Zfp148 (zinc finger protein 148) - Rat Genome Database

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Gene: Zfp148 (zinc finger protein 148) Rattus norvegicus
Analyze
Symbol: Zfp148
Name: zinc finger protein 148
RGD ID: 62063
Description: Enables transcription cis-regulatory region binding activity. Involved in negative regulation of transcription by RNA polymerase II and protein-containing complex assembly. Predicted to be located in Golgi apparatus and nucleoplasm. Orthologous to human ZNF148 (zinc finger protein 148); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: transcription factor ZBP-89; Zbp-89; zinc finger DNA-binding protein 89; Znf148
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81180,780,865 - 80,890,877 (-)NCBIGRCr8
mRatBN7.21167,276,455 - 67,385,803 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1167,281,707 - 67,385,772 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1176,115,450 - 76,222,690 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01168,777,301 - 68,884,541 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01167,807,855 - 67,911,921 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01170,509,909 - 70,618,422 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1170,514,750 - 70,618,347 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01173,597,695 - 73,704,353 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41169,103,680 - 69,207,360 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11169,161,268 - 69,264,950 (-)NCBI
Celera1166,730,467 - 66,835,205 (-)NCBICelera
Cytogenetic Map11q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
allethrin  (EXP)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
cisplatin  (ISO)
cocaine  (EXP)
copper(II) sulfate  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
cyhalothrin  (EXP)
cypermethrin  (EXP)
dexamethasone  (ISO)
disodium selenite  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
entinostat  (ISO)
ethanol  (ISO)
fenthion  (ISO)
fenvalerate  (EXP)
finasteride  (EXP)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
gentamycin  (EXP)
hydrogen peroxide  (ISO)
indometacin  (ISO)
linsidomine  (EXP)
methimazole  (EXP)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
nickel atom  (ISO)
ochratoxin A  (ISO)
oxaliplatin  (EXP)
paracetamol  (EXP,ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
PhIP  (EXP)
pirinixic acid  (ISO)
propiconazole  (ISO)
pyrethrins  (EXP)
resveratrol  (EXP,ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
sulfadimethoxine  (EXP)
sulindac  (EXP)
tamibarotene  (ISO)
testosterone enanthate  (ISO)
topotecan  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
Golgi apparatus  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IEA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. ZBP-89, a Kruppel-like zinc finger protein, inhibits epidermal growth factor induction of the gastrin promoter. Merchant JL, etal., Mol Cell Biol 1996 Dec;16(12):6644-53.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
10. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
Additional References at PubMed
PMID:9030551   PMID:12524542   PMID:12771217   PMID:14654702   PMID:17560543   PMID:22926577  


Genomics

Comparative Map Data
Zfp148
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81180,780,865 - 80,890,877 (-)NCBIGRCr8
mRatBN7.21167,276,455 - 67,385,803 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1167,281,707 - 67,385,772 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1176,115,450 - 76,222,690 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01168,777,301 - 68,884,541 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01167,807,855 - 67,911,921 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01170,509,909 - 70,618,422 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1170,514,750 - 70,618,347 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01173,597,695 - 73,704,353 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41169,103,680 - 69,207,360 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11169,161,268 - 69,264,950 (-)NCBI
Celera1166,730,467 - 66,835,205 (-)NCBICelera
Cytogenetic Map11q22NCBI
ZNF148
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383125,225,669 - 125,375,354 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3125,225,669 - 125,375,325 (-)EnsemblGRCh38hg38GRCh38
GRCh373124,944,513 - 125,094,198 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363126,427,203 - 126,576,888 (-)NCBINCBI36Build 36hg18NCBI36
Build 343126,433,610 - 126,576,785NCBI
Celera3123,353,697 - 123,503,401 (-)NCBICelera
Cytogenetic Map3q21.2NCBI
HuRef3122,320,900 - 122,470,192 (-)NCBIHuRef
CHM1_13124,907,515 - 125,057,227 (-)NCBICHM1_1
T2T-CHM13v2.03127,952,391 - 128,102,007 (-)NCBIT2T-CHM13v2.0
Zfp148
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391633,201,145 - 33,324,273 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1633,201,206 - 33,324,733 (+)EnsemblGRCm39 Ensembl
GRCm381633,380,775 - 33,503,903 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1633,380,836 - 33,504,363 (+)EnsemblGRCm38mm10GRCm38
MGSCv371633,380,861 - 33,503,989 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361633,300,583 - 33,420,121 (+)NCBIMGSCv36mm8
Celera1633,864,197 - 33,987,285 (+)NCBICelera
