Gramd1c (GRAM domain containing 1C) - Rat Genome Database

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Gene: Gramd1c (GRAM domain containing 1C) Rattus norvegicus
Analyze
Symbol: Gramd1c
Name: GRAM domain containing 1C
RGD ID: 1305433
Description: Predicted to enable cholesterol binding activity and cholesterol transfer activity. Predicted to be involved in cellular response to cholesterol and intracellular sterol transport. Predicted to be active in endoplasmic reticulum membrane; endoplasmic reticulum-plasma membrane contact site; and plasma membrane. Orthologous to human GRAMD1C (GRAM domain containing 1C); INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-Tetrachlorodibenzofuran; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: GRAM domain-containing protein 1C; LOC360717; RGD1305433; similar to RIKEN cDNA 4921521N14
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21156,633,229 - 56,718,570 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1156,633,227 - 56,718,570 (+)Ensembl
Rnor_6.01161,609,370 - 61,659,355 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.01162,580,983 - 62,634,961 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1161,605,937 - 62,634,803 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01165,711,729 - 65,765,391 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01160,784,803 - 60,791,455 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41158,201,167 - 58,283,274 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11158,254,734 - 58,341,104 (+)NCBI
Celera1156,188,270 - 56,269,944 (+)NCBICelera
Cytogenetic Map11q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:30220461  


Genomics

Comparative Map Data
Gramd1c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21156,633,229 - 56,718,570 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1156,633,227 - 56,718,570 (+)Ensembl
Rnor_6.01161,609,370 - 61,659,355 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.01162,580,983 - 62,634,961 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1161,605,937 - 62,634,803 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01165,711,729 - 65,765,391 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01160,784,803 - 60,791,455 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41158,201,167 - 58,283,274 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11158,254,734 - 58,341,104 (+)NCBI
Celera1156,188,270 - 56,269,944 (+)NCBICelera
Cytogenetic Map11q21NCBI
GRAMD1C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383113,828,192 - 113,947,174 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl3113,828,182 - 113,947,174 (+)EnsemblGRCh38hg38GRCh38
GRCh373113,557,635 - 113,666,021 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363115,040,367 - 115,148,711 (+)NCBINCBI36hg18NCBI36
Celera3111,966,333 - 112,074,472 (+)NCBI
Cytogenetic Map3q13.31NCBI
HuRef3110,932,234 - 111,040,020 (+)NCBIHuRef
CHM1_13113,520,993 - 113,629,397 (+)NCBICHM1_1
T2T-CHM13v2.03116,559,970 - 116,668,438 (+)NCBI
Gramd1c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391643,800,713 - 43,883,822 (-)NCBIGRCm39mm39
GRCm39 Ensembl1643,800,713 - 43,883,708 (-)Ensembl
GRCm381643,980,350 - 44,065,380 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1643,980,350 - 44,063,345 (-)EnsemblGRCm38mm10GRCm38
MGSCv371643,980,463 - 44,028,058 (-)NCBIGRCm37mm9NCBIm37
MGSCv361643,899,687 - 43,935,691 (-)NCBImm8
Celera1644,335,513 - 44,383,274 (-)NCBICelera
Cytogenetic Map16B4NCBI
Gramd1c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542713,957,834 - 14,044,749 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542713,957,746 - 14,044,473 (+)NCBIChiLan1.0ChiLan1.0
GRAMD1C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13117,898,371 - 118,006,502 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3117,898,371 - 118,006,502 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03110,977,513 - 111,085,458 (+)NCBIMhudiblu_PPA_v0panPan3
GRAMD1C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13318,132,860 - 18,214,363 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3318,132,862 - 18,212,894 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3318,234,551 - 18,322,629 (+)NCBI
ROS_Cfam_1.03318,372,480 - 18,460,171 (+)NCBI
ROS_Cfam_1.0 Ensembl3318,372,503 - 18,460,152 (+)Ensembl
UMICH_Zoey_3.13318,176,131 - 18,263,545 (+)NCBI
UNSW_CanFamBas_1.03318,227,495 - 18,315,338 (+)NCBI
UU_Cfam_GSD_1.03318,772,807 - 18,860,172 (+)NCBI
Gramd1c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602136,087,982 - 136,172,184 (-)NCBI
SpeTri2.0NW_0049365361,349,832 - 1,433,910 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GRAMD1C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13145,997,742 - 146,105,681 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113145,997,738 - 146,105,785 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213155,584,628 - 155,691,841 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GRAMD1C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12266,917,212 - 67,021,575 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2266,918,899 - 67,021,409 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604199,447,420 - 99,551,307 (+)NCBIVero_WHO_p1.0
Gramd1c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473134,571,894 - 34,608,859 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462473134,571,191 - 34,680,754 (-)NCBIHetGla_female_1.0hetGla2


