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Imported Disease Annotations - CTDObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Prkd3 | Rat | Weight Gain | | ISO | PRKD3 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:19030233 | |
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Imported Disease Annotations - CTDObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Prkd3 | Rat | Weight Gain | | ISO | PRKD3 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:19030233 | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | Protein kinase D 3 is localized in vesicular structures and interacts with vesicle-associated membrane protein 2. | Lu G, etal., Cell Signal. 2007 Apr;19(4):867-79. Epub 2006 Nov 16. |
3. | GOA pipeline | RGD automated data pipeline |
4. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
5. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
6. | Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. | Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11. |
Prkd3 (Rattus norvegicus - Norway rat) |
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PRKD3 (Homo sapiens - human) |
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Prkd3 (Mus musculus - house mouse) |
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Prkd3 (Chinchilla lanigera - long-tailed chinchilla) |
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PRKD3 (Pan paniscus - bonobo/pygmy chimpanzee) |
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PRKD3 (Canis lupus familiaris - dog) |
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Prkd3 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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PRKD3 (Sus scrofa - pig) |
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PRKD3 (Chlorocebus sabaeus - green monkey) |
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Prkd3 (Heterocephalus glaber - naked mole-rat) |
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Variants in Prkd3
366 total Variants ![]() |
The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
RH129843 |
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RH131273 |
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alimentary part of gastrointestinal system
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appendage
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circulatory system
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ectoderm
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endocrine system
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endoderm
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exocrine system
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hemolymphoid system
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hepatobiliary system
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integumental system
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mesenchyme
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mesoderm
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nervous system
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renal system
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reproductive system
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respiratory system
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9 | 11 | 49 | 113 | 91 | 90 | 59 | 25 | 59 | 6 | 218 | 97 | 93 | 45 | 60 | 31 |
RefSeq Transcripts | NM_001024263 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_006239629 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006239631 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008764421 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039112128 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039112129 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063261804 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_592820 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | BC092663 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
JAXUCZ010000006 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Ensembl Acc Id: | ENSRNOT00000007492 ⟹ ENSRNOP00000007491 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Ensembl Acc Id: | ENSRNOT00000084528 ⟹ ENSRNOP00000069846 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Ensembl Acc Id: | ENSRNOT00000095865 ⟹ ENSRNOP00000079860 | ||||||||
Type: | CODING | ||||||||
Position: |
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Ensembl Acc Id: | ENSRNOT00000101507 ⟹ ENSRNOP00000077406 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001024263 ⟹ NP_001019434 | ||||||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006239629 ⟹ XP_006239691 | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006239631 ⟹ XP_006239693 | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_039112128 ⟹ XP_038968056 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039112129 ⟹ XP_038968057 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_063261804 ⟹ XP_063117874 | ||||||||
Type: | CODING | ||||||||
Position: |
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Protein RefSeqs | NP_001019434 | (Get FASTA) | NCBI Sequence Viewer |
XP_006239691 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006239693 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038968056 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038968057 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063117874 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAH92663 | (Get FASTA) | NCBI Sequence Viewer |
Ensembl Protein | ENSRNOP00000007491.4 | ||
ENSRNOP00000069846.1 | |||
ENSRNOP00000077406.1 | |||
ENSRNOP00000079860.1 |
RefSeq Acc Id: | NP_001019434 ⟸ NM_001024263 |
- UniProtKB: | A0A8I6G5U2 (UniProtKB/TrEMBL), D4A229 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006239691 ⟸ XM_006239629 |
- Peptide Label: | isoform X1 |
- UniProtKB: | A0A8I6G5U2 (UniProtKB/TrEMBL), D4A229 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006239693 ⟸ XM_006239631 |
- Peptide Label: | isoform X2 |
- UniProtKB: | A0A8I6G5U2 (UniProtKB/TrEMBL) |
- Sequence: |
Ensembl Acc Id: | ENSRNOP00000069846 ⟸ ENSRNOT00000084528 |
Ensembl Acc Id: | ENSRNOP00000007491 ⟸ ENSRNOT00000007492 |
RefSeq Acc Id: | XP_038968057 ⟸ XM_039112129 |
- Peptide Label: | isoform X2 |
- UniProtKB: | A0A8I6G5U2 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038968056 ⟸ XM_039112128 |
- Peptide Label: | isoform X1 |
- UniProtKB: | D4A229 (UniProtKB/TrEMBL), A0A8I6G5U2 (UniProtKB/TrEMBL) |
Ensembl Acc Id: | ENSRNOP00000077406 ⟸ ENSRNOT00000101507 |
Ensembl Acc Id: | ENSRNOP00000079860 ⟸ ENSRNOT00000095865 |
RefSeq Acc Id: | XP_063117874 ⟸ XM_063261804 |
- Peptide Label: | isoform X1 |
- UniProtKB: | D4A229 (UniProtKB/TrEMBL), A0A8I6G5U2 (UniProtKB/TrEMBL) |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-D4A229-F1-model_v2 | AlphaFold | D4A229 | 1-890 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13694361 | ||||||||
Promoter ID: | EPDNEW_R4882 | ||||||||
Type: | initiation region | ||||||||
Name: | Prkd3_2 | ||||||||
Description: | protein kinase D3 | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_R4883 | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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RGD ID: | 13694358 | ||||||||
Promoter ID: | EPDNEW_R4883 | ||||||||
Type: | initiation region | ||||||||
Name: | Prkd3_1 | ||||||||
Description: | protein kinase D3 | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_R4882 | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | RGD:1310236 | AgrOrtholog |
BioCyc Gene | G2FUF-38496 | BioCyc |
Ensembl Genes | ENSRNOG00000005289 | Ensembl, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000007492.8 | UniProtKB/TrEMBL |
ENSRNOT00000084528.2 | UniProtKB/TrEMBL | |
ENSRNOT00000095865.1 | UniProtKB/TrEMBL | |
ENSRNOT00000101507.1 | UniProtKB/TrEMBL | |
Gene3D-CATH | 2.30.29.30 | UniProtKB/TrEMBL |
3.30.60.20 | UniProtKB/TrEMBL | |
Phosphorylase Kinase, domain 1 | UniProtKB/TrEMBL | |
Transferase(Phosphotransferase) domain 1 | UniProtKB/TrEMBL | |
InterPro | C1-like_sf | UniProtKB/TrEMBL |
DAG/PE_bd | UniProtKB/TrEMBL | |
Kinase-like_dom | UniProtKB/TrEMBL | |
PH_like_dom | UniProtKB/TrEMBL | |
Pleckstrin_homology | UniProtKB/TrEMBL | |
Prot_Kinase_C-like_PE/DAG_bd | UniProtKB/TrEMBL | |
Prot_kinase_cat_dom | UniProtKB/TrEMBL | |
Protein_kinase_ATP_BS | UniProtKB/TrEMBL | |
Protein_Kinase_C_mu-related | UniProtKB/TrEMBL | |
Ser/Thr_kinase_AS | UniProtKB/TrEMBL | |
KEGG Report | rno:313834 | UniProtKB/TrEMBL |
NCBI Gene | 313834 | ENTREZGENE |
PANTHER | PKC_mu_like | UniProtKB/TrEMBL |
SERINE/THREONINE-PROTEIN KINASE D3 | UniProtKB/TrEMBL | |
Pfam | C1_1 | UniProtKB/TrEMBL |
PF00169 | UniProtKB/TrEMBL | |
Pkinase | UniProtKB/TrEMBL | |
PhenoGen | Prkd3 | PhenoGen |
PIRSF | PKC_mu_nu_D2 | UniProtKB/TrEMBL |
PRINTS | DAGPEDOMAIN | UniProtKB/TrEMBL |
PROSITE | PH_DOMAIN | UniProtKB/TrEMBL |
PROTEIN_KINASE_ATP | UniProtKB/TrEMBL | |
PROTEIN_KINASE_DOM | UniProtKB/TrEMBL | |
PROTEIN_KINASE_ST | UniProtKB/TrEMBL | |
ZF_DAG_PE_1 | UniProtKB/TrEMBL | |
ZF_DAG_PE_2 | UniProtKB/TrEMBL | |
RatGTEx | ENSRNOG00000005289 | RatGTEx |
SMART | S_TKc | UniProtKB/TrEMBL |
SM00109 | UniProtKB/TrEMBL | |
SM00233 | UniProtKB/TrEMBL | |
Superfamily-SCOP | Kinase_like | UniProtKB/TrEMBL |
PH domain-like | UniProtKB/TrEMBL | |
SSF57889 | UniProtKB/TrEMBL | |
UniProt | A0A8I5ZKA6_RAT | UniProtKB/TrEMBL |
A0A8I6G5U2 | ENTREZGENE, UniProtKB/TrEMBL | |
D4A229 | ENTREZGENE, UniProtKB/TrEMBL | |
Q568X9_RAT | UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2008-03-17 | Prkd3 | protein kinase D3 | Prkcn | protein kinase C, nu | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2005-12-06 | Prkcn | protein kinase C, nu | Prkcn_predicted | protein kinase C, nu (predicted) | Symbol and Name updated | 1559027 | APPROVED |
2005-01-12 | Prkcn_predicted | protein kinase C, nu (predicted) | Symbol and Name status set to approved | 70820 | APPROVED |