Cytogenetic Map16B3NCBI
cM Map1623.93NCBI
Znf148
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542724,294,926 - 24,377,217 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542724,294,926 - 24,430,697 (-)NCBIChiLan1.0ChiLan1.0
ZNF148
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22123,222,162 - 123,371,893 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13123,226,939 - 123,381,474 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03122,357,670 - 122,507,142 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13129,223,025 - 129,372,404 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3129,229,690 - 129,320,554 (-)Ensemblpanpan1.1panPan2
ZNF148
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13328,229,270 - 28,347,939 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3328,233,728 - 28,348,154 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3328,251,750 - 28,370,922 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03328,461,693 - 28,581,111 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3328,466,608 - 28,581,039 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13328,259,976 - 28,379,017 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03328,304,821 - 28,423,968 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03328,923,658 - 29,043,333 (-)NCBIUU_Cfam_GSD_1.0
Znf148
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602126,098,514 - 126,181,308 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367256,962 - 83,034 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367256,968 - 89,762 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF148
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13134,969,729 - 135,089,151 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113134,968,774 - 135,093,828 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213144,512,438 - 144,621,137 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF148
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12255,467,453 - 55,609,050 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041110,703,025 - 110,849,458 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf148
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247311,278,242 - 1,354,063 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247311,271,478 - 1,410,047 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zfp148
424 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:80
Count of miRNA genes:73
Interacting mature miRNAs:76
Transcripts:ENSRNOT00000002435
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)115980279482566553Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
4889859Pur28Proteinuria QTL 2819.50.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)114545932375190161Rat
1549848Bvd6Brain ventricular dilatation QTL 63.10.0001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)116611332182169223Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)116034659086241447Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)113123913478851519Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)114428575982566702Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)115445753486241447Rat
631506Bp104Blood pressure QTL 1042.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)115980279482566545Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
70180BpQTLcluster10Blood pressure QTL cluster 103.19arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)113491804179918041Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
634339Niddm50Non-insulin dependent diabetes mellitus QTL 503.32blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)116642214886241447Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)114094618882566702Rat
1354593Stl12Serum triglyceride level QTL 123.36blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)116642214886241447Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)115513672982993457Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)115635142486241447Rat

Markers in Region
Zfp148  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21167,283,468 - 67,283,673 (+)MAPPERmRatBN7.2
Rnor_6.01170,516,102 - 70,516,306NCBIRnor6.0
Rnor_5.01173,603,224 - 73,603,428UniSTSRnor5.0
RGSC_v3.41169,104,833 - 69,105,037UniSTSRGSC3.4
Celera1166,732,229 - 66,732,433UniSTS
Cytogenetic Map11q22UniSTS
UniSTS:144823  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21653,055,548 - 53,056,319 (-)MAPPERmRatBN7.2
mRatBN7.21167,283,059 - 67,283,839 (+)MAPPERmRatBN7.2
Rnor_6.01170,515,693 - 70,516,472NCBIRnor6.0
Rnor_6.01656,536,808 - 56,537,578NCBIRnor6.0
Rnor_5.01656,237,674 - 56,238,444UniSTSRnor5.0
Rnor_5.01173,602,815 - 73,603,594UniSTSRnor5.0
RGSC_v3.41169,104,424 - 69,105,203UniSTSRGSC3.4
RGSC_v3.41656,616,988 - 56,617,758UniSTSRGSC3.4
Celera1650,940,124 - 50,940,894UniSTS
Celera1166,731,820 - 66,732,599UniSTS
Cytogenetic Map11q22UniSTS
Cytogenetic Map16q12.1UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000002435   ⟹   ENSRNOP00000002435
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1167,282,308 - 67,385,725 (-)Ensembl
Rnor_6.0 Ensembl1170,514,949 - 70,618,347 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000086955   ⟹   ENSRNOP00000071067
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1167,281,707 - 67,385,772 (-)Ensembl
