Scfw3 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Scfw3 (Subcutaneous fat weight QTL 3) Rattus norvegicus

Symbol: Scfw3
Name: Subcutaneous fat weight QTL 3
RGD ID: 9589048
Previously known as: percentage of subcutaneous fat
Trait: subcutaneous adipose mass   (VT:1000472)    
Measurement Type: abdominal subcutaneous fat pad weight   (CMO:0002069)    
LOD Score: 4.57
P Value: 0.001
Variance: 4.8
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr861,975,879 - 46,975,879RGD_MAPPER_PIPELINE
mRatBN7.261 - 41,223,769RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.061 - 42,388,212RGD_MAPPER_PIPELINERnor6.0
Rnor_5.067,284,088 - 52,284,088RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.461 - 41,116,093RGD_MAPPER_PIPELINERGSC3.4
Cross Type: intercross
Strains Crossed: F344/IcoCrlf LOU/NimrOlaHsd 
JBrowse: View Region in Genome Browser (JBrowse)
Model




  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Scfw3Ratabdominal obesity-metabolic syndrome  IAGP 8694157 RGD 
Scfw3RatWeight Gain  IAGP 8694157 RGD 

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Scfw3Ratincreased body weight  IDA 8694157 RGD 

Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Scfw3Ratabdominal subcutaneous fat pad weight  IDA 8694157 RGD 

Experimental Condition
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Scfw3Ratcontrol condition  IDA 8694157 RGD 

Measurement Method
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Scfw3Ratdigital column scale  IDA 8694157 RGD 

Rat Strain
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Scfw3RatF344/IcoCrlf  IEA 8694157 RGD 
Scfw3RatLOU/NimrOlaHsd  IEA 8694157 RGD 

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Scfw3Ratsubcutaneous adipose mass  IDA 8694157 RGD 


#
Reference Title
Reference Citation
1. Quantitative Trait Loci Influencing Abdominal Fat Deposition and Functional Variability of the HPA Axis in the Rat. Marissal-Arvy N, etal., Horm Metab Res. 2014 Jul 8.


1 to 20 of 474 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1585856Ralbp1l2ralA binding protein 1 like 2638788192192Rat
41317278Txnl4al2thioredoxin-like 4A like 26111150111805Rat
7685759Naa11-ps2N(alpha)-acetyltransferase 11, NatA catalytic subunit, pseudogene 26111437112376Rat
11409802LOC108350029uncharacterized LOC1083500296118567177281Rat
1310083Cwf19l2CWF19 like cell cycle control factor 26290148356636Rat
41248162Tmem126a-ps4transmembrane protein 126A, pseudogene 46310136310857Rat
1304687Alkbh8alkB homolog 8, tRNA methyltransferase6378779449382Rat
7740587Pank3-ps2pantothenate kinase 3, pseudogene 26402201406363Rat
1304582Mtm1myotubularin 16488923506882Rat
7723359LOC102553826uncharacterized LOC1025538266507112528358Rat
1596478Rrs1-ps15ribosome biogenesis regulator 1 homolog, pseudogene 156540847548560Rat
2319303Egln1-ps6egl-9 family hypoxia-inducible factor 1, pseudogene 66556312561717Rat
1597710Car13l1carbonic anhydrase 13 like 16615673623476Rat
1564275Znhit1-ps1zinc finger, HIT-type containing 1, pseudogene 16887012887449Rat
7242712Crnkl1-ps1crooked neck pre-mRNA splicing factor 1, pseudogene 1611406151142929Rat
41289894LOC120093494small nucleolar RNA U3612524181252490Rat
1560460Ppp1cb-ps7protein phosphatase 1 catalytic subunit beta, pseudogene 7613918881394865Rat
1309234Uap1l2UDP-N-acetylglucosamine pyrophosphorylase 1 like 2617143201741396Rat
6502562Wac-ps1WW domain containing adaptor with coiled-coil, pseudogene 1620002782003353Rat
2321089LOC100360971hypothetical LOC100360971620200262110273Rat

1 to 20 of 474 rows
1 to 20 of 616 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
33828D6Mit915863330939133309549Ratregion
34138D6Mgh812563207442832074553Ratregion
11488D6Arb721963403955034039769Ratregion
33561D6Mit5171653450075345178Ratregion
36344D12Mit10121615766581576779Ratregion
37298D6Rat10521961872366018723879Ratregion
37410D6Rat10717361952217919522352Ratregion
37496D6Rat108138622993572299495Ratregion
37562D6Rat7715262266434522664497Ratregion
35235D6Rat2913063813689338137023Ratregion
35390D6Rat3614063509870935098849Ratregion
35396D6Rat3516863443413734434305Ratregion
35411D6Rat5614461440416214404306Ratregion
35507D6Rat4317761995589919956076Ratregion
35531D6Rat3815163403951834039669Ratregion
35541D6Rat47146638929043893050Ratregion
37000D6Rat18015561749359817493753Ratregion
37046D6Rat5211763541471835414835Ratregion
37142D6Rat8025261653614016536392Ratregion
37662D6Rat9226963967147639671747Ratregion
1 to 20 of 616 rows

Peak: (D6Rat105)
Rat AssemblyChrPosition (strand)Source
GRCr8624,475,770 - 24,475,989 (+)Marker Load Pipeline
mRatBN7.2618,723,660 - 18,723,879 (+)MAPPER
Rnor_6.0619,888,103 - 19,888,321NCBI
Rnor_5.0629,783,979 - 29,784,197UniSTS
RGSC_v3.4618,615,900 - 18,616,286RGD
RGSC_v3.4618,615,952 - 18,616,170UniSTS
RGSC_v3.1618,618,853 - 18,619,239RGD
Celera618,313,880 - 18,314,280UniSTS
RH 2.0 Map60.0RGD
SHRSP x BN Map619.5099RGD
FHH x ACI Map619.47RGD


1 to 10 of 50 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)63878398983783989Rat
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6141223769Rat
8693632Alc27Alcohol consumption QTL 272.20.791drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)63432335751121479Rat
8693645Alc31Alcohol consumption QTL 313.70.038drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)61753252124011952Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)6134235784Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6141223769Rat
1354632Scl29Serum cholesterol level QTL 293.74blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)63509870971636405Rat
1578758Tcas9Tongue tumor susceptibility QTL 93.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)6137618905Rat

1 to 10 of 50 rows


Note Type Note Reference
qtl_general confidence interval 18.6-33.1 Mb 8694157
qtl_general number of animals used: 93 F2 males and 94 F2 females 8694157
qtl_general measurement method: at the end of the HPA axis function experiment, body weight was taken; subcutaneous fat was removed and weighed and percentage was calculated 8694157
qtl_general software package used: MultiQTL software 8694157