Aifm3 (AIF family member 3) - Rat Genome Database

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Gene: Aifm3 (AIF family member 3) Rattus norvegicus
Analyze
Symbol: Aifm3
Name: AIF family member 3 (Ensembl:apoptosis inducing factor, mitochondria associated 3)
RGD ID: 1306028
Description: Predicted to enable oxidoreductase activity, acting on NAD(P)H. Predicted to be involved in execution phase of apoptosis. Predicted to be located in endoplasmic reticulum and mitochondrial inner membrane. Predicted to be active in mitochondrion. Orthologous to human AIFM3 (AIF family member 3); INTERACTS WITH 17beta-estradiol; 2,2',4,4'-Tetrabromodiphenyl ether; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: apoptosis inducing factor, mitochondria associated 3; apoptosis-inducing factor 3; apoptosis-inducing factor, mitochondrion-associated 3; LOC303786; MGC109275; RGD1306028; similar to hypothetical protein FLJ30473
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81197,009,100 - 97,030,601 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1197,008,426 - 97,023,334 (-)EnsemblGRCr8
mRatBN7.21183,504,859 - 83,523,630 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1183,504,861 - 83,521,248 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1192,232,276 - 92,247,077 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01184,893,435 - 84,908,236 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01183,947,043 - 83,961,844 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01187,364,452 - 87,380,705 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1187,366,621 - 87,380,704 (+)Ensemblrn6Rnor6.0
Rnor_5.01190,417,097 - 90,431,999 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41185,496,302 - 85,512,831 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1182,273,467 - 82,288,125 (-)NCBICelera
RGSC_v3.11185,544,286 - 85,551,637 (-)NCBI
Cytogenetic Map11q23NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IEA,ISO)
endoplasmic reticulum  (IEA,ISO)
mitochondrial inner membrane  (IEA,ISO)
mitochondrion  (IBA,IEA,ISO)
nucleus  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15764604   PMID:18614015   PMID:21447364   PMID:22085972   PMID:22871113  


Genomics

Comparative Map Data
Aifm3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81197,009,100 - 97,030,601 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1197,008,426 - 97,023,334 (-)EnsemblGRCr8
mRatBN7.21183,504,859 - 83,523,630 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1183,504,861 - 83,521,248 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1192,232,276 - 92,247,077 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01184,893,435 - 84,908,236 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01183,947,043 - 83,961,844 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01187,364,452 - 87,380,705 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1187,366,621 - 87,380,704 (+)Ensemblrn6Rnor6.0
Rnor_5.01190,417,097 - 90,431,999 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41185,496,302 - 85,512,831 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1182,273,467 - 82,288,125 (-)NCBICelera
RGSC_v3.11185,544,286 - 85,551,637 (-)NCBI
Cytogenetic Map11q23NCBI
AIFM3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382220,965,172 - 20,981,358 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2220,965,108 - 20,981,364 (+)Ensemblhg38GRCh38
GRCh372221,319,460 - 21,335,647 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362219,649,434 - 19,665,649 (+)NCBIBuild 36Build 36hg18NCBI36
Celera224,810,763 - 4,826,996 (+)NCBICelera
Cytogenetic Map22q11.21NCBI
HuRef224,589,741 - 4,603,945 (+)NCBIHuRef
CHM1_12221,319,619 - 21,335,846 (+)NCBICHM1_1
T2T-CHM13v2.02221,373,992 - 21,390,168 (+)NCBIT2T-CHM13v2.0
Aifm3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391617,307,418 - 17,325,349 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1617,307,475 - 17,325,349 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381617,489,624 - 17,507,485 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1617,489,611 - 17,507,485 (+)Ensemblmm10GRCm38
MGSCv371617,489,784 - 17,507,575 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361617,403,254 - 17,421,045 (+)NCBIMGSCv36mm8
Celera1618,062,758 - 18,080,551 (+)NCBICelera
Cytogenetic Map16A3NCBI
