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Gene: Ccdc50 (coiled-coil domain containing 50) Rattus norvegicus
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Symbol: Ccdc50
Name: coiled-coil domain containing 50
Description: Predicted to have ubiquitin protein ligase binding activity. Predicted to be involved in sensory perception of sound. Predicted to colocalize with the microtubule. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 44 and mantle cell lymphoma. Orthologous to human CCDC50 (coiled-coil domain containing 50); INTERACTS WITH 1,2-dimethylhydrazine; acrylamide; ammonium chloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: c3orf6; C3orf6h; coiled-coil domain-containing protein 50; protein Ymer; putative C3orf6 protein; putative C3orf6 protein homolog; putative C3orf6 protein homolog (human)
Orthologs:
Homo sapiens (human) : CCDC50 (coiled-coil domain containing 50)  HGNC  Alliance
Mus musculus (house mouse) : Ccdc50 (coiled-coil domain containing 50)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Ccdc50 (coiled-coil domain containing 50)
Pan paniscus (bonobo/pygmy chimpanzee) : CCDC50 (coiled-coil domain containing 50)
Canis lupus familiaris (dog) : CCDC50 (coiled-coil domain containing 50)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Ccdc50 (coiled-coil domain containing 50)
Sus scrofa (pig) : CCDC50 (coiled-coil domain containing 50)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01176,742,179 - 76,804,695 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1176,747,865 - 76,804,510 (-)Ensembl
Rnor_5.01183,919,936 - 83,982,339 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41175,302,647 - 75,360,549 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11175,360,235 - 75,418,138 (-)NCBI
Celera1172,269,578 - 72,326,461 (-)NCBICelera
Cytogenetic Map11q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Ccdc50
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 727841
Created: 2003-11-05
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.