Serpind1 (serpin family D member 1)

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Gene: Serpind1 (serpin family D member 1) Rattus norvegicus

Analyze

Symbol:

Serpind1

Name:

serpin family D member 1

RGD ID:

619854

Description:

Predicted to enable serine-type endopeptidase inhibitor activity. Predicted to be involved in blood coagulation. Predicted to be active in extracellular space. Human ortholog(s) of this gene implicated in heparin cofactor II deficiency. Orthologous to human SERPIND1 (serpin family D member 1); PARTICIPATES IN coagulation cascade pathway; complement system pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

HC-II; heparin cofactor 2; heparin cofactor II; leuserpin 2; leuserpin-2; protease inhibitor leuserpin-2; rls2var1; serine (or cysteine) peptidase inhibitor, clade D, member 1; serine (or cysteine) proteinase inhibitor, clade D, member 1; serpin D1; serpin peptidase inhibitor, clade D (heparin cofactor), member 1

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SERPIND1 (serpin family D member 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Serpind1 (serine (or cysteine) peptidase inhibitor, clade D, member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Serpind1 (serpin family D member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SERPIND1 (serpin family D member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SERPIND1 (serpin family D member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Serpind1 (serpin family D member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SERPIND1 (serpin family D member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SERPIND1 (serpin family D member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Serpind1 (serpin family D member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SERPIND1 (serpin family D member 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Serpind1 (serine (or cysteine) peptidase inhibitor, clade D, member 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	serpind1 (serpin peptidase inhibitor, clade D (heparin cofactor), member 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Spn43Ab	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Drosophila melanogaster (fruit fly):	Spn53F	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Drosophila melanogaster (fruit fly):	nec	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Drosophila melanogaster (fruit fly):	Spn43Ad	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Drosophila melanogaster (fruit fly):	CG43366	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Drosophila melanogaster (fruit fly):	Spn31A	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	serpind1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	11	83,664,517 - 83,675,593 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	83,664,518 - 83,675,519 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	11	92,392,269 - 92,403,338 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	85,053,419 - 85,064,488 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	84,107,025 - 84,118,094 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	87,913,814 - 87,924,880 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	87,913,806 - 87,924,816 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	11	90,969,513 - 90,980,577 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	11	85,666,714 - 85,677,716 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	11	85,707,310 - 85,718,313 (-)	NCBI
Celera	11	82,428,108 - 82,439,110 (-)	NCBI		Celera
Cytogenetic Map	11	q23	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

carotid artery thrombosis (ISO)

chromosome 22q11.2 deletion syndrome, distal (ISO)

chromosome 22q11.2 microduplication syndrome (ISO)

DiGeorge syndrome (ISO)

disease by infectious agent (ISO)

epilepsy (ISO)

genetic disease (ISO)

Hemorrhage (ISO)

hemorrhagic disease (ISO)

heparin cofactor II deficiency (ISO)

intellectual disability (ISO)

megacolon (ISO)

mesenteric vascular occlusion (ISO)

Neurodevelopmental Disorders (ISO)

primary immunodeficiency disease (ISO)

schizophrenia (ISO)

thrombophilia (ISO)

thrombosis (ISO)

velocardiofacial syndrome (ISO)

Venous Thromboembolism (ISO)

Venous Thrombosis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

3,3',4,4'-tetrachlorobiphenyl (ISO)

5-fluorouracil (ISO)

aflatoxin B1 (ISO)

ammonium chloride (EXP)

benzo[a]pyrene (EXP,ISO)

bexarotene (EXP)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (EXP)

carbon nanotube (ISO)

CGP 52608 (ISO)

clofibrate (ISO)

cobalt dichloride (EXP)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dermatan sulfate (ISO)

dibenz[a,h]anthracene (EXP)

dibenzo[a,l]pyrene (EXP)

diethyl maleate (ISO)

dioxygen (ISO)

doxorubicin (ISO)

fenthion (ISO)

flavonoids (EXP)

fluoranthene (EXP)

flutamide (EXP)

furan (EXP)

gestodene (ISO)

glyphosate (ISO)

hydroquinone O-beta-D-glucopyranoside (ISO)

methidathion (ISO)

methyltestosterone (ISO)

