Parp9 (poly (ADP-ribose) polymerase family, member 9) - Rat Genome Database

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Gene: Parp9 (poly (ADP-ribose) polymerase family, member 9) Rattus norvegicus
Analyze
Symbol: Parp9
Name: poly (ADP-ribose) polymerase family, member 9
RGD ID: 1307534
Description: Predicted to enable several functions, including ADP-D-ribose binding activity; STAT family protein binding activity; and pentosyltransferase activity. Predicted to be involved in several processes, including DNA damage checkpoint signaling; regulation of defense response; and regulation of macromolecule metabolic process. Predicted to be located in several cellular components, including mitochondrion; nucleoplasm; and site of DNA damage. Predicted to be part of protein-containing complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human PARP9 (poly(ADP-ribose) polymerase family member 9); PARTICIPATES IN ADP-ribosylation pathway, mono and poly-ribosylation; INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC303905; MGC156739; poly [ADP-ribose] polymerase 9; RGD1307534; similar to B aggressive lymphoma
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81178,286,282 - 78,320,409 (-)NCBIGRCr8
mRatBN7.21164,780,977 - 64,814,995 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1164,780,981 - 64,815,455 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1173,606,279 - 73,638,748 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01166,268,543 - 66,301,015 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01165,299,789 - 65,332,261 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01167,724,071 - 67,758,027 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1167,724,076 - 67,756,799 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01170,812,294 - 70,846,215 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41166,615,587 - 66,648,294 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11166,673,175 - 66,702,103 (-)NCBI
Celera1164,246,917 - 64,279,634 (-)NCBICelera
Cytogenetic Map11q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dinitrotoluene  (EXP)
3-chloropropane-1,2-diol  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
acetamide  (EXP)
all-trans-retinoic acid  (ISO)
aluminium atom  (ISO)
aluminium(0)  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol A diglycidyl ether  (ISO)
bisphenol AF  (ISO)
butanal  (ISO)
cadmium dichloride  (EXP)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chromium(6+)  (ISO)
clofibric acid  (EXP)
cobalt dichloride  (EXP)
copper(II) sulfate  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
dextran sulfate  (ISO)
dioxygen  (EXP)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
epoxiconazole  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
Evodiamine  (ISO)
flutamide  (EXP)
folic acid  (ISO)
gentamycin  (EXP)
hydrogen peroxide  (ISO)
hydroquinone  (ISO)
Licochalcone B  (ISO)
lipopolysaccharide  (ISO)
methapyrilene  (EXP)
N-ethyl-N-nitrosourea  (ISO)
N-methyl-4-phenylpyridinium  (EXP)
N-nitrosodiethylamine  (EXP)
nefazodone  (EXP)
nickel atom  (ISO)
oxaliplatin  (EXP)
paracetamol  (EXP,ISO)
pentachlorophenol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
tamoxifen  (ISO)
temozolomide  (ISO)
tetrachloromethane  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
triclosan  (ISO)
triphenyl phosphate  (ISO)
Triptolide  (EXP)
urethane  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)
zidovudine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IEA,ISO)
cytosol  (IEA,ISO)
mitochondrion  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,IEA,ISO)
protein-containing complex  (IEA,ISO)
site of DNA damage  (IEA,ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures and Mechanisms of Enzymes Employed in the Synthesis and Degradation of PARP-Dependent Protein ADP-Ribosylation. Barkauskaite E, etal., Mol Cell. 2015 Jun 18;58(6):935-46. doi: 10.1016/j.molcel.2015.05.007.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:12477932   PMID:16061477   PMID:16809771   PMID:19946888   PMID:23230272   PMID:26479788   PMID:27796300   PMID:28525742  


Genomics

Comparative Map Data
Parp9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81178,286,282 - 78,320,409 (-)NCBIGRCr8
