Fam162a (family with sequence similarity 162, member A) - Rat Genome Database

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Gene: Fam162a (family with sequence similarity 162, member A) Rattus norvegicus
Analyze
Symbol: Fam162a
Name: family with sequence similarity 162, member A
RGD ID: 1590883
Description: Predicted to be involved in several processes, including cellular response to hypoxia; neuron apoptotic process; and positive regulation of release of cytochrome c from mitochondria. Predicted to be located in cytosol. Predicted to be active in mitochondrion. Orthologous to human FAM162A (family with sequence similarity 162 member A); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2-nitrofluorene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: E2-induced gene 5 protein homolog; growth and transformation-dependent protein; LOC360721; MGC116101
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81178,186,260 - 78,215,186 (+)NCBIGRCr8
mRatBN7.21164,680,978 - 64,709,865 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1164,680,323 - 64,711,239 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1173,505,954 - 73,535,213 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01166,168,216 - 66,197,475 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01165,199,464 - 65,228,723 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01167,618,683 - 67,646,253 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1167,618,625 - 67,646,253 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01170,706,160 - 70,733,730 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41166,518,103 - 66,546,302 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1164,149,247 - 64,177,230 (+)NCBICelera
Cytogenetic Map11q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
2-nitrofluorene  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (EXP)
aconitine  (EXP)
acrylamide  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
cadmium dichloride  (ISO)
capsaicin  (EXP)
carbamazepine  (ISO)
carbon nanotube  (ISO)
chloroacetaldehyde  (ISO)
chromium(6+)  (ISO)
cidofovir anhydrous  (ISO)
cisplatin  (ISO)
clodronic acid  (ISO)
cobalt dichloride  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
diethylstilbestrol  (EXP)
dioxygen  (ISO)
disodium selenite  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
epoxiconazole  (ISO)
ethyl methanesulfonate  (ISO)
fipronil  (EXP)
fluoranthene  (ISO)
folic acid  (ISO)
furan  (EXP)
glyphosate  (ISO)
hydralazine  (ISO)
ifosfamide  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
Mesaconitine  (EXP)
methapyrilene  (EXP)
methidathion  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
motexafin gadolinium  (ISO)
Muraglitazar  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodimethylamine  (EXP)
N-nitrosomorpholine  (EXP)
nickel sulfate  (ISO)
nitrofen  (EXP)
paracetamol  (ISO)
pentachlorophenol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
piperonyl butoxide  (EXP)
pirinixic acid  (EXP)
potassium chromate  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
succimer  (ISO)
sunitinib  (ISO)
T-2 toxin  (ISO)
Tesaglitazar  (EXP)
testosterone enanthate  (ISO)
thimerosal  (ISO)
tolcapone  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)
zinc acetate  (ISO)
zinc atom  (ISO)
zinc dichloride  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Proapoptotic role of human growth and transformation-dependent protein in the developing rat brain after hypoxia-ischemia. Qu Y, etal., Stroke. 2009 Aug;40(8):2843-8. doi: 10.1161/STROKEAHA.109.553644. Epub 2009 Jun 11.
