2
Rnor_6.01183,675,911 - 83,676,110NCBIRnor6.0
Rnor_5.01186,749,729 - 86,749,928UniSTSRnor5.0
RGSC_v3.41182,188,353 - 82,188,552UniSTSRGSC3.4
Celera1178,831,791 - 78,831,990UniSTS
RH 3.4 Map11658.3UniSTS
Cytogenetic Map11q23UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 6
Low 1 1 10 1
Below cutoff 14 8 12 8 2 2 12 14 24 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000031780
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1179,989,077 - 79,989,961 (-)Ensembl
Rnor_6.0 Ensembl1183,676,072 - 83,676,952 (-)Ensembl
RefSeq Acc Id: XM_221310   ⟹   XP_221310
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81193,493,233 - 93,494,572 (-)NCBI
mRatBN7.21179,988,984 - 79,990,143 (-)NCBI
Rnor_6.01183,675,801 - 83,677,157 (-)NCBI
Rnor_5.01186,749,637 - 86,750,945 (-)NCBI
RGSC_v3.41182,188,243 - 82,189,394 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs XP_221310 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000093813
  ENSRNOP00000093813.1
Reference Protein Sequences
RefSeq Acc Id: XP_221310   ⟸   XM_221310
- UniProtKB: A0A8I6AKS7 (UniProtKB/TrEMBL)
- Sequence:

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-20769 BioCyc
Ensembl Genes ENSRNOG00000025031 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000031780.6 UniProtKB/TrEMBL
InterPro DUF716 UniProtKB/TrEMBL
KEGG Report rno:303817 UniProtKB/TrEMBL
NCBI Gene 303817 ENTREZGENE
PANTHER TRANSMEMBRANE EPIDIDYMAL FAMILY MEMBER 3 UniProtKB/TrEMBL
  TRANSMEMBRANE EPIDIDYMAL FAMILY MEMBER 3 UniProtKB/TrEMBL
Pfam DUF716 UniProtKB/TrEMBL
PhenoGen Teddm3 PhenoGen
RatGTEx ENSRNOG00000025031 RatGTEx
UniProt A0A8I6AKS7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-02-16 Teddm3  transmembrane epididymal family member 3  RGD1560559  similar to RIKEN cDNA 2310042E22  Name and Symbol changed 629549 APPROVED
2008-04-30 RGD1560559  similar to RIKEN cDNA 2310042E22   RGD1560559_predicted  similar to RIKEN cDNA 2310042E22 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1560559_predicted  similar to RIKEN cDNA 2310042E22 (predicted)  LOC303817  similar to RIKEN cDNA 2310042E22  Symbol and Name status set to approved 1299863 APPROVED