Rnor_6.0 Ensembl1170,514,750 - 70,585,053 (-)Ensembl
RefSeq Acc Id: NM_031615   ⟹   NP_113803
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81180,786,818 - 80,890,877 (-)NCBI
mRatBN7.21167,281,707 - 67,385,772 (-)NCBI
Rnor_6.01170,514,340 - 70,618,403 (-)NCBI
Rnor_5.01173,597,695 - 73,704,353 (-)NCBI
RGSC_v3.41169,103,680 - 69,207,360 (-)RGD
Celera1166,730,467 - 66,835,205 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006248435   ⟹   XP_006248497
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81180,780,865 - 80,890,806 (-)NCBI
mRatBN7.21167,276,455 - 67,385,802 (-)NCBI
Rnor_6.01170,509,909 - 70,618,422 (-)NCBI
Rnor_5.01173,597,695 - 73,704,353 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039088601   ⟹   XP_038944529
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81180,780,865 - 80,890,807 (-)NCBI
mRatBN7.21167,276,455 - 67,385,802 (-)NCBI
RefSeq Acc Id: XM_039088602   ⟹   XP_038944530
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81180,780,865 - 80,890,585 (-)NCBI
mRatBN7.21167,276,455 - 67,385,436 (-)NCBI
RefSeq Acc Id: XM_039088603   ⟹   XP_038944531
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81180,780,865 - 80,890,331 (-)NCBI
mRatBN7.21167,276,455 - 67,385,326 (-)NCBI
RefSeq Acc Id: XM_039088604   ⟹   XP_038944532
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81180,780,865 - 80,890,806 (-)NCBI
mRatBN7.21167,282,316 - 67,385,803 (-)NCBI
RefSeq Acc Id: XM_063270736   ⟹   XP_063126806
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81180,780,865 - 80,876,955 (-)NCBI
RefSeq Acc Id: XM_063270737   ⟹   XP_063126807
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81180,780,865 - 80,890,582 (-)NCBI
RefSeq Acc Id: XM_063270738   ⟹   XP_063126808
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81180,780,865 - 80,890,331 (-)NCBI
RefSeq Acc Id: NP_113803   ⟸   NM_031615
- UniProtKB: Q62806 (UniProtKB/Swiss-Prot),   A6IRL4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006248497   ⟸   XM_006248435
- Peptide Label: isoform X1
- UniProtKB: A0A8L2R3F5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000002435   ⟸   ENSRNOT00000002435
Ensembl Acc Id: ENSRNOP00000071067   ⟸   ENSRNOT00000086955
RefSeq Acc Id: XP_038944529   ⟸   XM_039088601
- Peptide Label: isoform X1
- UniProtKB: A0A8L2R3F5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944530   ⟸   XM_039088602
- Peptide Label: isoform X1
- UniProtKB: A0A8L2R3F5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944531   ⟸   XM_039088603
- Peptide Label: isoform X1
- UniProtKB: A0A8L2R3F5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944532   ⟸   XM_039088604
- Peptide Label: isoform X3
- UniProtKB: A0A8L2Q044 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126807   ⟸   XM_063270737
- Peptide Label: isoform X2
- UniProtKB: Q62806 (UniProtKB/Swiss-Prot),   A6IRL4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126808   ⟸   XM_063270738
- Peptide Label: isoform X2
- UniProtKB: Q62806 (UniProtKB/Swiss-Prot),   A6IRL4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126806   ⟸   XM_063270736
- Peptide Label: isoform X2
- UniProtKB: Q62806 (UniProtKB/Swiss-Prot),   A6IRL4 (UniProtKB/TrEMBL)
Protein Domains
C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q62806-F1-model_v2 AlphaFold Q62806 1-794 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698200
Promoter ID:EPDNEW_R8725
Type:single initiation site
Name:Zfp148_1
Description:zinc finger protein 148
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01170,618,331 - 70,618,391EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:62063 AgrOrtholog
BioCyc Gene G2FUF-21129 BioCyc
Ensembl Genes ENSRNOG00000001789 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000002435.5 UniProtKB/TrEMBL
  ENSRNOT00000086955.2 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7103428 IMAGE-MGC_LOAD
InterPro Znf_C2H2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:58820 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:91629 IMAGE-MGC_LOAD
NCBI Gene 58820 ENTREZGENE
PANTHER KRUEPPEL-LIKE FACTOR 15 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KRUEPPEL-LIKE TRANSCRIPTION FACTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Zfp148 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000001789 RatGTEx
SMART ZnF_C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR TC219031
UniProt A0A8L2Q044 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2R3F5 ENTREZGENE, UniProtKB/TrEMBL
  A6IRL4 ENTREZGENE, UniProtKB/TrEMBL
  Q62806 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Zfp148  zinc finger protein 148  Znf148    Symbol updated 1299863 APPROVED
2002-06-10 Znf148  zinc finger protein 148      Name updated 70584 APPROVED
2001-10-24 Znf148  zinc finger protein 148      Symbol updated to reflect Human and Mouse nomenclature 68913 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression mRNA ubiquitously expressed in adult tissues 61784
gene_homology aa sequence 89% identical with human ht(beta) 61784
gene_physical_interaction binds to the epidermal growth factor (EGF) response element of the gastrin gene 61784
gene_product member of the C2H2 subclass of the zinc finger family of transcription factors, characterized by the Kruppel motif 61784
gene_protein protein masses 89 kDa 61784