mRatBN7.21164,780,977 - 64,814,995 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1164,780,981 - 64,815,455 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1173,606,279 - 73,638,748 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01166,268,543 - 66,301,015 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01165,299,789 - 65,332,261 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01167,724,071 - 67,758,027 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1167,724,076 - 67,756,799 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01170,812,294 - 70,846,215 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41166,615,587 - 66,648,294 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11166,673,175 - 66,702,103 (-)NCBI
Celera1164,246,917 - 64,279,634 (-)NCBICelera
Cytogenetic Map11q22NCBI
PARP9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383122,527,924 - 122,564,784 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3122,527,924 - 122,564,577 (-)EnsemblGRCh38hg38GRCh38
GRCh373122,246,771 - 122,283,631 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363123,729,461 - 123,766,114 (-)NCBINCBI36Build 36hg18NCBI36
Build 343123,729,462 - 123,766,114NCBI
Celera3120,656,569 - 120,693,333 (-)NCBICelera
Cytogenetic Map3q21.1NCBI
HuRef3119,620,038 - 119,656,801 (-)NCBIHuRef
CHM1_13122,210,449 - 122,247,205 (-)NCBICHM1_1
T2T-CHM13v2.03125,247,222 - 125,284,030 (-)NCBIT2T-CHM13v2.0
Parp9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391635,759,360 - 35,792,975 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1635,758,840 - 35,792,975 (+)EnsemblGRCm39 Ensembl
GRCm381635,938,470 - 35,972,621 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1635,938,470 - 35,972,605 (+)EnsemblGRCm38mm10GRCm38
MGSCv371635,938,556 - 35,972,691 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361635,858,217 - 35,892,352 (+)NCBIMGSCv36mm8
Celera1636,418,713 - 36,452,749 (+)NCBICelera
Cytogenetic Map16B3NCBI
cM Map1625.43NCBI
Parp9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542721,770,577 - 21,804,717 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542721,770,158 - 21,806,091 (-)NCBIChiLan1.0ChiLan1.0
PARP9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22120,472,642 - 120,509,741 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13120,477,421 - 120,514,085 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03119,617,722 - 119,655,039 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13126,522,859 - 126,559,609 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3126,522,859 - 126,559,647 (-)Ensemblpanpan1.1panPan2
PARP9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13325,643,439 - 25,676,979 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3325,643,883 - 25,677,462 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3325,667,797 - 25,701,331 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03325,878,555 - 25,912,166 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3325,878,555 - 25,912,539 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13325,675,496 - 25,709,331 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03325,718,998 - 25,752,634 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03326,276,577 - 26,310,190 (-)NCBIUU_Cfam_GSD_1.0
Parp9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602128,677,266 - 128,715,188 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365368,806,818 - 8,840,746 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365368,806,824 - 8,845,099 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PARP9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13137,966,562 - 138,000,846 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113137,960,987 - 138,000,862 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213147,581,288 - 147,621,200 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PARP9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12258,297,526 - 58,336,243 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2258,298,046 - 58,337,124 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041108,011,893 - 108,049,617 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Parp9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624912827,547 - 859,199 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624912827,112 - 968,501 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Parp9
354 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:305
Count of miRNA genes:205
Interacting mature miRNAs:221
Transcripts:ENSRNOT00000030975
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)115980279482566553Rat
70180BpQTLcluster10Blood pressure QTL cluster 103.19arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)113491804179918041Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
4889859Pur28Proteinuria QTL 2819.50.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)114545932375190161Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