N-nitrosodiethylamine (EXP)

nefazodone (EXP)

nickel atom (ISO)

nickel dichloride (EXP)

nimesulide (EXP)

nitrofen (EXP)

O-methyleugenol (ISO)

p-toluidine (EXP)

paracetamol (ISO)

perfluorodecanoic acid (ISO)

perfluorododecanoic acid (ISO)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (EXP,ISO)

perfluoroundecanoic acid (ISO)

pirinixic acid (ISO)

potassium dichromate (ISO)

quercetin (ISO)

resveratrol (ISO)

sodium arsenite (ISO)

sodium dichromate (EXP)

succimer (ISO)

tauroursodeoxycholic acid (EXP)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

trichloroethene (EXP)

trimellitic anhydride (ISO)

troglitazone (ISO)

valproic acid (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

blood coagulation (IEA)

Cellular Component

extracellular space (IBA,IEA)

Molecular Function

heparin binding (IEA)

serine-type endopeptidase inhibitor activity (IBA,IEA,TAS)

Molecular Pathway Annotations Click to see Annotation Detail View

coagulation cascade pathway (IEA)

complement system pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Molecular and cellular basis for type I heparin cofactor II deficiency (heparin cofactor II Awaji).	Kondo S, etal., Blood. 1996 Feb 1;87(3):1006-12.
4.	A novel missense mutation in the human plasmin inhibitor (alpha2-antiplasmin) gene associated with a bleeding tendency.	Lind B and Thorsen S, Br J Haematol. 1999 Nov;107(2):317-22.
5.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
6.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
7.	Plasma levels of heparin cofactor II (HCII) and thrombin-HCII complex in patients with disseminated intravascular coagulation.	Noda A, etal., Clin Appl Thromb Hemost. 2002 Jul;8(3):265-71.
8.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
9.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
10.	GOA pipeline	RGD automated data pipeline
11.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
13.	Comprehensive gene review and curation	RGD comprehensive gene curation
14.	Inhibitors of fibrinolysis are elevated in atherosclerotic plaque.	Robbie LA, etal., Arterioscler Thromb Vasc Biol. 1996 Apr;16(4):539-45.
15.	Secondary thrombin-binding site, glycosaminoglycan binding domain and reactive center region of leuserpin-2 are strongly conserved in mammalian species.	Westrup D and Ragg H, Biochim Biophys Acta 1994 Jan 18;1217(1):93-6.

Additional References at PubMed

PMID:12477932	PMID:23376485	PMID:23533145	PMID:27068509

Genomics

Comparative Map Data

Serpind1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	11	83,664,517 - 83,675,593 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	83,664,518 - 83,675,519 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	11	92,392,269 - 92,403,338 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	85,053,419 - 85,064,488 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	84,107,025 - 84,118,094 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	87,913,814 - 87,924,880 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	87,913,806 - 87,924,816 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	11	90,969,513 - 90,980,577 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	11	85,666,714 - 85,677,716 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	11	85,707,310 - 85,718,313 (-)	NCBI
Celera	11	82,428,108 - 82,439,110 (-)	NCBI		Celera
Cytogenetic Map	11	q23	NCBI

SERPIND1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	20,774,113 - 20,787,720 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	20,774,113 - 20,787,720 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	22	21,128,401 - 21,142,008 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	19,458,383 - 19,472,008 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	22	19,452,940 - 19,466,562	NCBI
Celera	22	4,619,743 - 4,633,367 (+)	NCBI		Celera
Cytogenetic Map	22	q11.21	ENTREZGENE
HuRef	22	4,396,258 - 4,409,872 (+)	NCBI		HuRef
CHM1_1	22	21,128,573 - 21,142,203 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	22	21,182,821 - 21,196,428 (+)	NCBI		T2T-CHM13v2.0

Serpind1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	17,149,235 - 17,161,438 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	17,149,235 - 17,161,439 (+)	Ensembl		GRCm39 Ensembl
GRCm38	16	17,331,371 - 17,343,574 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	17,331,371 - 17,343,575 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	17,331,464 - 17,343,665 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	17,244,978 - 17,257,135 (+)	NCBI		MGSCv36	mm8
Celera	16	17,904,289 - 17,916,527 (+)	NCBI		Celera
Cytogenetic Map	16	A3	NCBI
cM Map	16	10.74	NCBI

