RH141812 Marker Search Result - Rat Genome Database
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Marker: RH141812

Symbol: RH141812
Also known as: AI070100; 
RGD ID: 5080838
Expected Size: 202 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.066,470,748 - 6,470,950NCBIRnor6.0
Rnor_6.066,470,748 - 6,471,111NCBIRnor6.0
Rnor_5.066,427,708 - 6,428,071UniSTSRnor5.0
Rnor_5.066,427,708 - 6,427,910UniSTSRnor5.0
RGSC_v3.466,606,574 - 6,606,776UniSTSRGSC3.4
RGSC_v3.410105,493,315 - 105,493,517UniSTSRGSC3.4
Celera611,125,752 - 11,125,954UniSTS
Cytogenetic Map10q32.3UniSTS
Is Marker For: Genes:   Atp5pd   H3f3b   LOC682432   LOC690171  


Annotation


References - curated
1. RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer GCAGCTCAGTCGATTTCTGGTA
Reverse Primer AGCTTTGGGTGAGAGAAGATGG
 

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1584001LOC690171similar to H3 histone, family 3B664700736482492Rat

Nucleotide Sequences
RefSeq Transcripts NM_053985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC063159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC078759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ235236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X73683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6123620518Rat
1578758Tcas9Tongue tumor susceptibility QTL 93.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)6125048718Rat
738023Alc17Alcohol consumption QTL 173.10.003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)6135623029Rat
1354616Despr12Despair related QTL 120.0012locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)6135623029Rat
1549905Stresp10Stress response QTL 106.830.0066stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)6135623029Rat
2300176Bmd51Bone mineral density QTL 5111.70.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)6135623029Rat
2300190Bmd52Bone mineral density QTL 5211.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)6135623029Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)6141917988Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6142388212Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6142388212Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6142388212Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6142388212Rat
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6142388212Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6143665660Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6143665660Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6143665660Rat
7411584Foco4Food consumption QTL 44.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6144015370Rat
738024Sach5Saccharine consumption QTL 53.90.00039consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)6144570292Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6175623393Rat
8693645Alc31Alcohol consumption QTL 313.70.038drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)613505323600274Rat
1359023Bp272Blood pressure QTL 2722.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)6112039328706721Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)6112039346120393Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)6112039375023446Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)62537030111715717Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)6616172276002731Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)6616172276002731Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 117056 UniSTS
  641434 UniSTS
  682432 UniSTS
  690171 UniSTS
UniGene Rn.198918 UniSTS
  Rn.214701 UniSTS
  Rn.225493 UniSTS
  Rn.29857 UniSTS
UniSTS 223804 UniSTS