Krt8-ps1 (keratin 8, pseudogene 1) - Rat Genome Database

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Gene: Krt8-ps1 (keratin 8, pseudogene 1) Rattus norvegicus
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Symbol: Krt8-ps1
Name: keratin 8, pseudogene 1
RGD ID: 1561232
Description: INTERACTS WITH 6-propyl-2-thiouracil; bisphenol A; Cuprizon
Type: pseudo
Previously known as: keratin 8-like; LOC498086; RGD1561232; similar to Keratin, type II cytoskeletal 8 (Cytokeratin 8) (Cytokeratin endo A)
Related Functional Gene: Krt8  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21163,073,269 - 63,075,284 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.01165,966,995 - 65,971,851 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01169,062,019 - 69,063,723 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1162,567,022 - 62,571,982 (+)NCBICelera
Cytogenetic Map11q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:17332340  


Genomics

Variants

.
Variants in Krt8-ps1
95 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)115980279482566553Rat
70180BpQTLcluster10Blood pressure QTL cluster 103.19arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)113491804179918041Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
4889859Pur28Proteinuria QTL 2819.50.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)114545932375190161Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
10755497Bp388Blood pressure QTL 3882.76arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)111945620576331918Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)116034659086241447Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)113123913478851519Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)114094618882566702Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)114428575982566702Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)115445753486241447Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)115513672982993457Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)115635142486241447Rat
631506Bp104Blood pressure QTL 1042.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)115980279482566545Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat

Markers in Region
BI284447  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27133,124,547 - 133,125,318 (+)MAPPERmRatBN7.2
mRatBN7.21163,074,842 - 63,075,045 (+)MAPPERmRatBN7.2
Rnor_6.01165,971,316 - 65,971,518NCBIRnor6.0
Rnor_6.07143,596,856 - 143,597,626NCBIRnor6.0
Rnor_5.01169,063,210 - 69,063,412UniSTSRnor5.0
Rnor_5.07141,393,349 - 141,394,119UniSTSRnor5.0
RGSC_v3.47140,714,247 - 140,715,017UniSTSRGSC3.4
RGSC_v3.41164,864,363 - 64,864,565UniSTSRGSC3.4
Celera1162,571,445 - 62,571,647UniSTS
Celera7129,561,680 - 129,562,450UniSTS
RH 3.4 Map11497.4UniSTS
Cytogenetic Map7q36UniSTS
Krt8  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21163,074,397 - 63,074,903 (+)MAPPERmRatBN7.2
Rnor_6.01165,970,871 - 65,971,376NCBIRnor6.0
Rnor_5.01169,062,765 - 69,063,270UniSTSRnor5.0
RGSC_v3.41164,863,918 - 64,864,423UniSTSRGSC3.4
Celera1162,571,000 - 62,571,505UniSTS
Cytogenetic Map7q36UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_146223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_146545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XR_146223
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_5.01169,062,030 - 69,063,543 (+)NCBI
RefSeq Acc Id: XR_146545
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1162,570,215 - 62,571,778 (+)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-21256 BioCyc
NCBI Gene Krt8-ps1 ENTREZGENE
PhenoGen Krt8-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Krt8-ps1  keratin 8, pseudogene 1  RGD1561232  similar to Keratin, type II cytoskeletal 8 (Cytokeratin 8) (Cytokeratin endo A)  Symbol and Name Changed 1299863 APPROVED
2012-07-02 RGD1561232  similar to Keratin, type II cytoskeletal 8 (Cytokeratin 8) (Cytokeratin endo A)  LOC100362689  keratin 8-like  Data merged from RGD:2324269 1643240 APPROVED
2010-05-06 LOC100362689  keratin 8-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 RGD1561232  similar to Keratin, type II cytoskeletal 8 (Cytokeratin 8) (Cytokeratin endo A)   RGD1561232_predicted  similar to Keratin, type II cytoskeletal 8 (Cytokeratin 8) (Cytokeratin endo A) (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1561232_predicted  similar to Keratin, type II cytoskeletal 8 (Cytokeratin 8) (Cytokeratin endo A) (predicted)  LOC498086  similar to Keratin, type II cytoskeletal 8 (Cytokeratin 8) (Cytokeratin endo A)  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC498086  similar to Keratin, type II cytoskeletal 8 (Cytokeratin 8) (Cytokeratin endo A)      Symbol and Name status set to provisional 70820 PROVISIONAL