Serpind1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955442	19,525,411 - 19,538,384 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955442	19,525,411 - 19,537,986 (-)	NCBI	ChiLan1.0	ChiLan1.0

SERPIND1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	22	33,028,430 - 33,043,063 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	22	2,997,480 - 3,011,469 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	22	19,488,733 - 19,502,380 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	19,488,733 - 19,502,380 (+)	Ensembl	panpan1.1		panPan2

SERPIND1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	30,686,074 - 30,697,437 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	30,686,663 - 30,693,848 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	30,644,440 - 30,655,802 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	32,092,332 - 32,104,026 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	32,092,321 - 32,100,437 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	30,140,268 - 30,151,742 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	29,765,126 - 29,776,487 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	30,854,649 - 30,866,010 (-)	NCBI		UU_Cfam_GSD_1.0

Serpind1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	140,443,481 - 140,455,345 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936619	2,298,893 - 2,310,716 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936619	2,298,745 - 2,310,740 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SERPIND1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	50,427,115 - 50,436,468 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	50,427,121 - 50,436,470 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	53,875,835 - 53,885,198 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SERPIND1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	4,709,896 - 4,724,620 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	19	4,715,806 - 4,726,111 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666085	2,274,595 - 2,288,806 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Serpind1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624945	915,789 - 932,515 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624945	919,639 - 932,515 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Serpind1
31 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	238
Count of miRNA genes:	168
Interacting mature miRNAs:	185
Transcripts:	ENSRNOT00000031819
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
724554	Iddm17	Insulin dependent diabetes mellitus QTL 17		0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	11	18976208	86241447	Rat
724561	Plsm4	Polydactyly-luxate syndrome (PLS) morphotypes QTL 4		0.0003	forelimb integrity trait (VT:0010562)	front foot phalanges count (CMO:0001947)	11	54457534	86241447	Rat
7411658	Foco27	Food consumption QTL 27	16.2	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	11	56351424	86241447	Rat
10058954	Gmadr7	Adrenal mass QTL 7	2.49	0.0049	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	11	60346590	86241447	Rat
634339	Niddm50	Non-insulin dependent diabetes mellitus QTL 50	3.32		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	11	66422148	86241447	Rat
1354593	Stl12	Serum triglyceride level QTL 12	3.36		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	11	66422148	86241447	Rat

Markers in Region

D11Wox17

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	83,674,893 - 83,675,061 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	87,924,191 - 87,924,358	NCBI	Rnor6.0
Rnor_5.0	11	90,979,890 - 90,980,057	UniSTS	Rnor5.0
RGSC_v3.4	11	85,677,091 - 85,677,258	UniSTS	RGSC3.4
Celera	11	82,438,485 - 82,438,652	UniSTS
Cytogenetic Map	11	q23	UniSTS

MHAa22f12.seq

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	83,670,701 - 83,670,897 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	87,919,999 - 87,920,194	NCBI	Rnor6.0
Rnor_5.0	11	90,975,698 - 90,975,893	UniSTS	Rnor5.0
RGSC_v3.4	11	85,672,899 - 85,673,094	UniSTS	RGSC3.4
Celera	11	82,434,293 - 82,434,488	UniSTS
Cytogenetic Map	11	q23	UniSTS

RH130116

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	83,664,552 - 83,664,737 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	87,913,850 - 87,914,034	NCBI	Rnor6.0
Rnor_5.0	11	90,969,549 - 90,969,733	UniSTS	Rnor5.0
RGSC_v3.4	11	85,666,750 - 85,666,934	UniSTS	RGSC3.4
Celera	11	82,428,144 - 82,428,328	UniSTS
RH 3.4 Map	11	722.22	UniSTS
Cytogenetic Map	11	q23	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High			4	4		4
Medium			36	35		35					2	1
Low		8	17	2	17	2	8	8	13	11	10	10	8
Below cutoff	3	7			2			2	24	16	18