10755497Bp388Blood pressure QTL 3882.76arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)111945620576331918Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)116034659086241447Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)113123913478851519Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)114094618882566702Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)114428575982566702Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)115445753486241447Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)115513672982993457Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)115635142486241447Rat
631506Bp104Blood pressure QTL 1042.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)115980279482566545Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat

Markers in Region
BI276601  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21164,781,202 - 64,781,367 (+)MAPPERmRatBN7.2
Rnor_6.01167,724,297 - 67,724,461NCBIRnor6.0
Rnor_5.01170,812,520 - 70,812,684UniSTSRnor5.0
RGSC_v3.41166,615,810 - 66,615,974UniSTSRGSC3.4
Celera1164,247,140 - 64,247,304UniSTS
RH 3.4 Map11468.81UniSTS
Cytogenetic Map11q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001103351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010055954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC128756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000030975   ⟹   ENSRNOP00000033812
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1164,780,981 - 64,814,846 (-)Ensembl
Rnor_6.0 Ensembl1167,724,076 - 67,756,799 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000113151   ⟹   ENSRNOP00000079250
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1164,780,981 - 64,807,463 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000115242   ⟹   ENSRNOP00000077770
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1164,780,981 - 64,815,455 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000116577   ⟹   ENSRNOP00000090237
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1164,780,995 - 64,815,455 (-)Ensembl
RefSeq Acc Id: NM_001103351   ⟹   NP_001096821
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81178,286,285 - 78,319,011 (-)NCBI
mRatBN7.21164,780,980 - 64,813,712 (-)NCBI
Rnor_6.01167,724,074 - 67,756,797 (-)NCBI
Rnor_5.01170,812,294 - 70,846,215 (-)NCBI
RGSC_v3.41166,615,587 - 66,648,294 (-)RGD
Celera1164,246,917 - 64,279,634 (-)RGD
Sequence:
RefSeq Acc Id: XM_017597995   ⟹   XP_017453484
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81178,286,282 - 78,320,273 (-)NCBI
mRatBN7.21164,780,977 - 64,814,995 (-)NCBI
Rnor_6.01167,724,071 - 67,758,027 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017597996   ⟹   XP_017453485
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81178,286,282 - 78,320,158 (-)NCBI
mRatBN7.21164,780,977 - 64,814,858 (-)NCBI
Rnor_6.01167,724,071 - 67,757,936 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039088343   ⟹   XP_038944271
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81178,286,282 - 78,319,296 (-)NCBI
mRatBN7.21164,780,977 - 64,813,983 (-)NCBI
RefSeq Acc Id: XM_039088346   ⟹   XP_038944274
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81178,286,282 - 78,320,283 (-)NCBI
mRatBN7.21164,780,977 - 64,814,995 (-)NCBI
RefSeq Acc Id: XM_039088347   ⟹   XP_038944275
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81178,286,282 - 78,320,159 (-)NCBI
mRatBN7.21164,780,977 - 64,814,859 (-)NCBI
RefSeq Acc Id: XM_039088351   ⟹   XP_038944279
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81178,286,282 - 78,320,073 (-)NCBI
mRatBN7.21164,780,977 - 64,814,858 (-)NCBI
RefSeq Acc Id: XM_063270517   ⟹   XP_063126587
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81178,286,282 - 78,320,409 (-)NCBI
RefSeq Acc Id: XM_063270518   ⟹   XP_063126588
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81178,286,282 - 78,320,141 (-)NCBI
RefSeq Acc Id: XM_063270519   ⟹   XP_063126589
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81178,286,282 - 78,320,149 (-)NCBI
RefSeq Acc Id: XM_063270520   ⟹   XP_063126590
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81178,293,446 - 78,320,401 (-)NCBI
RefSeq Acc Id: XM_063270521   ⟹   XP_063126591
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81178,286,282 - 78,320,114 (-)NCBI
RefSeq Acc Id: XM_063270522   ⟹   XP_063126592
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81178,286,282 - 78,319,333 (-)NCBI
RefSeq Acc Id: XR_010055954
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81178,293,446 - 78,320,401 (-)NCBI