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)112952841860324829Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)113123913478851519Rat
70180BpQTLcluster10Blood pressure QTL cluster 103.19arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)113491804179918041Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)114094618882566702Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)114428575982566702Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
4889859Pur28Proteinuria QTL 2819.50.001total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)114545932375190161Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)115445753486241447Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)115513672982993457Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)115635142486241447Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:5
Count of miRNA genes:4
Interacting mature miRNAs:5
Transcripts:ENSRNOT00000002722
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 17 17 17 1 1 9 1
Low 3 26 33 24 17 24 7 10 74 35 32 11 7
Below cutoff 17 7 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000071065   ⟹   ENSRNOP00000066843
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1156,635,036 - 56,718,566 (+)Ensembl
Rnor_6.0 Ensembl1162,584,959 - 62,634,802 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000082533   ⟹   ENSRNOP00000073023
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1156,681,830 - 56,718,570 (+)Ensembl
Rnor_6.0 Ensembl1161,609,389 - 61,661,057 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000088880   ⟹   ENSRNOP00000069253
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1156,635,082 - 56,716,871 (+)Ensembl
Rnor_6.0 Ensembl1161,609,370 - 61,659,355 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000093148
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1162,581,121 - 62,634,803 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000093242   ⟹   ENSRNOP00000076277
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1156,633,227 - 56,718,566 (+)Ensembl
Rnor_6.0 Ensembl1161,606,006 - 61,652,180 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000093455   ⟹   ENSRNOP00000076134
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1156,633,227 - 56,718,566 (+)Ensembl
Rnor_6.0 Ensembl1161,605,937 - 61,660,198 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000093588
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1156,635,036 - 56,718,566 (+)Ensembl
Rnor_6.0 Ensembl1161,609,388 - 61,655,333 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000093600
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1161,655,666 - 61,661,054 (+)Ensembl
RefSeq Acc Id: NM_001191826   ⟹   NP_001178755
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21156,635,082 - 56,716,871 (+)NCBI
Rnor_6.01161,609,370 - 61,659,355 (+)NCBI
Rnor_5.01165,711,729 - 65,765,391 (+)NCBI
Celera1156,188,270 - 56,269,944 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039088482   ⟹   XP_038944410
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21156,633,229 - 56,718,570 (+)NCBI
RefSeq Acc Id: XM_039088483   ⟹   XP_038944411
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21156,635,042 - 56,718,570 (+)NCBI
RefSeq Acc Id: XM_039088484   ⟹   XP_038944412
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21156,633,230 - 56,718,570 (+)NCBI
RefSeq Acc Id: XM_039088485   ⟹   XP_038944413
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21156,633,229 - 56,718,570 (+)NCBI
RefSeq Acc Id: XM_039088486   ⟹   XP_038944414
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21156,670,515 - 56,718,570 (+)NCBI
RefSeq Acc Id: XM_039088487   ⟹   XP_038944415
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21156,669,546 - 56,718,570 (+)NCBI
RefSeq Acc Id: XM_039088489   ⟹   XP_038944417
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21156,633,230 - 56,709,783 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001178755   ⟸   NM_001191826
- Sequence:
RefSeq Acc Id: ENSRNOP00000073023   ⟸   ENSRNOT00000082533
RefSeq Acc Id: ENSRNOP00000066843   ⟸   ENSRNOT00000071065
RefSeq Acc Id: ENSRNOP00000076134   ⟸   ENSRNOT00000093455
RefSeq Acc Id: ENSRNOP00000076277   ⟸   ENSRNOT00000093242
RefSeq Acc Id: ENSRNOP00000069253   ⟸   ENSRNOT00000088880
RefSeq Acc Id: XP_038944410   ⟸   XM_039088482
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038944413   ⟸   XM_039088485
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038944412   ⟸   XM_039088484
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038944417   ⟸   XM_039088489
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038944411   ⟸   XM_039088483
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038944415   ⟸   XM_039088487
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038944414   ⟸   XM_039088486
- Peptide Label: isoform X5
Protein Domains
VASt