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_024382	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006248709	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC111344	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC091145	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473999	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ210385	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ218607	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000222	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X74549	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X74550	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000031819 ⟹ ENSRNOP00000031829

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	11	83,664,518 - 83,675,519 (-)	Ensembl
Rnor_6.0 Ensembl	11	87,913,819 - 87,924,816 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000084973 ⟹ ENSRNOP00000074639

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	11	83,664,518 - 83,671,652 (-)	Ensembl
Rnor_6.0 Ensembl	11	87,913,806 - 87,921,679 (-)	Ensembl

RefSeq Acc Id:

NM_024382 ⟹ NP_077358

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	11	83,664,517 - 83,675,519 (-)	NCBI
Rnor_6.0	11	87,913,814 - 87,924,816 (-)	NCBI
Rnor_5.0	11	90,969,513 - 90,980,577 (-)	NCBI
RGSC_v3.4	11	85,666,714 - 85,677,716 (-)	RGD
Celera	11	82,428,108 - 82,439,110 (-)	RGD

Sequence:

show sequence

CTCTGGTCTCATCTCTGCCACGCCACTGCTCAGAGGCACAGAGTGAGCAACAGTTTGGTAGCGC
TGAGTCCATCCACTGGAAATTCTCCTCCTGTCTCAGCGGCTTTAGCTCTGCAGAAATGAAGCAT
CCAGCCTACACTCTCCTTCTCTCTCTCATCATGTCTATGTGTGCTGGGAGCAAAGGCCTTGCTG
AGCAGCTAACTAAGGAAAACCTGACCGTGTCCCTCCTGCCTCCTAACTTCCACAAAGAGAACAC
AGTCACCAATGACTGGATTCCAGAAGGAGAGGAAGATGACGACTACCTGGACCTGGAGAAGCTG
CTCAGTGAAGATGACGACTACATCTATGTTGTCGATGCAGTTTCCCCAACAGACTCAGAATCAA
GTGCTGGCAACATCCTGCAGCTTTTCCAAGGCAAAAGCCGGATCCAGCGCCTTAACATCCTCAA
TGCAAAGTTTGCCTTCAACCTTTACCGAGTCCTGAAGGACCAGGCTACCTCTTCTGATAACATT
TTCATAGCACCCGTTGGCATTTCCACTGCCATGGGGATGATCTCCTTAGGTTTGAGGGGAGAGA
CCCATGAGGAAGTACACTCAGTTCTACACTTCAAAGACTTTGTCAATGCTAGCAGCAAGTACGA
GGTGACAACCATTCACAACCTCTTTCGAAAGCTGACCCATCGCCTATTCAGAAGGAATTTTGGG
TACACACTTCAGTCAGTTAATGACCTTTATATTCAGAAGCAGTTTCCCATACGGGAGGACTTCA
AAGCTGCCATGAGAGAGTTTTACTTTGCTGAGGCCCAGGAGGCTGACTTCTCAGATCCTGCCTT
CATATCAAAGGCAAACAGCCACATTCTGAAGCTCACCAAGGGCCTCATAAAAGAAGCTTTGGAG
AATACAGACTCTGCTACTCAGATGATGATTCTGAACTGCATCTACTTCAAAGGAGCTTGGATGA
ATAAATTCCCAGTAGAAATGACGCATAACCACAACTTCCGGCTGAATGAGAGAGAAGTAGTAAA
AGTCTCCATGATGCAAACTAAAGGGAACTTCCTTGCGGCAAATGACCAGGAGCTAGACTGTGAC
ATTCTGCAGCTGGAGTATGTAGGGGGCATCAGCATGCTAATTGTAATTCCACGGAAGCTGTCGG
GAATGAAGACTCTTGAAGCACAGCTTACACCCCAGGTAGTGGAGAGATGGCAAAAAAGCATGAC
AAACAGAACCCGAGAGGTACTTCTGCCCAAGTTTAAGCTTGAGAAGAATTACAACCTGGTGGAG
GTCCTCAAGTCCATGGGAATCACAAAGCTCTTCAACAAGAATGGCAATATGTCAGGCATCTCAG
ACCAGAGGATCATCATTGATCTGTTCAAGCACCAGAGTACCATCACAGTGAATGAAGAGGGTAC
CCAAGCTGCAGCTGTAACTACAGTGGGGTTTATGCCGCTGTCTACCCAAGTCAGATTCACTGTT
GACCGTCCCTTCCTGTTCCTAGTGTATGAGCACCGAACCAGCTGTCTGCTGTTCATGGGAAGAG
TGGCCAACCCTGCCAAGTCTTAATGGTGCTGGTCTGGGCACCTGATGTAGTTTGGGGACACTCT
GTAATCCTGTTTTCATTCTAAGAGGACAGAGATATTTTGATATTGATAATCTATGTAGTTTGAG
ATAATAATCTAACAGTAAACAGTGTCATAAGTGCACAGATGTTAATGCAACTAATGGTCGTGCC
AGCTATTCCCTAGAGGTCCTAGACACAGACTGCCTCAGCGCCAACGCCTCTGTCACTGAGAATG
GGCAGAGTGGAGCTGACACTTTCTCCTCAGTTAGCCGTACCAGTCAAGGTGTCTCCTCAGCCAG
GCCCCTCCATATGGATGGTACTGAGGAACTCTCACCCTTCCAGGGAGGATGTCCAAGGAGCACC
ATTCTTGCCTAGTGGAAAAGAAACCTCAACATGTCTGAGACATTTGGACTTAATTCAAGGCTGA
ACCTTTTAAATTCATGTAAATATCATCTGTTCTGCTTTGTGTCAATAGGGCTACCATAGCCTAT
TCTAGAGACAAATAAACAACCATATTTACTAAGCAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006248709 ⟹ XP_006248771

