Snord66 (small nucleolar RNA, C/D box 66) - Rat Genome Database

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Gene: Snord66 (small nucleolar RNA, C/D box 66) Rattus norvegicus
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Symbol: Snord66
Name: small nucleolar RNA, C/D box 66
RGD ID: 40973363
Description: Orthologous to human SNORD66 (small nucleolar RNA, C/D box 66); INTERACTS WITH 2-hydroxypropanoic acid (ortholog); aflatoxin B1 (ortholog); benzene-1,2,4-triol (ortholog).
Type: snorna
RefSeq Status: MODEL
Previously known as: LOC120095772; small nucleolar RNA SNORD66
RGD Orthologs
Human
Mouse
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81193,734,555 - 93,734,629 (-)NCBIGRCr8
mRatBN7.21180,230,152 - 80,230,226 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1180,230,152 - 80,230,226 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1183,915,892 - 83,915,966 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map11q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Snord66RatCurrarino syndrome  ISOSNORD66 (Homo sapiens)8554872ClinVar Annotator: match by term: Currarino triadClinVarPMID:21681106 and PMID:27549440


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Snord66Rat2-hydroxypropanoic acid increases expressionISOSNORD66 (Homo sapiens)6480464Lactic Acid results in increased expression of SNORD66 mRNACTDPMID:30851411
Snord66Rataflatoxin B1 increases methylationISOSNORD66 (Homo sapiens)6480464Aflatoxin B1 results in increased methylation of SNORD66 geneCTDPMID:27153756
Snord66Ratbenzene-1,2,4-triol increases expressionISOSNORD66 (Homo sapiens)6480464hydroxyhydroquinone results in increased expression of SNORD66 mRNACTDPMID:39245080
Snord66Ratrac-lactic acid increases expressionISOSNORD66 (Homo sapiens)6480464Lactic Acid results in increased expression of SNORD66 mRNACTDPMID:30851411



Snord66
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81193,734,555 - 93,734,629 (-)NCBIGRCr8
mRatBN7.21180,230,152 - 80,230,226 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1180,230,152 - 80,230,226 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1183,915,892 - 83,915,966 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map11q23NCBI
SNORD66
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383184,325,696 - 184,325,771 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3184,325,696 - 184,325,771 (+)EnsemblGRCh38hg38GRCh38
GRCh373184,043,484 - 184,043,559 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363185,526,178 - 185,526,253 (+)NCBINCBI36Build 36hg18NCBI36
Celera3182,484,380 - 182,484,455 (+)NCBICelera
Cytogenetic Map3q27.1NCBI
HuRef3181,450,110 - 181,450,185 (+)NCBIHuRef
CHM1_13184,007,940 - 184,008,015 (+)NCBICHM1_1
T2T-CHM13v2.03187,134,956 - 187,135,031 (+)NCBIT2T-CHM13v2.0
Snord66
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391620,503,006 - 20,503,063 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1620,502,989 - 20,503,063 (+)EnsemblGRCm39 Ensembl
GRCm381620,684,256 - 20,684,313 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1620,684,239 - 20,684,313 (+)EnsemblGRCm38mm10GRCm38
MGSCv371620,684,329 - 20,684,386 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1621,249,628 - 21,249,685 (+)NCBICelera
Cytogenetic Map16A3NCBI
cM Map1612.5NCBI
LOC119867571
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha3421,291,011 - 21,291,086 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03417,112,925 - 17,113,000 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13417,149,826 - 17,149,901 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03417,145,909 - 17,145,984 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03417,374,865 - 17,374,940 (+)NCBIUU_Cfam_GSD_1.0

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Variants in Snord66
1 total Variants

1 to 10 of 18 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)115980279482566553Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
634339Niddm50Non-insulin dependent diabetes mellitus QTL 503.32blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)116642214886241447Rat
1549848Bvd6Brain ventricular dilatation QTL 63.10.0001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)116611332182169223Rat
10450831Scl80Serum cholesterol level QTL 804.70.01blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)117695713183051965Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)116034659086241447Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)114094618882566702Rat
1354656Bvd3Brain ventricular dilatation QTL 33.640.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)116944607082846715Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)114428575982566702Rat

1 to 10 of 18 rows





RefSeq Transcripts XR_005491556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000089119
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1180,230,152 - 80,230,226 (-)Ensembl
RefSeq Acc Id: XR_005491556
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81193,734,555 - 93,734,629 (-)NCBI
mRatBN7.21180,230,152 - 80,230,226 (-)NCBI

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-20750 BioCyc
Ensembl Genes ENSRNOG00000056119 Ensembl
NCBI Gene LOC120095772 ENTREZGENE
PhenoGen Snord66 PhenoGen
RatGTEx ENSRNOG00000056119 RatGTEx
RNAcentral URS0000689956 RNACentral


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-07-08 Snord66  small nucleolar RNA, C/D box 66  LOC120095772  small nucleolar RNA SNORD66  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2022-06-02 LOC120095772  small nucleolar RNA SNORD66  Snord66  small nucleolar RNA, C/D box 66  Data merged from RGD:15009989 737654 PROVISIONAL
2021-01-26 LOC120095772  small nucleolar RNA SNORD66      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 Snord66  small nucleolar RNA, C/D box 66      Symbol and Name status set to provisional 45752 PROVISIONAL