Casp6-ps1 (caspase 6, pseudogene 1) - Rat Genome Database

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Gene: Casp6-ps1 (caspase 6, pseudogene 1) Rattus norvegicus
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Symbol: Casp6-ps1
Name: caspase 6, pseudogene 1
RGD ID: 1592279
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC689483; similar to caspase 6
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81178,397,335 - 78,402,847 (+)NCBIGRCr8
mRatBN7.21164,892,045 - 64,897,556 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.01168,095,156 - 68,100,351 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01171,184,627 - 71,189,419 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41166,726,092 - 66,731,408 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1164,354,422 - 64,360,100 (+)NCBICelera
Cytogenetic Map11q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




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Variants in Casp6-ps1
126 total Variants

1 to 10 of 24 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)115980279482566553Rat
70180BpQTLcluster10Blood pressure QTL cluster 103.19arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)113491804179918041Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
4889859Pur28Proteinuria QTL 2819.50.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)114545932375190161Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
10755497Bp388Blood pressure QTL 3882.76arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)111945620576331918Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)116034659086241447Rat

1 to 10 of 24 rows





GenBank Nucleotide JAXUCZ010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-21205 BioCyc
NCBI Gene 689483 ENTREZGENE
PhenoGen Casp6-ps1 PhenoGen


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-03-24 Casp6-ps1  caspase 6, pseudogene 1  LOC689483  similar to caspase 6  Name and Symbol changed 629549 APPROVED
2006-11-20 LOC689483  similar to caspase 6      Symbol and Name status set to provisional 70820 PROVISIONAL