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	11	83,664,517 - 83,675,593 (-)	NCBI
Rnor_6.0	11	87,913,814 - 87,924,880 (-)	NCBI
Rnor_5.0	11	90,969,513 - 90,980,577 (-)	NCBI

Sequence:

show sequence

ATTTGCTTTGGAAAACACACAACAGCTCAGCACCAAAGTTCACCCTGAAAACTGCTGGTGGCCC
CTCTGGTCTCATCTCTGCCACGCCACTGCTCAGAGGCACAGAGCGGCTTTAGCTCTGCAGAAAT
GAAGCATCCAGCCTACACTCTCCTTCTCTCTCTCATCATGTCTATGTGTGCTGGGAGCAAAGGC
CTTGCTGAGCAGCTAACTAAGGAAAACCTGACCGTGTCCCTCCTGCCTCCTAACTTCCACAAAG
AGAACACAGTCACCAATGACTGGATTCCAGAAGGAGAGGAAGATGACGACTACCTGGACCTGGA
GAAGCTGCTCAGTGAAGATGACGACTACATCTATGTTGTCGATGCAGTTTCCCCAACAGACTCA
GAATCAAGTGCTGGCAACATCCTGCAGCTTTTCCAAGGCAAAAGCCGGATCCAGCGCCTTAACA
TCCTCAATGCAAAGTTTGCCTTCAACCTTTACCGAGTCCTGAAGGACCAGGCTACCTCTTCTGA
TAACATTTTCATAGCACCCGTTGGCATTTCCACTGCCATGGGGATGATCTCCTTAGGTTTGAGG
GGAGAGACCCATGAGGAAGTACACTCAGTTCTACACTTCAAAGACTTTGTCAATGCTAGCAGCA
AGTACGAGGTGACCACCATTCACAACCTCTTTCGAAAGCTGACCCATCGCCTATTCAGAAGGAA
TTTTGGGTACACACTTCAGTCAGTTAATGACCTTTATATTCAGAAGCAGTTTCCCATACGGGAG
GACTTCAAAGCTGCCATGAGAGAGTTTTACTTTGCTGAGGCCCAGGAGGCTGACTTCTCAGATC
CTGCCTTCATATCAAAGGCAAACAGCCACATTCTGAAGCTCACCAAGGGCCTCATAAAAGAAGC
TTTGGAGAATACAGACTCTGCTACTCAGATGATGATTCTGAACTGCATCTACTTCAAAGGAGCT
TGGATGAATAAATTCCCAGTAGAAATGACGCATAACCACAACTTCCGGCTGAATGAGAGAGAAG
TAGTAAAAGTCTCCATGATGCAAACTAAAGGGAACTTCCTTGCGGCAAATGACCAGGAGCTAGA
CTGTGACATTCTGCAGCTGGAGTATGTAGGGGGCATCAGCATGCTAATTGTAATTCCACGGAAG
CTGTCGGGAATGAAGACTCTTGAAGCACAGCTTACACCCCAGGTAGTGGAGAGATGGCAAAAAA
GCATGACAAACAGAACCCGAGAGGTACTTCTGCCCAAGTTTAAGCTTGAGAAGAATTACAACCT
GGTGGAGGTCCTCAAGTCCATGGGAATCACAAAGCTCTTCAACAAGAATGGCAATATGTCAGGC
ATCTCAGACCAGAGGATCATCATTGATCTGTTCAAGCACCAGAGTACCATCACAGTGAATGAAG
AGGGTACCCAAGCTGCAGCTGTAACTACAGTGGGGTTTATGCCGCTGTCTACCCAAGTCAGATT
CACTGTTGACCGTCCCTTCCTGTTCCTAGTGTATGAGCACCGAACCAGCTGTCTGCTGTTCATG