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A135-F1-model_v2 AlphaFold D4A135 1-488 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698160
Promoter ID:EPDNEW_R8682
Type:multiple initiation site
Name:Gramd1c_1
Description:GRAM domain containing 1C
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01162,581,079 - 62,581,139EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305433 AgrOrtholog
BioCyc Gene G2FUF-21336 BioCyc
Ensembl Genes ENSRNOG00000053406 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000066843.3 UniProtKB/TrEMBL
  ENSRNOP00000069253.2 UniProtKB/TrEMBL
  ENSRNOP00000073023 ENTREZGENE
  ENSRNOP00000073023.2 UniProtKB/TrEMBL
  ENSRNOP00000076134 ENTREZGENE
  ENSRNOP00000076134.2 UniProtKB/TrEMBL
  ENSRNOP00000076277 ENTREZGENE
  ENSRNOP00000076277.2 UniProtKB/TrEMBL
  ENSRNOP00000090140 ENTREZGENE
  ENSRNOP00000090140.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000071065.3 UniProtKB/TrEMBL
  ENSRNOT00000082533 ENTREZGENE
  ENSRNOT00000082533.2 UniProtKB/TrEMBL
  ENSRNOT00000088880.2 UniProtKB/TrEMBL
  ENSRNOT00000093242 ENTREZGENE
  ENSRNOT00000093242.2 UniProtKB/TrEMBL
  ENSRNOT00000093455 ENTREZGENE
  ENSRNOT00000093455.2 UniProtKB/TrEMBL
  ENSRNOT00000093588 ENTREZGENE
  ENSRNOT00000093588.2 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
InterPro DUF4782 UniProtKB/TrEMBL
  GRAM UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
NCBI Gene 360717 ENTREZGENE
Pfam DUF4782 UniProtKB/TrEMBL
  GRAM UniProtKB/TrEMBL
PhenoGen Gramd1c PhenoGen
PROSITE VAST UniProtKB/TrEMBL
SMART GRAM UniProtKB/TrEMBL
UniProt A0A0G2K4F5_RAT UniProtKB/TrEMBL
  A0A1W2Q652_RAT UniProtKB/TrEMBL
  A0A1W2Q6J4_RAT UniProtKB/TrEMBL
  A0A8I6AME7_RAT UniProtKB/TrEMBL
  D4A135_RAT UniProtKB/TrEMBL
  M0RBB3_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Gramd1c  GRAM domain containing 1C   Gramd1c_predicted  GRAM domain containing 1C (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Gramd1c_predicted  GRAM domain containing 1C (predicted)  RGD1305433_predicted  similar to RIKEN cDNA 4921521N14 (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1305433_predicted  similar to RIKEN cDNA 4921521N14 (predicted)  LOC360717_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC360717_predicted  similar to RIKEN cDNA 4921521N14 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL