Cox7cl1 (cytochrome c oxidase subunit 7C like 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Cox7cl1 (cytochrome c oxidase subunit 7C like 1) Rattus norvegicus
Analyze
Symbol: Cox7cl1 (Ensembl: LOC100360357)
Name: cytochrome c oxidase subunit 7C like 1 (Ensembl:cytochrome c oxidase, subunit VIIc-like)
RGD ID: 2322296
Description: Predicted to be involved in mitochondrial electron transport, cytochrome c to oxygen. Predicted to be part of mitochondrial respiratory chain complex IV.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cytochrome c oxidase subunit 7C, mitochondrial-like; cytochrome c oxidase, subunit VIIc-like; LOC100360357
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8641,055,961 - 41,056,240 (+)NCBIGRCr8
mRatBN7.2635,326,995 - 35,327,273 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl635,326,995 - 35,327,186 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0637,832,588 - 37,832,866 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0650,959,213 - 50,959,491 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4636,115,365 - 36,115,556 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera634,692,450 - 34,692,728 (+)NCBICelera
Cytogenetic Map6q15NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

Genomics


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6141223769Rat
634318Bw118Body weight QTL 1183.55abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)63330954957730294Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63523041780230417Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63207442872227641Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6141223769Rat
1354632Scl29Serum cholesterol level QTL 293.74blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)63509870971636405Rat
1578758Tcas9Tongue tumor susceptibility QTL 93.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)6137618905Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6141223769Rat
738024Sach5Saccharine consumption QTL 53.90.00039consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)6143394190Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6139036266Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6141223769Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6141223769Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6142487980Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6142487980Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat
7411584Foco4Food consumption QTL 44.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6142838846Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)62033877762613667Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61173566972593685Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63330954981132889Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6142487980Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)63443413777102317Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)61653614071636405Rat


Expression


Sequence


RefSeq Acc Id: ENSRNOT00000105882   ⟹   ENSRNOP00000092091
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl635,326,995 - 35,327,186 (+)Ensembl
RefSeq Acc Id: XM_039078181   ⟹   XP_038934109
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8641,055,961 - 41,056,240 (+)NCBI
mRatBN7.2635,326,995 - 35,327,273 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038934109 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000092091.1
RefSeq Acc Id: XP_038934109   ⟸   XM_039078181
- UniProtKB: A0A8I6ADD5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000092091   ⟸   ENSRNOT00000105882

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-38132 BioCyc
Ensembl Genes ENSRNOG00000065320 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000105882.1 UniProtKB/TrEMBL
Gene3D-CATH 4.10.49.10 UniProtKB/TrEMBL
InterPro COX7C/Cox8 UniProtKB/TrEMBL
  COX7C/Cox8_sf UniProtKB/TrEMBL
NCBI Gene 100360357 ENTREZGENE
PANTHER CYTOCHROME C OXIDASE SUBUNIT 7C, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR13313 UniProtKB/TrEMBL
Pfam COX7C UniProtKB/TrEMBL
PhenoGen Cox7cl1 PhenoGen
RatGTEx ENSRNOG00000065320 RatGTEx
Superfamily-SCOP SSF81427 UniProtKB/TrEMBL
UniProt A0A8I6ADD5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Cox7cl1  cytochrome c oxidase subunit 7C like 1  LOC100360357  cytochrome c oxidase, subunit VIIc-like  Symbol and Name Changed 1299863 APPROVED
2010-05-06 LOC100360357  cytochrome c oxidase, subunit VIIc-like      Symbol and Name status set to provisional 70820 PROVISIONAL