RefSeq Acc Id: NP_001096821   ⟸   NM_001103351
- UniProtKB: A1A5Q1 (UniProtKB/TrEMBL),   F1MAR0 (UniProtKB/TrEMBL),   A6IRE6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453484   ⟸   XM_017597995
- Peptide Label: isoform X2
- UniProtKB: A0A8J8Y5V1 (UniProtKB/TrEMBL),   A0A8I5Y6A7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453485   ⟸   XM_017597996
- Peptide Label: isoform X2
- UniProtKB: A0A8J8Y5V1 (UniProtKB/TrEMBL),   A0A8I5Y6A7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000033812   ⟸   ENSRNOT00000030975
RefSeq Acc Id: XP_038944274   ⟸   XM_039088346
- Peptide Label: isoform X2
- UniProtKB: A0A8J8Y5V1 (UniProtKB/TrEMBL),   A0A8I5Y6A7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944275   ⟸   XM_039088347
- Peptide Label: isoform X2
- UniProtKB: A0A8J8Y5V1 (UniProtKB/TrEMBL),   A0A8I5Y6A7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944279   ⟸   XM_039088351
- Peptide Label: isoform X3
- UniProtKB: F1MAR0 (UniProtKB/TrEMBL),   A1A5Q1 (UniProtKB/TrEMBL),   A6IRE6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944271   ⟸   XM_039088343
- Peptide Label: isoform X2
- UniProtKB: A0A8J8Y5V1 (UniProtKB/TrEMBL),   A0A8I5Y6A7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000079250   ⟸   ENSRNOT00000113151
Ensembl Acc Id: ENSRNOP00000077770   ⟸   ENSRNOT00000115242
Ensembl Acc Id: ENSRNOP00000090237   ⟸   ENSRNOT00000116577
RefSeq Acc Id: XP_063126587   ⟸   XM_063270517
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AD67 (UniProtKB/TrEMBL),   A0A8I5ZMQ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126589   ⟸   XM_063270519
- Peptide Label: isoform X2
- UniProtKB: A0A8J8Y5V1 (UniProtKB/TrEMBL),   A0A8I5Y6A7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126588   ⟸   XM_063270518
- Peptide Label: isoform X2
- UniProtKB: A0A8J8Y5V1 (UniProtKB/TrEMBL),   A0A8I5Y6A7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126591   ⟸   XM_063270521
- Peptide Label: isoform X5
- UniProtKB: A6IRE8 (UniProtKB/TrEMBL),   A0A8I5ZMQ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126592   ⟸   XM_063270522
- Peptide Label: isoform X5
- UniProtKB: A6IRE8 (UniProtKB/TrEMBL),   A0A8I5ZMQ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126590   ⟸   XM_063270520
- Peptide Label: isoform X4
Protein Domains
Macro   PARP catalytic

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A1A5Q1-F1-model_v2 AlphaFold A1A5Q1 1-830 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307534 AgrOrtholog
BioCyc Gene G2FUF-21208 BioCyc
Ensembl Genes ENSRNOG00000023463 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000030975.6 UniProtKB/TrEMBL
  ENSRNOT00000113151 ENTREZGENE
  ENSRNOT00000113151.1 UniProtKB/TrEMBL
  ENSRNOT00000115242.1 UniProtKB/TrEMBL
  ENSRNOT00000116577 ENTREZGENE
  ENSRNOT00000116577.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.220.10 UniProtKB/TrEMBL
  3.90.228.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7105391 IMAGE-MGC_LOAD
InterPro A1pp UniProtKB/TrEMBL
  Macro_dom-like UniProtKB/TrEMBL
  Mono-ARTD/PARP UniProtKB/TrEMBL
  Poly(ADP-ribose)pol_cat_dom UniProtKB/TrEMBL
KEGG Report rno:303905 UniProtKB/TrEMBL
MGC_CLONE MGC:156739 IMAGE-MGC_LOAD
NCBI Gene 303905 ENTREZGENE
PANTHER PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN UniProtKB/TrEMBL
  PROTEIN MONO-ADP-RIBOSYLTRANSFERASE PARP9 UniProtKB/TrEMBL
Pfam Macro UniProtKB/TrEMBL
PhenoGen Parp9 PhenoGen
PROSITE MACRO UniProtKB/TrEMBL
  PARP_CATALYTIC UniProtKB/TrEMBL
RatGTEx ENSRNOG00000023463 RatGTEx
SMART A1pp UniProtKB/TrEMBL
Superfamily-SCOP ADP-ribosylation UniProtKB/TrEMBL
  SSF52949 UniProtKB/TrEMBL
UniProt A0A8I5Y6A7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZMQ5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AD67 ENTREZGENE, UniProtKB/TrEMBL
  A0A8J8Y5V1 ENTREZGENE, UniProtKB/TrEMBL
  A1A5Q1 ENTREZGENE, UniProtKB/TrEMBL
  A6IRE6 ENTREZGENE, UniProtKB/TrEMBL
  A6IRE8 ENTREZGENE, UniProtKB/TrEMBL
  F1MAR0 ENTREZGENE
UniProt Secondary F1MAR0 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Parp9  poly (ADP-ribose) polymerase family, member 9   Parp9_predicted  poly (ADP-ribose) polymerase family, member 9 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Parp9_predicted  poly (ADP-ribose) polymerase family, member 9 (predicted)  RGD1307534_predicted  similar to B aggressive lymphoma (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1307534_predicted  similar to B aggressive lymphoma (predicted)  LOC303905_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC303905_predicted  similar to B aggressive lymphoma (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL