Klhl29 (kelch-like family member 29) - Rat Genome Database

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Gene: Klhl29 (kelch-like family member 29) Rattus norvegicus
Analyze
Symbol: Klhl29
Name: kelch-like family member 29
RGD ID: 1311076
Description: Orthologous to human KLHL29 (kelch like family member 29); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Kbtbd9; kelch repeat and BTB (POZ) domain containing 9; kelch-like 29; kelch-like 29 (Drosophila); kelch-like protein 29; LOC298867; MGC189300
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8633,805,922 - 34,110,055 (-)NCBIGRCr8
mRatBN7.2628,086,489 - 28,390,647 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl628,086,489 - 28,390,647 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx628,378,751 - 28,682,882 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0628,694,651 - 28,998,759 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0628,169,174 - 28,473,301 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0629,178,858 - 29,483,460 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl629,178,858 - 29,483,460 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0640,403,632 - 40,707,087 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4628,387,843 - 28,704,178 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1628,392,428 - 28,706,901 (-)NCBI
Celera627,553,938 - 27,856,658 (-)NCBICelera
Cytogenetic Map6q14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:21873635  


Genomics

Comparative Map Data
Klhl29
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8633,805,922 - 34,110,055 (-)NCBIGRCr8
mRatBN7.2628,086,489 - 28,390,647 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl628,086,489 - 28,390,647 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx628,378,751 - 28,682,882 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0628,694,651 - 28,998,759 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0628,169,174 - 28,473,301 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0629,178,858 - 29,483,460 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl629,178,858 - 29,483,460 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0640,403,632 - 40,707,087 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4628,387,843 - 28,704,178 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1628,392,428 - 28,706,901 (-)NCBI
Celera627,553,938 - 27,856,658 (-)NCBICelera
Cytogenetic Map6q14NCBI
KLHL29
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38223,385,179 - 23,708,606 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl223,385,179 - 23,708,611 (+)EnsemblGRCh38hg38GRCh38
GRCh37223,608,050 - 23,931,476 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36223,459,203 - 23,784,987 (+)NCBINCBI36Build 36hg18NCBI36
Celera223,450,093 - 23,772,958 (+)NCBICelera
Cytogenetic Map2p24.1NCBI
HuRef223,348,544 - 23,671,428 (+)NCBIHuRef
CHM1_1223,537,649 - 23,861,192 (+)NCBICHM1_1
T2T-CHM13v2.0223,420,561 - 23,743,675 (+)NCBIT2T-CHM13v2.0
Klhl29
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39125,127,465 - 5,425,682 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl125,127,472 - 5,425,682 (-)EnsemblGRCm39 Ensembl
GRCm38125,077,465 - 5,375,682 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl125,077,472 - 5,375,682 (-)EnsemblGRCm38mm10GRCm38
MGSCv37125,084,271 - 5,382,488 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36125,103,477 - 5,402,008 (-)NCBIMGSCv36mm8
Celera125,000,387 - 5,299,043 (-)NCBICelera
Cytogenetic Map12A1.1NCBI
cM Map122.28NCBI
Klhl29
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554695,863,980 - 5,993,610 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554695,787,946 - 5,993,610 (+)NCBIChiLan1.0ChiLan1.0
KLHL29
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212102,806,410 - 103,133,805 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A102,810,375 - 103,137,914 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A23,382,886 - 23,710,132 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A23,578,102 - 23,811,204 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A23,628,955 - 23,811,204 (+)Ensemblpanpan1.1panPan2
KLHL29
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11717,945,260 - 18,250,942 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1717,945,254 - 18,248,936 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1717,844,622 - 18,150,204 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01718,115,299 - 18,421,277 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1718,198,901 - 18,421,189 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11717,957,229 - 18,262,871 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01717,964,343 - 18,270,034 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01718,006,133 - 18,312,297 (+)NCBIUU_Cfam_GSD_1.0
Klhl29
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629262,384,345 - 62,663,916 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364938,175,649 - 8,455,220 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364938,175,649 - 8,303,569 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KLHL29
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3114,871,164 - 115,177,466 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13114,871,659 - 114,937,646 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23122,136,541 - 122,441,282 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KLHL29
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11483,941,173 - 84,261,880 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1483,943,146 - 84,261,785 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604527,897,744 - 28,219,720 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Klhl29
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247385,918,437 - 6,112,925 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247385,845,272 - 6,112,887 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Klhl29
861 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:465
Count of miRNA genes:235
Interacting mature miRNAs:321
Transcripts:ENSRNOT00000007160
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6141223769Rat
738024Sach5Saccharine consumption QTL 53.90.00039consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)6143394190Rat
7411584Foco4Food consumption QTL 44.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6142838846Rat
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6141223769Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6141223769Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6141223769Rat
1300128Rf16Renal function QTL 163.89renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449734434305Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)6134235784Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6141223769Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)61653614071636405Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
1578758Tcas9Tongue tumor susceptibility QTL 93.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)6137618905Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61173566972593685Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6139036266Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6142487980Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)62033877762613667Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6142487980Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6142487980Rat

Markers in Region
D6Rat223  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2628,344,931 - 28,345,175 (+)MAPPERmRatBN7.2
Rnor_6.0629,437,729 - 29,437,972NCBIRnor6.0
Rnor_5.0640,448,141 - 40,448,384UniSTSRnor5.0
Celera627,811,139 - 27,811,382UniSTS
FHH x ACI Map625.9599RGD
FHH x ACI Map625.9599UniSTS
Cytogenetic Map6q14UniSTS
BF386397  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2628,141,673 - 28,141,826 (+)MAPPERmRatBN7.2
Rnor_6.0629,234,450 - 29,234,602NCBIRnor6.0
Rnor_5.0640,651,343 - 40,651,495UniSTSRnor5.0
RGSC_v3.4628,442,960 - 28,443,112UniSTSRGSC3.4
Celera627,608,696 - 27,608,848UniSTS
RH 3.4 Map6117.6UniSTS
Cytogenetic Map6q14UniSTS
BF387869  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2628,086,088 - 28,086,255 (+)MAPPERmRatBN7.2
Rnor_6.0629,178,935 - 29,179,101NCBIRnor6.0
Rnor_5.0640,706,844 - 40,707,010UniSTSRnor5.0
RGSC_v3.4628,387,443 - 28,387,609UniSTSRGSC3.4
Celera627,553,538 - 27,553,704UniSTS
RH 3.4 Map6120.21UniSTS
Cytogenetic Map6q14UniSTS
BE097111  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2628,380,188 - 28,380,344 (+)MAPPERmRatBN7.2
Rnor_6.0629,473,002 - 29,473,157NCBIRnor6.0
Rnor_5.0640,413,935 - 40,414,090UniSTSRnor5.0
Celera627,846,412 - 27,846,567UniSTS
RH 3.4 Map6118.48UniSTS
Cytogenetic Map6q14UniSTS
BE105444  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2628,400,461 - 28,400,631 (+)MAPPERmRatBN7.2
Rnor_6.0629,493,324 - 29,493,493NCBIRnor6.0
Rnor_5.0640,393,599 - 40,393,768UniSTSRnor5.0
RGSC_v3.4628,713,993 - 28,714,162UniSTSRGSC3.4
Celera627,866,822 - 27,866,991UniSTS
RH 3.4 Map6120.1UniSTS
Cytogenetic Map6q14UniSTS
BE106781  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2628,135,960 - 28,136,152 (+)MAPPERmRatBN7.2
Rnor_6.0629,228,737 - 29,228,928NCBIRnor6.0
Rnor_5.0640,657,017 - 40,657,208UniSTSRnor5.0
RGSC_v3.4628,437,247 - 28,437,438UniSTSRGSC3.4
Celera627,602,983 - 27,603,174UniSTS
RH 3.4 Map6118.0UniSTS
Cytogenetic Map6q14UniSTS
BF415854  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2628,257,247 - 28,257,444 (+)MAPPERmRatBN7.2
Rnor_6.0629,349,852 - 29,350,048NCBIRnor6.0
Rnor_5.0640,535,848 - 40,536,044UniSTSRnor5.0
RGSC_v3.4628,559,315 - 28,559,511UniSTSRGSC3.4
Celera627,723,807 - 27,724,003UniSTS
RH 3.4 Map6119.71UniSTS
Cytogenetic Map6q14UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 49
Low 3 24 43 27 19 27 8 11 25 35 41 11 8
Below cutoff 19 14 14 14

Sequence


RefSeq Acc Id: ENSRNOT00000007160   ⟹   ENSRNOP00000007160
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl628,086,489 - 28,390,647 (-)Ensembl
Rnor_6.0 Ensembl629,178,858 - 29,483,460 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000084903   ⟹   ENSRNOP00000070845
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl628,144,049 - 28,314,756 (-)Ensembl
Rnor_6.0 Ensembl629,236,828 - 29,316,493 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000118725   ⟹   ENSRNOP00000091218
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl628,086,489 - 28,390,647 (-)Ensembl
RefSeq Acc Id: NM_001106713   ⟹   NP_001100183
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8633,805,922 - 34,110,055 (-)NCBI
mRatBN7.2628,086,489 - 28,390,647 (-)NCBI
Rnor_6.0629,179,335 - 29,483,460 (-)NCBI
Rnor_5.0640,403,632 - 40,707,087 (+)NCBI
RGSC_v3.4628,387,843 - 28,704,178 (-)RGD
Celera627,553,938 - 27,856,658 (-)RGD
Sequence:
RefSeq Acc Id: XM_006239857   ⟹   XP_006239919
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8633,807,522 - 34,066,683 (-)NCBI
mRatBN7.2628,088,089 - 28,318,060 (-)NCBI
Rnor_6.0629,178,858 - 29,409,553 (-)NCBI
Rnor_5.0640,403,632 - 40,707,087 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008764550   ⟹   XP_008762772
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8633,807,522 - 33,992,844 (-)NCBI
mRatBN7.2628,088,089 - 28,265,192 (-)NCBI
Rnor_6.0629,178,858 - 29,357,803 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594070   ⟹   XP_017449559
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8633,807,522 - 33,980,698 (-)NCBI
mRatBN7.2628,088,089 - 28,261,272 (-)NCBI
Rnor_6.0629,178,858 - 29,357,803 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594072   ⟹   XP_017449561
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8633,807,522 - 34,109,613 (-)NCBI
mRatBN7.2628,088,089 - 28,390,190 (-)NCBI
Rnor_6.0629,178,858 - 29,483,221 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039111919   ⟹   XP_038967847
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8633,807,522 - 34,033,792 (-)NCBI
mRatBN7.2628,088,089 - 28,314,367 (-)NCBI
RefSeq Acc Id: XM_039111920   ⟹   XP_038967848
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8633,807,522 - 34,066,683 (-)NCBI
mRatBN7.2628,088,089 - 28,318,060 (-)NCBI
RefSeq Acc Id: NP_001100183   ⟸   NM_001106713
- UniProtKB: D4AEF4 (UniProtKB/TrEMBL),   A6HAK4 (UniProtKB/TrEMBL),   A0A8I6AE73 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006239919   ⟸   XM_006239857
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AE73 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008762772   ⟸   XM_008764550
- Peptide Label: isoform X4
- UniProtKB: D4AEF4 (UniProtKB/TrEMBL),   A6HAK4 (UniProtKB/TrEMBL),   A0A8I6AE73 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449561   ⟸   XM_017594072
- Peptide Label: isoform X4
- UniProtKB: D4AEF4 (UniProtKB/TrEMBL),   A6HAK4 (UniProtKB/TrEMBL),   A0A8I6AE73 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449559   ⟸   XM_017594070
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AE73 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000070845   ⟸   ENSRNOT00000084903
RefSeq Acc Id: ENSRNOP00000007160   ⟸   ENSRNOT00000007160
RefSeq Acc Id: XP_038967848   ⟸   XM_039111920
- Peptide Label: isoform X4
- UniProtKB: D4AEF4 (UniProtKB/TrEMBL),   A6HAK4 (UniProtKB/TrEMBL),   A0A8I6AE73 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038967847   ⟸   XM_039111919
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AE73 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000091218   ⟸   ENSRNOT00000118725
Protein Domains
BTB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4AEF4-F1-model_v2 AlphaFold D4AEF4 1-875 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694475
Promoter ID:EPDNEW_R5000
Type:multiple initiation site
Name:Klhl29_1
Description:kelch-like family member 29
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0629,483,477 - 29,483,537EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311076 AgrOrtholog
BioCyc Gene G2FUF-38256 BioCyc
Ensembl Genes ENSRNOG00000005371 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000007160 ENTREZGENE
  ENSRNOT00000007160.9 UniProtKB/TrEMBL
  ENSRNOT00000084903.2 UniProtKB/TrEMBL
  ENSRNOT00000118725.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.420 UniProtKB/TrEMBL
  2.120.10.80 UniProtKB/TrEMBL
InterPro BACK UniProtKB/TrEMBL
  BTB/POZ-like UniProtKB/TrEMBL
  BTB/POZ_fold UniProtKB/TrEMBL
  Kelch-typ_b-propeller UniProtKB/TrEMBL
  Kelch_1 UniProtKB/TrEMBL
KEGG Report rno:298867 UniProtKB/TrEMBL
NCBI Gene 298867 ENTREZGENE
PANTHER KELCH PROTEIN UniProtKB/TrEMBL
  KELCH-LIKE PROTEIN 29 UniProtKB/TrEMBL
Pfam BACK UniProtKB/TrEMBL
  BTB UniProtKB/TrEMBL
  Kelch_1 UniProtKB/TrEMBL
PhenoGen Klhl29 PhenoGen
PROSITE BTB UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005371 RatGTEx
SMART BACK UniProtKB/TrEMBL
  BTB UniProtKB/TrEMBL
  Kelch UniProtKB/TrEMBL
Superfamily-SCOP BTB/POZ_fold UniProtKB/TrEMBL
  SSF117281 UniProtKB/TrEMBL
UniProt A0A8I6AE73 ENTREZGENE, UniProtKB/TrEMBL
  A6HAK4 ENTREZGENE, UniProtKB/TrEMBL
  B5DF92_RAT UniProtKB/TrEMBL
  D4AEF4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-02-27 Klhl29  kelch-like family member 29  Klhl29  kelch-like 29 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Klhl29  kelch-like 29 (Drosophila)  Kbtbd9_predicted  kelch repeat and BTB (POZ) domain containing 9 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Kbtbd9_predicted  kelch repeat and BTB (POZ) domain containing 9 (predicted)      Symbol and Name status set to approved 70820 APPROVED