Teddm3 (transmembrane epididymal family member 3) - Rat Genome Database

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Gene: Teddm3 (transmembrane epididymal family member 3) Rattus norvegicus
Analyze
Symbol: Teddm3
Name: transmembrane epididymal family member 3
RGD ID: 1560559
Description: Predicted to be located in membrane; INTERACTS WITH 17beta-estradiol; 3,7-dihydropurine-6-thione; acrylamide.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC303817; RGD1560559; similar to RIKEN cDNA 2310042E22; transmembrane epididymal protein 1A-like
RGD Orthologs
Mouse
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81193,493,233 - 93,494,572 (-)NCBIGRCr8
mRatBN7.21179,988,984 - 79,990,143 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1179,989,077 - 79,989,961 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01183,675,801 - 83,677,157 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1183,676,072 - 83,676,952 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01186,749,637 - 86,750,945 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41182,188,243 - 82,189,394 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1178,831,681 - 78,833,037 (-)NCBICelera
Cytogenetic Map11q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 12 of 12 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Teddm3Rat17beta-estradiol multiple interactionsEXP 6480464[bisphenol A co-treated with Estradiol] results in increased expression of TEDDM3 mRNACTDPMID:26496021
Teddm3Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOTeddm3 (Mus musculus)6480464Tetrachlorodibenzodioxin results in increased expression of TEDDM3 mRNACTDPMID:26290441
Teddm3Rat3,7-dihydropurine-6-thione increases expressionEXP 6480464Mercaptopurine results in increased expression of TEDDM3 mRNACTDPMID:23358152
Teddm3Ratacrylamide affects expressionEXP 6480464Acrylamide affects the expression of TEDDM3 mRNACTDPMID:28959563
Teddm3Ratbisphenol A multiple interactionsEXP 6480464[bisphenol A co-treated with Estradiol] results in increased expression of TEDDM3 mRNA and [bisphenol A co-treated with Testosterone] results in increased expression of TEDDM3 mRNACTDPMID:26496021
Teddm3Ratchromium(6+) affects expressionISOTeddm3 (Mus musculus)6480464chromium hexavalent ion affects the expression of TEDDM3 mRNACTDPMID:28472532
Teddm3Ratchrysene increases expressionISOTeddm3 (Mus musculus)6480464chrysene results in increased expression of TEDDM3 mRNACTDPMID:26377693
Teddm3Ratfenvalerate increases expressionEXP 6480464fenvalerate results in increased expression of TEDDM3 mRNACTDPMID:30307764
Teddm3Ratmercaptopurine increases expressionEXP 6480464Mercaptopurine results in increased expression of TEDDM3 mRNACTDPMID:23358152
Teddm3Ratpurine-6-thiol increases expressionEXP 6480464Mercaptopurine results in increased expression of TEDDM3 mRNACTDPMID:23358152
Teddm3Rattestosterone multiple interactionsEXP 6480464[bisphenol A co-treated with Testosterone] results in increased expression of TEDDM3 mRNACTDPMID:26496021
Teddm3Rattitanium dioxide decreases expressionISOTeddm3 (Mus musculus)6480464titanium dioxide results in decreased expression of TEDDM3 mRNACTDPMID:29264374

1 to 12 of 12 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Teddm3Ratmembrane located_inIEAUniProtKB-SubCell:SL-01621600115GO_REF:0000044UniProtGO_REF:0000044
Teddm3Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043


#
Reference Title
Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions


Teddm3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81193,493,233 - 93,494,572 (-)NCBIGRCr8
mRatBN7.21179,988,984 - 79,990,143 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1179,989,077 - 79,989,961 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01183,675,801 - 83,677,157 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1183,676,072 - 83,676,952 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01186,749,637 - 86,750,945 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41182,188,243 - 82,189,394 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1178,831,681 - 78,833,037 (-)NCBICelera
Cytogenetic Map11q23NCBI
Teddm3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391620,971,409 - 20,972,694 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1620,971,405 - 20,972,750 (-)EnsemblGRCm39 Ensembl
GRCm381621,152,659 - 21,153,944 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1621,152,655 - 21,154,000 (-)EnsemblGRCm38mm10GRCm38
MGSCv371621,152,732 - 21,154,017 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361621,066,652 - 21,067,927 (-)NCBIMGSCv36mm8
Celera1621,717,922 - 21,719,207 (-)NCBICelera
Cytogenetic Map16B1NCBI
cM Map1612.61NCBI

.