GGAAGAGTGGCCAACCCTGCCAAGTCTTAATGGTGCTGGTCTGGGCACCTGATGTAGTTTGGGG
ACACTCTGTAATCCTGTTTTCATTCTAAGAGGACAGAGATATTTTGATATTGATAATCTATGTA
GTTTGAGATAATAATCTAACAGTAAACAGTGTCATAAGTGCACAGATGTTAATGCAACTAATGG
TCGTGCCAGCTATTCCCTAGAGGTCCTAGACACAGACTGCCTCAGCGCCAACGCCTCTGTCACT
GAGAATGGGCAGAGTGGAGCTGACACTTTCTCCTCAGTTAGCCGTACCAGTCAAGGTGTCTCCT
CAGCCAGGCCCCTCCATATGGATGGTACTGAGGAACTCTCACCCTTCCAGGGAGGATGTCCAAG
GAGCACCATTCTTGCCTAGTGGAAAAGAAACCTCAACATGTCTGAGACATTTGGACTTAATTCA
AGGCTGAACCTTTTAAATTCATGTAAATATCATCTGTTCTGCTTTGTGTCAATAGGGCTACCAT
AGCCTATTCTAGAGACAAATAAACAACCATATTTACTAAGCA

hide sequence

Protein Sequences


Protein RefSeqs	NP_077358	(Get FASTA)	NCBI Sequence Viewer
	XP_006248771	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH91145	(Get FASTA)	NCBI Sequence Viewer
	CAA52643	(Get FASTA)	NCBI Sequence Viewer
	CAA52644	(Get FASTA)	NCBI Sequence Viewer
	EDL77886	(Get FASTA)	NCBI Sequence Viewer
	EDL77887	(Get FASTA)	NCBI Sequence Viewer
	EDL77888	(Get FASTA)	NCBI Sequence Viewer
	Q64268	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_077358 ⟸ NM_024382
- Peptide Label:	precursor
- UniProtKB:	Q5BKA6 (UniProtKB/Swiss-Prot), Q64268 (UniProtKB/Swiss-Prot), A6JSM3 (UniProtKB/TrEMBL), A0A0G2K8K3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKHPAYTLLLSLIMSMCAGSKGLAEQLTKENLTVSLLPPNFHKENTVTNDWIPEGEEDDDYLDL EKLLSEDDDYIYVVDAVSPTDSESSAGNILQLFQGKSRIQRLNILNAKFAFNLYRVLKDQATSS DNIFIAPVGISTAMGMISLGLRGETHEEVHSVLHFKDFVNASSKYEVTTIHNLFRKLTHRLFRR NFGYTLQSVNDLYIQKQFPIREDFKAAMREFYFAEAQEADFSDPAFISKANSHILKLTKGLIKE ALENTDSATQMMILNCIYFKGAWMNKFPVEMTHNHNFRLNEREVVKVSMMQTKGNFLAANDQEL DCDILQLEYVGGISMLIVIPRKLSGMKTLEAQLTPQVVERWQKSMTNRTREVLLPKFKLEKNYN LVEVLKSMGITKLFNKNGNMSGISDQRIIIDLFKHQSTITVNEEGTQAAAVTTVGFMPLSTQVR FTVDRPFLFLVYEHRTSCLLFMGRVANPAKS hide sequence

RefSeq Acc Id:	XP_006248771 ⟸ XM_006248709
- Peptide Label:	isoform X1
- UniProtKB:	Q5BKA6 (UniProtKB/Swiss-Prot), Q64268 (UniProtKB/Swiss-Prot), A6JSM3 (UniProtKB/TrEMBL), A0A0G2K8K3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKHPAYTLLLSLIMSMCAGSKGLAEQLTKENLTVSLLPPNFHKENTVTNDWIPEGEEDDDYLDL EKLLSEDDDYIYVVDAVSPTDSESSAGNILQLFQGKSRIQRLNILNAKFAFNLYRVLKDQATSS DNIFIAPVGISTAMGMISLGLRGETHEEVHSVLHFKDFVNASSKYEVTTIHNLFRKLTHRLFRR NFGYTLQSVNDLYIQKQFPIREDFKAAMREFYFAEAQEADFSDPAFISKANSHILKLTKGLIKE ALENTDSATQMMILNCIYFKGAWMNKFPVEMTHNHNFRLNEREVVKVSMMQTKGNFLAANDQEL DCDILQLEYVGGISMLIVIPRKLSGMKTLEAQLTPQVVERWQKSMTNRTREVLLPKFKLEKNYN LVEVLKSMGITKLFNKNGNMSGISDQRIIIDLFKHQSTITVNEEGTQAAAVTTVGFMPLSTQVR FTVDRPFLFLVYEHRTSCLLFMGRVANPAKS hide sequence

RefSeq Acc Id:

ENSRNOP00000031829 ⟸ ENSRNOT00000031819

RefSeq Acc Id:

ENSRNOP00000074639 ⟸ ENSRNOT00000084973

Protein Domains

SERPIN

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q64268-F1-model_v2	AlphaFold	Q64268	1-479	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:619854	AgrOrtholog
BioCyc Gene	G2FUF-20585	BioCyc
Ensembl Genes	ENSRNOG00000001865	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000031829	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOP00000074639	ENTREZGENE
	ENSRNOP00000074639.2	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000031819	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOT00000084973	ENTREZGENE
	ENSRNOT00000084973.2	UniProtKB/TrEMBL
Gene3D-CATH	2.30.39.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	3.30.497.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7372906	IMAGE-MGC_LOAD
InterPro	HCII	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Serpin_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Serpin_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Serpin_fam	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Serpin_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Serpin_sf_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Serpin_sf_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:79224	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:108674	IMAGE-MGC_LOAD
NCBI Gene	79224	ENTREZGENE
PANTHER	HEPARIN COFACTOR 2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR11461	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Serpin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Serpind1	PhenoGen
PRINTS	LEUSERPINII	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	SERPIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	SERPIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF56574	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2K8K3	ENTREZGENE, UniProtKB/TrEMBL
	A6JSM3	ENTREZGENE, UniProtKB/TrEMBL
	HEP2_RAT	UniProtKB/Swiss-Prot
	Q5BKA6	ENTREZGENE
	Q64268	ENTREZGENE
UniProt Secondary	Q5BKA6	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-04-13	Serpind1	serpin family D member 1	Serpind1	serpin peptidase inhibitor, clade D (heparin cofactor), member 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2011-01-19	Serpind1	serpin peptidase inhibitor, clade D (heparin cofactor), member 1	Serpind1	serine (or cysteine) peptidase inhibitor, clade D, member 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Serpind1	serine (or cysteine) peptidase inhibitor, clade D, member 1		serine (or cysteine) proteinase inhibitor, clade D, member 1	Name updated	1299863	APPROVED
2004-12-14	Serpind1	serine (or cysteine) proteinase inhibitor, clade D, member 1		leuserpin-2	Name updated	1299863	APPROVED
2002-08-07	Serpind1	leuserpin-2			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
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InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)