Arhgap31 (Rho GTPase activating protein 31) - Rat Genome Database

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Gene: Arhgap31 (Rho GTPase activating protein 31) Rattus norvegicus
Analyze
Symbol: Arhgap31
Name: Rho GTPase activating protein 31
RGD ID: 1306093
Description: Predicted to enable GTPase activator activity and SH3 domain binding activity. Predicted to be involved in small GTPase-mediated signal transduction. Predicted to be active in lamellipodium. Human ortholog(s) of this gene implicated in Adams-Oliver syndrome and coronary artery disease. Orthologous to human ARHGAP31 (Rho GTPase activating protein 31); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acetamide; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Cdc42 GTPase-activating protein; Cdgap; LOC288093; rho GTPase-activating protein 31
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81175,544,176 - 75,657,087 (+)NCBIGRCr8
mRatBN7.21162,038,635 - 62,151,564 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1162,038,635 - 62,151,564 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1170,851,189 - 70,964,088 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01163,513,440 - 63,626,349 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01162,564,734 - 62,677,535 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01164,600,968 - 64,714,114 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1164,601,029 - 64,714,252 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01167,395,537 - 67,508,274 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41163,814,916 - 63,929,011 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11163,872,720 - 63,986,540 (+)NCBI
Celera1161,541,526 - 61,654,475 (+)NCBICelera
Cytogenetic Map11q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
lamellipodium  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Validation study of genetic associations with coronary artery disease on chromosome 3q13-21 and potential effect modification by smoking. Horne BD, etal., Ann Hum Genet. 2009 Nov;73(Pt 6):551-8. doi: 10.1111/j.1469-1809.2009.00540.x. Epub 2009 Aug 25.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11744688  


Genomics

Comparative Map Data
Arhgap31
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81175,544,176 - 75,657,087 (+)NCBIGRCr8
mRatBN7.21162,038,635 - 62,151,564 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1162,038,635 - 62,151,564 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1170,851,189 - 70,964,088 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01163,513,440 - 63,626,349 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01162,564,734 - 62,677,535 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01164,600,968 - 64,714,114 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1164,601,029 - 64,714,252 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01167,395,537 - 67,508,274 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41163,814,916 - 63,929,011 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11163,872,720 - 63,986,540 (+)NCBI
Celera1161,541,526 - 61,654,475 (+)NCBICelera
Cytogenetic Map11q21NCBI
ARHGAP31
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383119,294,383 - 119,420,714 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3119,294,383 - 119,420,714 (+)EnsemblGRCh38hg38GRCh38
GRCh373119,013,230 - 119,139,561 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363120,495,910 - 120,619,254 (+)NCBINCBI36Build 36hg18NCBI36
Celera3117,421,692 - 117,546,790 (+)NCBICelera
Cytogenetic Map3q13.32-q13.33NCBI
HuRef3116,388,684 - 116,513,719 (+)NCBIHuRef
CHM1_13118,976,689 - 119,101,812 (+)NCBICHM1_1
T2T-CHM13v2.03122,014,089 - 122,140,425 (+)NCBIT2T-CHM13v2.0
Arhgap31
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391638,418,705 - 38,533,397 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1638,418,702 - 38,533,636 (-)EnsemblGRCm39 Ensembl
GRCm381638,598,343 - 38,713,035 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1638,598,340 - 38,713,274 (-)EnsemblGRCm38mm10GRCm38
MGSCv371638,598,456 - 38,713,148 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361638,517,675 - 38,632,367 (-)NCBIMGSCv36mm8
Celera1639,010,417 - 39,125,124 (-)NCBICelera
Cytogenetic Map16B4NCBI
cM Map1626.87NCBI
Arhgap31
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542719,019,511 - 19,131,755 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542719,019,008 - 19,136,298 (+)NCBIChiLan1.0ChiLan1.0
ARHGAP31
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22117,265,933 - 117,393,855 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13117,270,771 - 117,395,513 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03116,412,238 - 116,536,900 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13123,324,166 - 123,450,236 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3123,324,166 - 123,450,236 (+)Ensemblpanpan1.1panPan2
ARHGAP31
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13322,965,941 - 23,079,590 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3322,965,599 - 23,074,943 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3322,997,524 - 23,117,417 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03323,203,701 - 23,317,657 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3323,203,119 - 23,312,748 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13323,006,505 - 23,122,494 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03323,044,238 - 23,157,273 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03323,612,197 - 23,731,463 (+)NCBIUU_Cfam_GSD_1.0
Arhgap31
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602131,151,620 - 131,260,229 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365366,261,910 - 6,365,782 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365366,261,837 - 6,369,318 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARHGAP31
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13140,839,268 - 140,948,303 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113140,837,078 - 140,948,504 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213150,136,809 - 150,239,772 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ARHGAP31
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12261,415,805 - 61,543,679 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2261,415,804 - 61,543,834 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041104,786,579 - 104,909,803 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arhgap31
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473128,785,015 - 28,894,645 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473128,780,180 - 28,894,018 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Arhgap31
889 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:52
Count of miRNA genes:52
Interacting mature miRNAs:52
Transcripts:ENSRNOT00000004138
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)115980279482566553Rat
70180BpQTLcluster10Blood pressure QTL cluster 103.19arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)113491804179918041Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
4889859Pur28Proteinuria QTL 2819.50.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)114545932375190161Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)116034659086241447Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)113123913478851519Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)114094618882566702Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)114428575982566702Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)115445753486241447Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)115513672982993457Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)115635142486241447Rat
631506Bp104Blood pressure QTL 1042.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)115980279482566545Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat

Markers in Region
D11Rat83  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21162,138,330 - 62,138,486 (+)MAPPERmRatBN7.2
Rnor_6.01164,700,721 - 64,700,872NCBIRnor6.0
Rnor_5.01167,408,779 - 67,408,930UniSTSRnor5.0
RGSC_v3.41163,915,780 - 63,915,932RGDRGSC3.4
RGSC_v3.41163,915,781 - 63,915,932UniSTSRGSC3.4
RGSC_v3.11163,973,360 - 63,973,726RGD
Celera1161,641,267 - 61,641,418UniSTS
FHH x ACI Map1144.0199RGD
FHH x ACI Map1144.0199UniSTS
Cytogenetic Map11q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000004138   ⟹   ENSRNOP00000004138
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1162,038,635 - 62,151,564 (+)Ensembl
Rnor_6.0 Ensembl1164,601,029 - 64,714,252 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000108978   ⟹   ENSRNOP00000094973
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1162,106,112 - 62,151,564 (+)Ensembl
RefSeq Acc Id: NM_001105879   ⟹   NP_001099349
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,544,176 - 75,657,087 (+)NCBI
mRatBN7.21162,038,635 - 62,151,564 (+)NCBI
Rnor_6.01164,600,968 - 64,714,114 (+)NCBI
Rnor_5.01167,395,537 - 67,508,274 (-)NCBI
RGSC_v3.41163,814,916 - 63,929,011 (+)RGD
Celera1161,541,526 - 61,654,475 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001099349 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM11210 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000004138.4
  ENSRNOP00000094973.1
RefSeq Acc Id: NP_001099349   ⟸   NM_001105879
- UniProtKB: D4A987 (UniProtKB/TrEMBL),   A6IR57 (UniProtKB/TrEMBL),   A0A8I6AML1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000004138   ⟸   ENSRNOT00000004138
Ensembl Acc Id: ENSRNOP00000094973   ⟸   ENSRNOT00000108978
Protein Domains
Rho-GAP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A987-F1-model_v2 AlphaFold D4A987 1-1428 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698163
Promoter ID:EPDNEW_R8687
Type:initiation region
Name:Arhgap31_1
Description:Rho GTPase activating protein 31
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01164,600,982 - 64,601,042EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306093 AgrOrtholog
BioCyc Gene G2FUF-21283 BioCyc
Ensembl Genes ENSRNOG00000003088 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000004138.6 UniProtKB/TrEMBL
  ENSRNOT00000108978.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.555.10 UniProtKB/TrEMBL
InterPro PX-Rho_GAP UniProtKB/TrEMBL
  Rho_GTPase_activation_prot UniProtKB/TrEMBL
  RhoGAP UniProtKB/TrEMBL
KEGG Report rno:288093 UniProtKB/TrEMBL
NCBI Gene 288093 ENTREZGENE
PANTHER CDC42 GTPASE-ACTIVATING PROTEIN UniProtKB/TrEMBL
  RHO GTPASE-ACTIVATING PROTEIN 31 UniProtKB/TrEMBL
Pfam RhoGAP UniProtKB/TrEMBL
PhenoGen Arhgap31 PhenoGen
PROSITE RHOGAP UniProtKB/TrEMBL
RatGTEx ENSRNOG00000003088 RatGTEx
SMART RhoGAP UniProtKB/TrEMBL
Superfamily-SCOP Rho_GAP UniProtKB/TrEMBL
UniProt A0A8I6AML1 ENTREZGENE, UniProtKB/TrEMBL
  A6IR57 ENTREZGENE, UniProtKB/TrEMBL
  D4A987 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-29 Arhgap31  Rho GTPase activating protein 31  Cdgap  Cdc42 GTPase-activating protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Cdgap  Cdc42 GTPase-activating protein   Cdgap_predicted  Cdc42 GTPase-activating protein (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Cdgap_predicted  Cdc42 GTPase-activating protein (predicted)      Symbol and Name status set to approved 70820 APPROVED