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:3040268   PMID:12477932   PMID:15082785   PMID:15489334   PMID:17316997   PMID:18614015   PMID:21700703   PMID:23376485  


Genomics

Comparative Map Data
Fam162a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81178,186,260 - 78,215,186 (+)NCBIGRCr8
mRatBN7.21164,680,978 - 64,709,865 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1164,680,323 - 64,711,239 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1173,505,954 - 73,535,213 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01166,168,216 - 66,197,475 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01165,199,464 - 65,228,723 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01167,618,683 - 67,646,253 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1167,618,625 - 67,646,253 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01170,706,160 - 70,733,730 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41166,518,103 - 66,546,302 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1164,149,247 - 64,177,230 (+)NCBICelera
Cytogenetic Map11q22NCBI
FAM162A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383122,384,182 - 122,412,334 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3122,384,161 - 122,412,334 (+)EnsemblGRCh38hg38GRCh38
GRCh373122,103,029 - 122,131,181 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363123,585,713 - 123,611,651 (+)NCBINCBI36Build 36hg18NCBI36
Celera3120,512,651 - 120,538,589 (+)NCBICelera
Cytogenetic Map3q21.1NCBI
HuRef3119,476,342 - 119,502,272 (+)NCBIHuRef
CHM1_13122,066,508 - 122,092,446 (+)NCBICHM1_1
T2T-CHM13v2.03125,103,734 - 125,131,889 (+)NCBIT2T-CHM13v2.0
Fam162a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391635,864,214 - 35,891,931 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1635,864,131 - 35,891,964 (-)EnsemblGRCm39 Ensembl
GRCm381636,043,844 - 36,071,561 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1636,043,761 - 36,071,594 (-)EnsemblGRCm38mm10GRCm38
MGSCv371636,043,930 - 36,071,601 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361635,963,591 - 35,991,262 (-)NCBIMGSCv36mm8
Celera1636,524,452 - 36,554,817 (-)NCBICelera
Cytogenetic Map16B3NCBI
cM Map1625.43NCBI
Fam162a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542721,667,922 - 21,694,844 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542721,668,180 - 21,695,004 (+)NCBIChiLan1.0ChiLan1.0
FAM162A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22120,329,509 - 120,357,927 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13120,334,289 - 120,362,707 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03119,474,737 - 119,500,668 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13126,380,525 - 126,406,366 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3126,380,525 - 126,406,366 (+)Ensemblpanpan1.1panPan2
FAM162A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13325,525,408 - 25,552,272 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3325,525,411 - 25,552,256 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3325,549,956 - 25,576,605 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03325,760,885 - 25,788,402 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3325,760,897 - 25,787,353 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13325,557,937 - 25,584,375 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03325,600,850 - 25,627,522 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03326,158,788 - 26,186,295 (+)NCBIUU_Cfam_GSD_1.0
Fam162a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602128,796,339 - 128,824,407 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365368,697,595 - 8,730,329 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365368,697,631 - 8,725,667 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM162A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13138,115,509 - 138,151,738 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113138,115,499 - 138,151,828 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213147,726,442 - 147,762,654 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FAM162A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12258,451,115 - 58,476,960 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2258,449,189 - 58,476,959 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041107,865,631 - 107,891,438 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam162a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624912739,917 - 762,939 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624912739,804 - 763,149 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Fam162a
155 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:213
Count of miRNA genes:168
Interacting mature miRNAs:181
Transcripts:ENSRNOT00000041844, ENSRNOT00000043230
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)113123913478851519Rat
70180BpQTLcluster10Blood pressure QTL cluster 103.19arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)113491804179918041Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)114094618882566702Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)114428575982566702Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
4889859Pur28Proteinuria QTL 2819.50.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)114545932375190161Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)115445753486241447Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)115513672982993457Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)115635142486241447Rat
631506Bp104Blood pressure QTL 1042.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)115980279482566545Rat
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)115980279482566553Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)116034659086241447Rat

Markers in Region
AW531837  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21164,708,013 - 64,708,205 (+)MAPPERmRatBN7.2
Rnor_6.01167,643,029 - 67,643,220NCBIRnor6.0
Rnor_5.01170,730,506 - 70,730,697UniSTSRnor5.0
RGSC_v3.41166,543,078 - 66,543,269UniSTSRGSC3.4
Celera1164,174,006 - 64,174,197UniSTS
RH 3.4 Map11485.5UniSTS
Cytogenetic Map11q22UniSTS
RH139177  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21164,680,152 - 64,680,677 (+)MAPPERmRatBN7.2
Rnor_6.01167,617,857 - 67,618,381NCBIRnor6.0
Rnor_5.01170,705,334 - 70,705,858UniSTSRnor5.0
RGSC_v3.41166,517,220 - 66,517,744UniSTSRGSC3.4
Celera1164,148,364 - 64,148,888UniSTS
RH 3.4 Map11485.4UniSTS
Cytogenetic Map11q22UniSTS
BI283380  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2886,746,135 - 86,746,330 (+)MAPPERmRatBN7.2
Rnor_6.0893,443,727 - 93,443,921NCBIRnor6.0
Rnor_5.0892,958,508 - 92,958,702UniSTSRnor5.0
RGSC_v3.4891,028,145 - 91,028,339UniSTSRGSC3.4
Celera886,358,798 - 86,358,992UniSTS
RH 3.4 Map8988.6UniSTS
Cytogenetic Map8q31UniSTS
Cytogenetic Map11q22UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000041844   ⟹   ENSRNOP00000040367
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1164,680,978 - 64,711,239 (+)Ensembl
Rnor_6.0 Ensembl1167,618,740 - 67,646,253 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000043230   ⟹   ENSRNOP00000040848
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1164,696,900 - 64,709,863 (+)Ensembl
Rnor_6.0 Ensembl1167,618,706 - 67,644,742 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000087054   ⟹   ENSRNOP00000070028
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1164,680,978 - 64,707,531 (+)Ensembl
Rnor_6.0 Ensembl1167,618,625 - 67,643,233 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000099640   ⟹   ENSRNOP00000096204
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1164,680,323 - 64,709,863 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000116350   ⟹   ENSRNOP00000081032
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1164,680,978 - 64,707,809 (+)Ensembl
RefSeq Acc Id: NM_001399276   ⟹   NP_001386205
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81178,186,301 - 78,215,186 (+)NCBI
mRatBN7.21164,680,978 - 64,709,865 (+)NCBI
RefSeq Acc Id: XM_063270641   ⟹   XP_063126711
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81178,186,260 - 78,215,186 (+)NCBI
RefSeq Acc Id: ENSRNOP00000040848   ⟸   ENSRNOT00000043230
RefSeq Acc Id: ENSRNOP00000070028   ⟸   ENSRNOT00000087054
RefSeq Acc Id: ENSRNOP00000040367   ⟸   ENSRNOT00000041844
RefSeq Acc Id: ENSRNOP00000081032   ⟸   ENSRNOT00000116350
RefSeq Acc Id: ENSRNOP00000096204   ⟸   ENSRNOT00000099640
RefSeq Acc Id: NP_001386205   ⟸   NM_001399276
- UniProtKB: Q4QQV3 (UniProtKB/Swiss-Prot),   A6IRE2 (UniProtKB/TrEMBL),   A0A8I6AP17 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126711   ⟸   XM_063270641
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4QQV3-F1-model_v2 AlphaFold Q4QQV3 1-155 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698192
Promoter ID:EPDNEW_R8710
Type:initiation region
Name:Fam162a_1
Description:family with sequence similarity 162, member A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01167,618,709 - 67,618,769EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1590883 AgrOrtholog
BioCyc Gene G2FUF-21211 BioCyc
Ensembl Genes ENSRNOG00000002255 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000041844.6 UniProtKB/TrEMBL
  ENSRNOT00000043230 ENTREZGENE
  ENSRNOT00000043230.6 UniProtKB/TrEMBL
  ENSRNOT00000087054.2 UniProtKB/TrEMBL
  ENSRNOT00000099640.1 UniProtKB/TrEMBL
  ENSRNOT00000116350.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7442058 IMAGE-MGC_LOAD
InterPro DUF1075 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:360721 UniProtKB/TrEMBL
MGC_CLONE MGC:116101 IMAGE-MGC_LOAD
NCBI Gene 360721 ENTREZGENE
PANTHER PROTEIN FAM162A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR13674 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF1075 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Fam162a PhenoGen
RatGTEx ENSRNOG00000002255 RatGTEx
UniProt A0A0G2JWV2_RAT UniProtKB/TrEMBL
  A0A8I5ZR27_RAT UniProtKB/TrEMBL
  A0A8I6AP17 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2QLE0_RAT UniProtKB/TrEMBL
  A6IRE2 ENTREZGENE, UniProtKB/TrEMBL
  D4ADP1_RAT UniProtKB/TrEMBL
  F162A_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-05-24 Fam162a  family with sequence similarity 162, member A  LOC60380  growth and transformation-dependent protein  Data merged from RGD:708396 1643240 APPROVED
2008-10-23 Fam162a  family with sequence similarity 162, member A  LOC360721  growth and transformation-dependent protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC360721  growth and transformation-dependent protein      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-10-12 LOC60380        Symbol and Name status set to provisional 70820 PROVISIONAL