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Variants in Teddm3
9 total Variants

Predicted Target Of
Summary Value
Count of predictions:112
Count of miRNA genes:91
Interacting mature miRNAs:102
Transcripts:ENSRNOT00000031780
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 18 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)115980279482566553Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
634339Niddm50Non-insulin dependent diabetes mellitus QTL 503.32blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)116642214886241447Rat
1549848Bvd6Brain ventricular dilatation QTL 63.10.0001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)116611332182169223Rat
10450831Scl80Serum cholesterol level QTL 804.70.01blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)117695713183051965Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)116034659086241447Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)114094618882566702Rat
1354656Bvd3Brain ventricular dilatation QTL 33.640.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)116944607082846715Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)114428575982566702Rat

1 to 10 of 18 rows
RH141507  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81193,493,342 - 93,493,542 (+)Marker Load Pipeline
mRatBN7.21179,988,919 - 79,989,119 (+)MAPPERmRatBN7.2
Rnor_6.01183,675,911 - 83,676,110NCBIRnor6.0
Rnor_5.01186,749,729 - 86,749,928UniSTSRnor5.0
RGSC_v3.41182,188,353 - 82,188,552UniSTSRGSC3.4
Celera1178,831,791 - 78,831,990UniSTS
RH 3.4 Map11658.3UniSTS
Cytogenetic Map11q23UniSTS




appendage
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
2 30 21 20 9 18 9 1 57 22 25 24 52 11


RefSeq Transcripts XM_001058776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_221310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000031780
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1179,989,077 - 79,989,961 (-)Ensembl
Rnor_6.0 Ensembl1183,676,072 - 83,676,952 (-)Ensembl
RefSeq Acc Id: XM_221310   ⟹   XP_221310
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81193,493,233 - 93,494,572 (-)NCBI
mRatBN7.21179,988,984 - 79,990,143 (-)NCBI
Rnor_6.01183,675,801 - 83,677,157 (-)NCBI
Rnor_5.01186,749,637 - 86,750,945 (-)NCBI
RGSC_v3.41182,188,243 - 82,189,394 (-)RGD
Sequence:
Protein RefSeqs XP_221310 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000093813
  ENSRNOP00000093813.1
RefSeq Acc Id: XP_221310   ⟸   XM_221310
- UniProtKB: A0A8I6AKS7 (UniProtKB/TrEMBL)
- Sequence:


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 13 of 13 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-20769 BioCyc
Ensembl Genes ENSRNOG00000025031 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000031780 ENTREZGENE
  ENSRNOT00000031780.6 UniProtKB/TrEMBL
InterPro DUF716 UniProtKB/TrEMBL
KEGG Report rno:303817 UniProtKB/TrEMBL
NCBI Gene 303817 ENTREZGENE
PANTHER TRANSMEMBRANE EPIDIDYMAL FAMILY MEMBER 3 UniProtKB/TrEMBL
  TRANSMEMBRANE EPIDIDYMAL FAMILY MEMBER 3 UniProtKB/TrEMBL
Pfam DUF716 UniProtKB/TrEMBL
PhenoGen Teddm3 PhenoGen
RatGTEx ENSRNOG00000025031 RatGTEx
UniProt A0A8I6AKS7 ENTREZGENE, UniProtKB/TrEMBL
1 to 13 of 13 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-02-16 Teddm3  transmembrane epididymal family member 3  RGD1560559  similar to RIKEN cDNA 2310042E22  Name and Symbol changed 629549 APPROVED
2008-04-30 RGD1560559  similar to RIKEN cDNA 2310042E22   RGD1560559_predicted  similar to RIKEN cDNA 2310042E22 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1560559_predicted  similar to RIKEN cDNA 2310042E22 (predicted)  LOC303817  similar to RIKEN cDNA 2310042E22  Symbol and Name status set to approved 1299863 APPROVED