cM Map1610.84NCBI
Aifm3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544219,333,591 - 19,346,438 (-)Ensembl
ChiLan1.0NW_00495544219,334,217 - 19,346,438 (-)NCBIChiLan1.0ChiLan1.0
AIFM3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22330,663,078 - 30,688,168 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12233,220,882 - 33,237,106 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0223,189,169 - 3,205,394 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12219,679,872 - 19,695,349 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2219,679,873 - 19,695,349 (+)EnsemblpanPan2panpan1.1
AIFM3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12630,520,542 - 30,533,256 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2630,519,872 - 30,532,796 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2630,478,323 - 30,492,711 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02631,928,867 - 31,943,261 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2631,910,811 - 31,943,250 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12629,974,681 - 29,989,031 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02629,598,646 - 29,613,004 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02630,687,693 - 30,702,093 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Aifm3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118140,249,410 - 140,263,534 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366192,493,256 - 2,504,322 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366192,485,840 - 2,505,075 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AIFM3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1450,562,776 - 50,576,275 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11450,562,611 - 50,576,273 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21454,011,363 - 54,025,438 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Aifm3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624945710,820 - 722,621 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624945710,562 - 724,699 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Aifm3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v142,743,514 - 2,760,084 (+)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:166
Count of miRNA genes:113
Interacting mature miRNAs:118
Transcripts:ENSRNOT00000040978
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)117385089499753367Rat
4889859Pur28Proteinuria QTL 2819.50.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)115892833699753367Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)116796218499753367Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)116985594399753367Rat
631506Bp104Blood pressure QTL 1042.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)117330831599753367Rat
1549848Bvd6Brain ventricular dilatation QTL 63.10.0001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)117961851999753367Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 161 91 90 59 89 59 6 353 189 11 140 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000040978   ⟹   ENSRNOP00000048427
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1197,009,100 - 97,023,334 (-)Ensembl
mRatBN7.2 Ensembl1183,504,861 - 83,519,593 (-)Ensembl
Rnor_6.0 Ensembl1187,366,621 - 87,380,378 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000086117   ⟹   ENSRNOP00000073999
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1197,012,800 - 97,015,115 (-)Ensembl
mRatBN7.2 Ensembl1183,504,862 - 83,510,876 (-)Ensembl
Rnor_6.0 Ensembl1187,374,690 - 87,380,704 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000112032   ⟹   ENSRNOP00000088997
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1197,008,426 - 97,023,334 (-)Ensembl
mRatBN7.2 Ensembl1183,504,925 - 83,521,248 (-)Ensembl
RefSeq Acc Id: NM_001013977   ⟹   NP_001013999
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81197,009,100 - 97,023,832 (-)NCBI
mRatBN7.21183,504,861 - 83,519,593 (-)NCBI
Rnor_6.01187,365,973 - 87,380,705 (+)NCBI
Rnor_5.01190,417,097 - 90,431,999 (+)NCBI
RGSC_v3.41185,496,302 - 85,512,831 (-)RGD
Celera1182,273,467 - 82,288,125 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008768875   ⟹   XP_008767097
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81197,009,100 - 97,030,601 (-)NCBI
mRatBN7.21183,505,181 - 83,523,627 (-)NCBI
