Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Slc49a4 (solute carrier family 49 member 4) Rattus norvegicus
Analyze
Symbol: Slc49a4
Name: solute carrier family 49 member 4
RGD ID: 1310939
Description: Predicted to have cofactor transmembrane transporter activity. Predicted to be involved in cofactor transport. Predicted to localize to intracellular membrane-bounded organelle. Human ortholog(s) of this gene implicated in renal cell carcinoma. Orthologous to human SLC49A4 (solute carrier family 49 member 4); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: Dirc2; disrupted in renal carcinoma 2; disrupted in renal carcinoma 2 (human); disrupted in renal carcinoma 2 homolog; disrupted in renal carcinoma 2 homolog (human); disrupted in renal carcinoma protein 2 homolog; LOC303902
Orthologs:
Homo sapiens (human) : SLC49A4 (solute carrier family 49 member 4)  HGNC  Alliance
Mus musculus (house mouse) : Slc49a4 (solute carrier family 49 member 4)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Slc49a4 (solute carrier family 49 member 4)
Pan paniscus (bonobo/pygmy chimpanzee) : SLC49A4 (solute carrier family 49 member 4)
Canis lupus familiaris (dog) : SLC49A4 (solute carrier family 49 member 4)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Slc49a4 (solute carrier family 49 member 4)
Sus scrofa (pig) : SLC49A4 (solute carrier family 49 member 4)
Chlorocebus sabaeus (African green monkey) : SLC49A4 (solute carrier family 49 member 4)
Heterocephalus glaber (naked mole-rat) : Slc49a4 (solute carrier family 49 member 4)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01168,198,709 - 68,272,766 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1168,198,709 - 68,272,758 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01171,288,001 - 71,359,978 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41166,829,715 - 66,910,201 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11166,887,303 - 66,967,787 (+)NCBI
Celera1164,458,017 - 64,531,072 (+)NCBICelera
Cytogenetic Map11q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Slc49a4
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1310939
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.