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Gene: Ccdc116 (coiled-coil domain containing 116) Rattus norvegicus
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Symbol: Ccdc116
Name: coiled-coil domain containing 116
Description: Predicted to localize to the centrosome. Orthologous to human CCDC116 (coiled-coil domain containing 116); INTERACTS WITH 6-propyl-2-thiouracil; bisphenol A; methamphetamine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: coiled-coil domain-containing protein 116; LOC287936; Sdf2l1; stromal cell-derived factor 2-like 1
Orthologs:
Homo sapiens (human) : CCDC116 (coiled-coil domain containing 116)  HGNC  Alliance
Mus musculus (house mouse) : Ccdc116 (coiled-coil domain containing 116)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Ccdc116 (coiled-coil domain containing 116)
Pan paniscus (bonobo/pygmy chimpanzee) : CCDC116 (coiled-coil domain containing 116)
Canis lupus familiaris (dog) : CCDC116 (coiled-coil domain containing 116)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Ccdc116 (coiled-coil domain containing 116)
Sus scrofa (pig) : LOC100154312 (coiled-coil domain-containing protein 116)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01188,092,794 - 88,100,220 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01191,147,583 - 91,150,783 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41185,849,737 - 85,852,819 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11185,890,333 - 85,893,416 (+)NCBI
Celera1182,607,768 - 82,610,850 (+)NCBICelera
Cytogenetic Map11q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Ccdc116
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1310080
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.