Rnor_6.01187,364,452 - 87,380,431 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039088259   ⟹   XP_038944187
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81197,009,100 - 97,030,601 (-)NCBI
mRatBN7.21183,505,181 - 83,523,627 (-)NCBI
RefSeq Acc Id: XM_039088260   ⟹   XP_038944188
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81197,009,100 - 97,030,601 (-)NCBI
mRatBN7.21183,505,181 - 83,523,627 (-)NCBI
RefSeq Acc Id: XM_063270454   ⟹   XP_063126524
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81197,009,100 - 97,030,601 (-)NCBI
RefSeq Acc Id: XM_063270455   ⟹   XP_063126525
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81197,009,100 - 97,030,601 (-)NCBI
RefSeq Acc Id: XM_063270456   ⟹   XP_063126526
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81197,009,100 - 97,016,021 (-)NCBI
RefSeq Acc Id: XR_010055949
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81197,011,537 - 97,030,601 (-)NCBI
RefSeq Acc Id: NP_001013999   ⟸   NM_001013977
- UniProtKB: D3ZF03 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008767097   ⟸   XM_008768875
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000048427   ⟸   ENSRNOT00000040978
Ensembl Acc Id: ENSRNOP00000073999   ⟸   ENSRNOT00000086117
RefSeq Acc Id: XP_038944188   ⟸   XM_039088260
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038944187   ⟸   XM_039088259
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000088997   ⟸   ENSRNOT00000112032
RefSeq Acc Id: XP_063126525   ⟸   XM_063270455
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A793 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126524   ⟸   XM_063270454
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A793 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126526   ⟸   XM_063270456
- Peptide Label: isoform X3
Protein Domains
FAD/NAD(P)-binding   Rieske

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZF03-F1-model_v2 AlphaFold D3ZF03 1-604 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306028 AgrOrtholog
BioCyc Gene G2FUF-20590 BioCyc
Ensembl Genes ENSRNOG00000037957 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000040978 ENTREZGENE
  ENSRNOT00000040978.6 UniProtKB/TrEMBL
  ENSRNOT00000086117.3 UniProtKB/TrEMBL
  ENSRNOT00000112032 ENTREZGENE
  ENSRNOT00000112032.2 UniProtKB/TrEMBL
Gene3D-CATH 2.102.10.10 UniProtKB/TrEMBL
  3.30.390.30 UniProtKB/TrEMBL
  3.50.50.60 UniProtKB/TrEMBL
InterPro FAD-oxidoreductase/Apoptosis UniProtKB/TrEMBL
  FAD/NAD-bd_sf UniProtKB/TrEMBL
  FAD/NAD-linked_Rdtase_dimer UniProtKB/TrEMBL
  Pyr_nucl-diS_OxRdtase_FAD/NAD UniProtKB/TrEMBL
  Reductase_C UniProtKB/TrEMBL
  Rieske_2Fe-2S UniProtKB/TrEMBL
  Rieske_2Fe-2S_sf UniProtKB/TrEMBL
KEGG Report rno:303786 UniProtKB/TrEMBL
NCBI Gene 303786 ENTREZGENE
PANTHER APOPTOSIS-INDUCING FACTOR 1 UniProtKB/TrEMBL
  APOPTOSIS-INDUCING FACTOR 3 UniProtKB/TrEMBL
Pfam Pyr_redox_2 UniProtKB/TrEMBL
  Reductase_C UniProtKB/TrEMBL
  Rieske UniProtKB/TrEMBL
PhenoGen Aifm3 PhenoGen
PRINTS FADPNR UniProtKB/TrEMBL
  PNDRDTASEI UniProtKB/TrEMBL
  PNDRDTASEII UniProtKB/TrEMBL
PROSITE RIESKE UniProtKB/TrEMBL
RatGTEx ENSRNOG00000037957 RatGTEx
Superfamily-SCOP FAD/NAD-linked_reductase_dimer UniProtKB/TrEMBL
  Rieske_dom UniProtKB/TrEMBL
  SSF51905 UniProtKB/TrEMBL
UniProt A0A8I6A793 ENTREZGENE, UniProtKB/TrEMBL
  D3ZF03 ENTREZGENE, UniProtKB/TrEMBL
  Q5FVJ2_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-11-07 Aifm3  AIF family member 3  Aifm3  apoptosis inducing factor, mitochondria associated 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-11-25 Aifm3  apoptosis inducing factor, mitochondria associated 3  Aifm3  apoptosis-inducing factor, mitochondrion-associated 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Aifm3  apoptosis-inducing factor, mitochondrion-associated 3  RGD1306028  similar to hypothetical protein FLJ30473  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1306028  similar to hypothetical protein FLJ30473  RGD1306028_predicted  similar to hypothetical protein FLJ30473 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1306028_predicted  similar to hypothetical protein FLJ30473 (predicted)  LOC303786_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC303786_predicted  similar to hypothetical protein FLJ30473 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL