Colcr4 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Colcr4 (Colorectal carcinoma resistance QTL4) Rattus norvegicus

Symbol: Colcr4
Name: Colorectal carcinoma resistance QTL4
RGD ID: 1641898
Previously known as: rat Colorectal carcinoma resistance 4; rCcr4
Trait: intestine integrity trait   (VT:0010554)    
Measurement Type: well differentiated malignant colorectal tumor surface area measurement   (CMO:0002077)    
LOD Score: 3.71
P Value: 7.0E-4
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8630,937,632 - 75,937,632RGD_MAPPER_PIPELINE
mRatBN7.2620,338,777 - 62,613,667RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0621,515,302 - 65,784,818RGD_MAPPER_PIPELINERnor_6.0
Rnor_5.0631,405,370 - 75,363,063RGDRnor_5.0
RGSC_v3.4633,021,033 - 64,955,579RGDRGSC_v3.4
RGSC_v3.1633,024,159 - 64,958,705RGD
Cross Type: intercross
Strains Crossed: ACI/SegHsd WF/CrCrli 



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
ACI/SegHsd  (IEA)
WF/CrCrli  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Identification and chromosome mapping of loci predisposing to colorectal cancer that control Wnt/{beta}-catenin pathway and progression of early lesions in the rat. De Miglio MR, etal., Carcinogenesis. 2007 May 17;.
2. Most lung and colon cancer susceptibility genes are pair-wise linked in mice, humans and rats. Quan L, etal., PLoS One. 2011 Feb 24;6(2):e14727.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1560392Gtf3c2general transcription factor IIIC subunit 263091326330941305Rat
1310512Mpv17mitochondrial inner membrane protein MPV1763094169330956389Rat
3929Ucnurocortin63095808630958916Rat
1306453Trim54tripartite motif-containing 5463095930630978475Rat
1307426Dnajc5gDnaJ heat shock protein family (Hsp40) member C5 gamma63098005130984218Rat
1359689Slc30a3solute carrier family 30 member 363098424131004689Rat
1588606Cadcarbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase63101209131035098Rat
1311605Atraidall-trans retinoic acid-induced differentiation factor63103519431039779Rat
69648Slc5a6solute carrier family 5 member 663103986531051671Rat
1586500Tcf23transcription factor 2363111783931126575Rat
2315526Prr30proline rich 3063113502131137534Rat
61929Prebprolactin regulatory element binding63113875731142544Rat
1310988Abhd1abhydrolase domain containing 163114247631147464Rat
620801Cgref1cell growth regulator with EF hand domain 163115179531163801Rat
2966Khkketohexokinase63116524631175779Rat
1311209Emilin1elastin microfibril interfacer 163117591931183657Rat
2300150Ost4oligosaccharyltransferase complex subunit 4, non-catalytic63119119831192422Rat
1598311Agbl5AGBL carboxypeptidase 563119228131213494Rat
11476312Trnay-gua3transfer RNA tyrosine (anticodon GUA) 363121147731211565Rat
401995522LOC134479111uncharacterized LOC13447911163121749131222124Rat
1311324Tmem214transmembrane protein 21463122263531231659Rat
1359297Mapre3microtubule-associated protein, RP/EB family, member 363123373631278626Rat
11517696LOC108351190uncharacterized LOC10835119063124501731247188Rat
11363564LOC108351187uncharacterized LOC10835118763127883031295072Rat
11489826LOC10835118660S ribosomal protein L37 pseudogene63128654431294853Rat
620467Dpysl5dihydropyrimidinase-like 563129503531379348Rat
40940627LOC120103488uncharacterized LOC12010348863131174731318099Rat
41105934LOC120093431small nucleolar RNA SNORA4863141816531418309Rat
1563607Cenpacentromere protein A63142006231431703Rat
402095548LOC134479331uncharacterized LOC13447933163143470131443245Rat
1309228Slc35f6solute carrier family 35, member F663144573831457580Rat
402044264LOC134479332uncharacterized LOC13447933263145768831459847Rat
61997Kcnk3potassium two pore domain channel subfamily K member 363148312931519061Rat
402139649LOC134479333uncharacterized LOC13447933363151877231523195Rat
1584147Cib4calcium and integrin binding family member 463156010531623403Rat
1559683Cimip2cciliary microtubule inner protein 2C63162518731643500Rat
620646Otofotoferlin63164786931744476Rat
1359318Drc1dynein regulatory complex subunit 163174484931779996Rat
1560938Selenoiselenoprotein I63179297231831170Rat
41352920LOC120103489uncharacterized LOC12010348963183136131841998Rat
1305868Adgrf3adhesion G protein-coupled receptor F363185301831864441Rat
620513Hadhbhydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta63187340431907557Rat
620512Hadhahydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha63190780131947434Rat
1597138Garem2GRB2 associated regulator of MAPK1 subtype 263194987731961591Rat
40992611Rbbp4-ps4RB binding protein 4, chromatin remodeling factor, pseudogene 463196188331974703Rat
620879Rab10RAB10, member RAS oncogene family63197485832039554Rat
41285196LOC120103491uncharacterized LOC12010349163206999132077510Rat
621538Kif3ckinesin family member 3C63208687932125812Rat
1304710Asxl2ASXL transcriptional regulator 263209049732234487Rat
41378379LOC120103492uncharacterized LOC12010349263214416632145484Rat
402161689LOC134479373small ribosomal subunit protein bS21m-like63216755032167949Rat
9083598Rpusd4-ps1RNA pseudouridine synthase D4, pseudogene 163218644132190110Rat
1309579Dtnbdystrobrevin, beta63228602232483007Rat
41082100Btf3-ps5basic transcription factor 3, pseudogene 563233563332336757Rat
1303336Dnmt3aDNA methyltransferase 3 alpha63250731632621678Rat
41024468LOC120103494uncharacterized LOC12010349463255641432562306Rat
1565766Yipf4l1Yip1 domain family, member 4 like 163264311632644298Rat
3366Pomcproopiomelanocortin63265913732665175Rat
1310845Efr3bEFR3 homolog B63266459332740417Rat
41181501LOC120103495uncharacterized LOC12010349563269658632700676Rat
1564414Dnajc27DnaJ heat shock protein family (Hsp40) member C2763278821532842418Rat
41044806Cox7b-ps3cytochrome c oxidase subunit 7B, pseudogene 363281236032812599Rat
71009Adcy3adenylate cyclase 363281960232923174Rat
41355253LOC120103497general transcription factor IIH subunit 5-like63282864632833974Rat
1590328Cenpocentromere protein O63292312732937879Rat
1561792Ptrhd1peptidyl-tRNA hydrolase domain containing 163293790432941287Rat
1309046Ncoa1nuclear receptor coactivator 163295209033229829Rat
41192041Trnas-aga24transfer RNA serine (anticodon AGA) 2463308127033081344Rat
401979876LOC134479112uncharacterized LOC13447911263326651333286296Rat
402007155LOC134479114uncharacterized LOC13447911463331716733334652Rat
1590890Itsn2intersectin 263333608633446818Rat
41314820Rpl29-ps6ribosomal protein L29, pseudogene 663339191333392766Rat
1359275Fam228afamily with sequence similarity 228, member A63344742733469553Rat
402012745LOC134479113uncharacterized LOC13447911363346958433479725Rat
2324744Fam228bfamily with sequence similarity 228, member B63347394933505833Rat
1359707Pfn4profilin family, member 463350607733516163Rat
41235940Tp53i3tumor protein p53 inducible protein 363353777933545204Rat
2318878Sf3b6splicing factor 3B, subunit 663354549533554537Rat
61835Fkbp1bFKBP prolyl isomerase 1B63355158333570055Rat
1563701WdcpWD repeat and coiled coil containing63357014533584985Rat
41010483LOC120093289U6 spliceosomal RNA63357428133574387Rat
1561716Mfsd2bMFSD2 lysolipid transporter B, sphingolipid63358962333602477Rat
1589027Ubxn2aUBX domain protein 2A63360380433645958Rat
1566199Atad2bATPase family, AAA domain containing 2B63364607533789532Rat
402290921LOC134479334uncharacterized LOC13447933463380325833807896Rat
1311076Klhl29kelch-like family member 2963380592234110055Rat
41117001LOC120103500uncharacterized LOC12010350063390884733918282Rat
402394759LOC134479335uncharacterized LOC13447933563399917834003283Rat
9118293LOC103692581uncharacterized LOC10369258163411016334152177Rat
41399269LOC120103501uncharacterized LOC12010350163413968934144125Rat
41035754LOC120103502uncharacterized LOC12010350263419435634222342Rat
41256725LOC120093235uncharacterized LOC12009323563449240834494093Rat
40962240LOC120103503uncharacterized LOC12010350363461733334674356Rat
1587970Vrk3-ps1VRK serine/threonine kinase 3, pseudogene 163497026734971605Rat
41242608LOC120103504uncharacterized LOC12010350463569626435721955Rat
41142915Snupn-ps2snurportin 1, pseudogene 263576232435764145Rat
41318895LOC120103506uncharacterized LOC12010350663581913435871592Rat
1590889Rpl13-ps8ribosomal protein L13, pseudogene 863596459435965140Rat
7630115LOC102556100uncharacterized LOC10255610063597910335998480Rat
11391888LOC108351199uncharacterized LOC10835119963610231236114123Rat
7683264LOC102556187uncharacterized LOC10255618763629103636363330Rat
7716193Tdrd15tudor domain containing 1563646128436537455Rat
2129Apobapolipoprotein B63656370436603300Rat
6500147Ccnf-ps2cyclin F, pseudogene 263661041636614244Rat
9474178LOC103692595uncharacterized LOC10369259563665407836801338Rat
1311648Ldahlipid droplet associated hydrolase63680135936885929Rat
620105Gdf7growth differentiation factor 763689079936901783Rat
1311331Hs1bp3HCLS1 binding protein 363691186436942126Rat
401994012LOC134479336uncharacterized LOC13447933663693605036940044Rat
41376624LOC120103507uncharacterized LOC12010350763694498636955341Rat
7724923LOC102550373uncharacterized LOC10255037363695509136977123Rat
41247007LOC120103508uncharacterized LOC12010350863704999237071376Rat
621309Rhobras homolog family member B63708303037085204Rat
11426161LOC108351200uncharacterized LOC10835120063709333037112670Rat
1560726Slc7a15solute carrier family 7 (cationic amino acid transporter, y+ system), member 1563712301937135601Rat
1311024Pum2pumilio RNA-binding family member 263718213037262223Rat
3648Sdc1syndecan 163728204137304503Rat
2322698Rps21-ps6ribosomal protein S21, pseudogene 663741228037412976Rat
735179Laptm4alysosomal protein transmembrane 4 alpha63743850337456238Rat
1305085Matn3matrilin 363746772937487776Rat
40959945LOC120103509uncharacterized LOC12010350963749011537490588Rat
1564116Wdr35WD repeat domain 3563749055737550391Rat
1585566Ttc32tetratricopeptide repeat domain 3263755362837560227Rat
1588772Hnrnpa1-ps37heterogeneous nuclear ribonucleoprotein A1, pseudogene 3763759326037599261Rat
402132086LOC134479337uncharacterized LOC13447933763777064337866966Rat
402382648LOC134479338uncharacterized LOC13447933863788513537938552Rat
41365188LOC120103510uncharacterized LOC12010351063789584437912194Rat
1311807Osr1odd-skipped related transcription factor 163808868838100010Rat
11455275LOC108351357uncharacterized LOC10835135763822553738233289Rat
41135996LOC120103511uncharacterized LOC12010351163855919038564901Rat
402268215LOC134479278U1 small nuclear ribonucleoprotein 70 kDa-like63864250438719512Rat
402104349LOC134479339large ribosomal subunit protein eL38-like63885605738860987Rat
1309705Nt5c1b5'-nucleotidase, cytosolic IB63885818238875610Rat
1565196Rdh14retinol dehydrogenase 1463887569338880836Rat
41370558LOC120103512uncharacterized LOC12010351263897473539044631Rat
41281285LOC120103513uncharacterized LOC12010351363915296539170289Rat
6494941Parl-ps7presenilin associated, rhomboid-like, pseudogene 763950069639501781Rat
621527Kcns3potassium voltage-gated channel, modifier subfamily S, member 363952741039584105Rat
1587516Msgn1mesogenin 163963186839632508Rat
1559792Gen1GEN1 Holliday junction 5' flap endonuclease63966667539697480Rat
7591084LOC102547959uncharacterized LOC10254795963967862039686496Rat
1311214Smc6structural maintenance of chromosomes 663969781039752275Rat
3966Vsnl1visinin-like 163975772139878556Rat
1583700Mrps10-ps1mitochondrial ribosomal protein S10, pseudogene 163989722039897811Rat
2322652Rad51ap2RAD51 associated protein 263990125139908203Rat
402377562LOC134479340uncharacterized LOC13447934064005890640067246Rat
1586345Hspa8-ps25heat shock protein family A (Hsp70) member 8, pseudogene 2564035307240355183Rat
41331744LOC120093456small nucleolar RNA SNORA1764049850340498628Rat
1586329Hat1-ps1histone acetyltransferase 1, pseudogene 164057150540573169Rat
1586335Rpl27l8ribosomal protein L27 like 864059676740597207Rat
1305961CyriaCYFIP related Rac1 interactor A64077416540883005Rat
2322296Cox7cl1cytochrome c oxidase subunit 7C like 164105596141056240Rat
402271500LOC134479279uncharacterized LOC13447927964116726641171032Rat
402076791LOC134479280uncharacterized LOC13447928064117107341193085Rat
402161456LOC134479117uncharacterized LOC13447911764121319641257589Rat
1565679Rpl27a-ps14ribosomal protein L27a, pseudogene 1464123022841230708Rat
402058830LOC134479116small ribosomal subunit protein uS8-like64126346241265492Rat
11364133Trnav-uac3transfer RNA valine (anticodon UAC) 364130914641309218Rat
41335282LOC120093419small nucleolar RNA SNORA1564132620841326334Rat
1584995MycnMYCN proto-oncogene, bHLH transcription factor64144668341452584Rat
9410455Rps16-ps1ribosomal protein S16, pseudogene 164145968441460415Rat
402012443LOC134479281uncharacterized LOC13447928164152429841533086Rat
619903Ddx1DEAD-box helicase 164172536541756236Rat
402401775LOC134479115large ribosomal subunit protein eL8-like64175153641752614Rat
1585140NbasNBAS subunit of NRZ tethering complex64177725342081895Rat
11488723LOC108351202ferritin light chain 1 pseudogene64187530041878140Rat
41070163LOC120103514uncharacterized LOC12010351464194128741944479Rat
41388044LOC120103515uncharacterized LOC12010351564211038542119973Rat
402120230LOC134479343uncharacterized LOC13447934364218853142191856Rat
1585125Morf4l1-ps9mortality factor 4 like 1, pseudogene 964231723642318041Rat
11498460LOC108351358uncharacterized LOC10835135864239873742418863Rat
1305779Lratd1LRAT domain containing 164264651542650988Rat
402204098LOC134479342uncharacterized LOC13447934264264873542910638Rat
402010547LOC134479341glyceraldehyde-3-phosphate dehydrogenase-like64268028242689136Rat
2319366Fbxw2-ps2F-box and WD repeat domain containing 2, pseudogene 264293999842943495Rat
402228051LOC134479344uncharacterized LOC13447934464296586642969016Rat
7715436LOC102555226uncharacterized LOC10255522664314538743164009Rat
11498435LOC108351205uncharacterized LOC10835120564330184043339216Rat
41258020LOC120103517uncharacterized LOC12010351764333923043425975Rat
11377656LOC108351206uncharacterized LOC10835120664337069443449351Rat
1584006Eif3b-ps1eukaryotic translation initiation factor 3, subunit B, pseudogene 164358482143587086Rat
41075541Trnaa-ggc4transfer RNA alanine (anticodon GGC) 464368020043680280Rat
1583858Tdg-ps2thymine-DNA glycosylase, pseudogene 264377939143780570Rat
7515781LOC102556604uncharacterized LOC10255660464390085244008142Rat
7557098LOC102555705uncharacterized LOC10255570564406219244076896Rat
41343564LOC120103518uncharacterized LOC12010351864424437944248193Rat
1564451Trib2tribbles pseudokinase 264427476244299139Rat
402297037LOC134479345uncharacterized LOC13447934564442241044450814Rat
7657676LOC102555864uncharacterized LOC10255586464445081944457643Rat
7500641LOC102555927uncharacterized LOC10255592764450770444557226Rat
2321713Rpl11-ps2ribosomal protein L11, pseudogene 264464945544649982Rat
40932412LOC120093236uncharacterized LOC12009323664491398144915723Rat
7501955LOC102550954uncharacterized LOC10255095464498241145022358Rat
1307646Lpin1lipin 164503911045145845Rat
70962Ntsr2neurotensin receptor 264515309545159783Rat
1564091Greb1growth regulating estrogen receptor binding 164516928945321973Rat
631412E2f6E2F transcription factor 664532099345337437Rat
3590Rock2Rho-associated coiled-coil containing protein kinase 264540782345502773Rat
1306818Slc66a3solute carrier family 66 member 364550354145515293Rat
1582838Cimip5ciliary microtubule inner protein 564552057545525810Rat
402324477LOC134479346uncharacterized LOC13447934664552574345528469Rat
631414Kcnf1potassium voltage-gated channel modifier subfamily F member 164569102845693706Rat
628688Pdia6protein disulfide isomerase family A, member 664579170445808947Rat
1359430Atp6v1c2ATPase H+ transporting V1 subunit C264580926945872914Rat
1359447Nol10nucleolar protein 1064586177345954067Rat
1561890Cfdp1l1craniofacial development protein 1 like 164598338345984583Rat
1597342Psme3-ps2proteasome activator subunit 3, pseudogene 264599889645999952Rat
3227Odc1ornithine decarboxylase 164605843946065148Rat
41218949Snora80bsmall nucleolar RNA, H/ACA box 80B64605984746059980Rat
402357388LOC134479118uncharacterized LOC13447911864608129546083829Rat
402369251LOC134479347uncharacterized LOC13447934764611296446119768Rat
41299246Trnav-aac13transfer RNA valine (anticodon AAC) 1364614463946144719Rat
41314300Ptma-ps3prothymosin alpha, pseudogene 364614970646152012Rat
40979901LOC12009323860S ribosomal protein L35-like64615234146153099Rat
708375Hpcal1hippocalcin-like 164620680946313364Rat
402032881LOC134479348uncharacterized LOC13447934864632826646330435Rat
402280070LOC134479349uncharacterized LOC13447934964634121346347360Rat
1305263Asap2ArfGAP with SH3 domain, ankyrin repeat and PH domain 264638660546549669Rat
41082662LOC120093281U6 spliceosomal RNA64645627346456379Rat
1307810Itgb1bp1integrin subunit beta 1 binding protein 164654999446564735Rat
1305767Cpsf3cleavage and polyadenylation specific factor 364656485546592776Rat
41210651LOC120093425small nucleolar RNA SNORA2164656637346566501Rat
727866Iah1isoamyl acetate hydrolyzing esterase 164659417746601394Rat
620404Adam17ADAM metallopeptidase domain 1764660158346663690Rat
41040147LOC120093315U6 spliceosomal RNA64663018246630283Rat
41197514LOC1200932755S ribosomal RNA64665156646651684Rat
3979Ywhaqtyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta64666435846694875Rat
402227551LOC134479119uncharacterized LOC13447911964669789846754873Rat
402112058LOC134479120uncharacterized LOC13447912064670633246747191Rat
1596058Taf1bTATA-box binding protein associated factor, RNA polymerase I subunit B64684557146923209Rat
7731406Rbm34-ps1RNA binding motif protein 34, pseudogene 164687970046882298Rat
1305735Grhl1grainyhead-like transcription factor 164693594746986126Rat
1306646Klf11KLF transcription factor 1164701431247026152Rat
1596023Cys1cystin 164702944047046671Rat
1598310Rrm2ribonucleotide reductase regulatory subunit M264704475547075370Rat
41153839LOC120093240uncharacterized LOC12009324064710601547116923Rat
402118393LOC134479350uncharacterized LOC13447935064719008647199671Rat
1305798Mboat2membrane bound O-acyltransferase domain containing 264719975147326215Rat
619949Kidins220kinase D-interacting substrate 22064734679047435599Rat
41007282LOC120093241ubiquinol-cytochrome-c reductase complex assembly factor 3-like64745390847454374Rat
2859Id2inhibitor of DNA binding 264746916247470995Rat
402234965LOC134479282uncharacterized LOC13447928264748570847489898Rat
7526561LOC102553989uncharacterized LOC10255398964756330747583659Rat
9103871LOC103692605uncharacterized LOC10369260564763424447646175Rat
9329158Ndufa5-ps2NADH:ubiquinone oxidoreductase subunit A5, pseudogene 264765968647660026Rat
7629645LOC102554202uncharacterized LOC10255420264767428747697199Rat
402036770LOC134479351uncharacterized LOC13447935164767698447682872Rat
7536096LOC102557053uncharacterized LOC10255705364777539547848006Rat
41346264LOC120093242uncharacterized LOC12009324264799421648012026Rat
41088761LOC120093243uncharacterized LOC12009324364813444148140286Rat
1583774Phgdh-ps6phosphoglycerate dehydrogenase, pseudogene 664846456148465969Rat
1561737Rnf144aring finger protein 144A64862824148748241Rat
402063905LOC134479352uncharacterized LOC13447935264874829548755396Rat
620495Rsad2radical S-adenosyl methionine domain containing 264877498548788245Rat
1305881Cmpk2cytidine/uridine monophosphate kinase 264880215048813652Rat
11370295LOC108351213uncharacterized LOC10835121364894904448982305Rat
6501114Pgam1-ps2phosphoglycerate mutase 1, pseudogene 264919415949194892Rat
11384778LOC108351214uncharacterized LOC10835121464941162849437727Rat
2318102Silc1sciatic injury induced lincRNA upregulator of SOX1164953498049553789Rat
69351Sox11SRY-box transcription factor 1164973677349738794Rat
2324519Ube2e1-ps1ubiquitin-conjugating enzyme E2E 1, pseudogene 164985344749854088Rat
402315986LOC134479283cAMP-dependent protein kinase inhibitor gamma-like64994243349944948Rat
41387415LOC120093459small nucleolar RNA SNORA1765003098150031111Rat
9422695LOC103692606uncharacterized LOC10369260665022216050226572Rat
11407553LOC108351362uncharacterized LOC10835136265029008550296732Rat
41264357LOC120093466small nucleolar RNA SNORA1765041720750417338Rat
41262445LOC120093439small nucleolar RNA SNORA1765067694350677077Rat
41119779LOC120093290U6 spliceosomal RNA65071893450719040Rat
2322612Npm1-ps19nucleophosmin 1, pseudogene 1965080187450803067Rat
1564913Akr1b1-ps1aldo-keto reductase family 1, member B1 (aldose reductase), pseudogene 165081670150819164Rat
1559651Dcdc2cdoublecortin domain containing 2C65083240750907437Rat
621804Allcallantoicase65090757550942665Rat
41178284LOC120093293U6 spliceosomal RNA65093583850935941Rat
1309678Colec11collectin sub-family member 1165095235750984845Rat
61907Rps7ribosomal protein S765099458150999447Rat
402427254LOC134479353uncharacterized LOC13447935365100468851011275Rat
1309012Rnaseh1ribonuclease H165101124451020638Rat
727828Adi1acireductone dioxygenase 165103526751042229Rat
1566054Trappc12trafficking protein particle complex subunit 1265104987851115343Rat
1305817Eipr1EARP complex and GARP complex interacting protein 165111682751230453Rat
7747059LOC102555103uncharacterized LOC10255510365152465651563196Rat
7502861LOC102555048uncharacterized LOC10255504865156325551651059Rat
7690279LOC102554981uncharacterized LOC10255498165181968751839464Rat
402288820LOC134479356uncharacterized LOC13447935665189143851892752Rat
620550Myt1lmyelin transcription factor 1-like65189285852291830Rat
402439676LOC134479355uncharacterized LOC13447935565201294452015729Rat
402357852LOC134479354uncharacterized LOC13447935465205739952213180Rat
1560694Pxdnperoxidasin65230834752385943Rat
3900Tpothyroid peroxidase65242599852495793Rat
1311276Sntg2syntrophin, gamma 265252948152730972Rat
402231027LOC134479357uncharacterized LOC13447935765260161952608883Rat
402330140LOC134479358uncharacterized LOC13447935865276637952773858Rat
1596936Prdx1-ps5peroxiredoxin 1, pseudogene 565279630152800383Rat
41273085LOC120103519uncharacterized LOC12010351965291237452934988Rat
1359389Tmem18transmembrane protein 1865293441952941868Rat
1587117Alkal2ALK and LTK ligand 265322320453232794Rat
2020Acp1acid phosphatase 165323393753249576Rat
402345372LOC134479359uncharacterized LOC13447935965323490953238830Rat
1306440Sh3yl1SH3 and SYLF domain containing 165325003653293406Rat
1585983Hirip3-ps1HIRA interacting protein 3, pseudogene 165330331853305732Rat
40977559LOC120093438small nucleolar RNA SNORA1765335267353352805Rat
1564713Fam110cfamily with sequence similarity 110, member C65336601353372270Rat
41147221Lamb2-ps1laminin subunit beta 2, pseudogene 165342488253538994Rat
9288946LOC103692609serine palmitoyltransferase small subunit A pseudogene65353976653540276Rat
1306311Lamb1laminin subunit beta 165356284953630118Rat
735073Dlddihydrolipoamide dehydrogenase65363168653655059Rat
620623Slc26a3solute carrier family 26 member 365375141553792300Rat
1310703Cbll1Cbl proto-oncogene like 165379871253812890Rat
7499548LOC102555378uncharacterized LOC10255537865381278053843163Rat
3293Slc26a4solute carrier family 26 member 465383510253873968Rat
11492151LOC108351220uncharacterized LOC10835122065389707253901732Rat
1359431Bcap29B-cell receptor-associated protein 2965391020953950206Rat
402207861LOC134479362uncharacterized LOC13447936265395028253952907Rat
1311445Dus4ldihydrouridine synthase 4-like65395560953970050Rat
1563296Cog5component of oligomeric golgi complex 565396996754267869Rat
1310848Gpr22G protein-coupled receptor 2265403799854044994Rat
620444Hbp1HMG-box transcription factor 165425711854283373Rat
402401012LOC134479361large ribosomal subunit protein eL20-like65427040954272759Rat
3394Prkar2bprotein kinase cAMP-dependent type II regulatory subunit beta65429114354381639Rat
41021534U1l1U1 spliceosomal RNA like 165439407754394224Rat
402198615LOC134479360uncharacterized LOC13447936065448222254494742Rat
1306468Pik3cgphosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma65449424754529563Rat
41158901LOC120103521uncharacterized LOC12010352165450857754515965Rat
2320310Calm2-ps3calmodulin 2, pseudogene 365460264754605313Rat
41344174LOC120093495U4 spliceosomal RNA65468480754684934Rat
1560812Ccdc71lcoiled-coil domain containing 71-like65468747454691566Rat
2321896Nxt2-ps1nuclear transport factor 2-like export factor 2, pseudogene 165474160254742124Rat
402388858LOC134479363uncharacterized LOC13447936365502432255032127Rat
1598099Car13-ps2carbonic anhydrase 13, pseudogene 265512362155127694Rat
40944820LOC120093433small nucleolar RNA SNORA4865514097155141114Rat
631365Namptnicotinamide phosphoribosyltransferase65515275655189547Rat
41143542Metrnl-ps1meteorin-like, glial cell differentiation regulator, pseudogene 165526872755271041Rat
41201218Ccdc69-ps1coiled-coil domain containing 69, pseudogene 165527104455271593Rat
41060377Hexim2-ps1HEXIM P-TEFb complex subunit 2, pseudogene 165527208655273556Rat
7542438LOC102547473uncharacterized LOC10254747365528021155292800Rat
1359569Sypl1synaptophysin-like 165529255555311519Rat
41266620LOC120093480U6atac minor spliceosomal RNA65533263055332748Rat
1591286Cdhr3cadherin-related family member 365536921555429454Rat
402112689LOC134479364uncharacterized LOC13447936465543918455442513Rat
7719070LOC102547703uncharacterized LOC10254770365545689455487271Rat
1305730Atxn7l1ataxin 7-like 165548730955709751Rat
7563724LOC102549100uncharacterized LOC10254910065563096155646526Rat
1307943Efcab10EF-hand calcium binding domain 1065573190255738821Rat
11378331LOC108351223uncharacterized LOC10835122365574225555754534Rat
402372419LOC134479122transcription initiation factor TFIID subunit 3-like65575864655766303Rat
1307824Polr1fRNA polymerase I subunit F65578070655797935Rat
41186807LOC120093447small nucleolar RNA SNORA1765581879555818923Rat
1595482Tomm70-ps1translocase of outer mitochondrial membrane 70, pseudogene 165585232855854571Rat
6486238Rpsa-ps12ribosomal protein SA, pseudogene 1265587547355877092Rat
41134593LOC120093452small nucleolar RNA SNORA1765590639555906522Rat
402285214LOC134479365uncharacterized LOC13447936565599612356002114Rat
402269794LOC134479366uncharacterized LOC13447936665611488756125437Rat
1595449Rps20-ps6ribosomal protein S20, pseudogene 665636368856364100Rat
1311812Ferd3lFer3-like bHLH transcription factor65637277856373667Rat
41169746Pin4-ps3peptidylprolyl cis/trans isomerase, NIMA-interacting 4, pseudogene 365637534756375743Rat
621455Twist1twist family bHLH transcription factor 165640230956404303Rat
41104462LOC120093244uncharacterized LOC12009324465647247356482050Rat
1594139Dppa4-ps4developmental pluripotency-associated 4, pseudogene 465647264156473384Rat
1310748Hdac9histone deacetylase 965648947257351654Rat
40966473LOC120093437small nucleolar RNA SNORA1765733983257339963Rat
1306328Prps1l1phosphoribosyl pyrophosphate synthetase 1-like 165741233157414021Rat
1309778Snx13sorting nexin 1365747813957589624Rat
1592964Hsp90b1-ps2heat shock protein 90 beta family member 1, pseudogene 265773928957744008Rat
2074Ahraryl hydrocarbon receptor65796142357998901Rat
7734313LOC102554773uncharacterized LOC10255477365800320058035905Rat
1598279Gapdh-ps5Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 565808408158085215Rat
1565406Agr3anterior gradient 3, protein disulphide isomerase family member65837070158393944Rat
1304606Agr2anterior gradient 2, protein disulphide isomerase family member65843590858456678Rat
1311788Tspan13tetraspanin 1365846605158492804Rat
402124717LOC134479367uncharacterized LOC13447936765849319358497446Rat
621507Bzw2basic leucine zipper and W2 domains 265855536258615921Rat
1306017Ankmy2ankyrin repeat and MYND domain containing 265861625158657634Rat
7502513Nono-ps3non-POU domain containing, octamer-binding, pseudogene 365862845358634195Rat
1560395Lrrc72leucine rich repeat containing 7265866261158722844Rat
41110432Max-ps2MYC associated factor X, pseudogene 265867167558677591Rat
11382383Rps26-ps5ribosomal protein S26, pseudogene 565872304258723848Rat
628877Sostdc1sclerostin domain containing 165877862358782797Rat
41059523LOC120093435small nucleolar RNA SNORA4865879742058797559Rat
40986010LOC120093463small nucleolar RNA SNORA1765884400158844117Rat
1359368CrppaCDP-L-ribitol pyrophosphorylase A65884755059124309Rat
9299213Chchd2l2-ps4coiled-coil-helix-coiled-coil-helix domain containing protein 2-like 2, pseudogene 465902564259038400Rat
40964578Hnrnpa1-ps2heterogeneous nuclear ribonucleoprotein A1, pseudogene 265942575259427266Rat
41195695LOC120093493small nucleolar RNA U365953551059535592Rat
3079Meox2mesenchyme homeobox 265958402559644722Rat
2319740Exosc-ps1exosome component 4, pseudogene 165967811159678989Rat
1312038Agmoalkylglycerol monooxygenase65971349560044851Rat
41165480LOC120093298U6 spliceosomal RNA65995420559954309Rat
11398630LOC108351227uncharacterized LOC10835122766007028860110392Rat
11518989LOC108351363uncharacterized LOC10835136366011046460111945Rat
1563613Rps25l2ribosomal protein S25 like 266024858660249000Rat
2488Dgkbdiacylglycerol kinase, beta66036810161124420Rat
7669283Actg1-ps1actin, gamma 1, pseudogene 166044841460449511Rat
9263034LOC103692620thyroid hormone receptor-associated protein 3 pseudogene66055842660563895Rat
402454282LOC134479368uncharacterized LOC13447936866105061961051720Rat
2323883Pebp1-ps2phosphatidylethanolamine binding protein 1, pseudogene 266126746761268024Rat
1312007Etv1ETS variant transcription factor 166131683661408985Rat
41312804Rplp0-ps9ribosomal protein lateral stalk subunit P0, pseudogene 966141323861414011Rat
41157524LOC120103524uncharacterized LOC12010352466168396561776668Rat
41034983LOC120093442small nucleolar RNA SNORA1766212680162126932Rat
2323695St13-ps2ST13, Hsp70 interacting protein, pseudogene 266216237562164007Rat
1305611Smarce1-ps10SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, pseudogene 1066223158162232920Rat
41392365LOC120093451small nucleolar RNA SNORA1766231208662312209Rat
41025079LOC120093443U2 spliceosomal RNA66232727162327446Rat
41263556LOC120093490U2 spliceosomal RNA66235666262356816Rat
1560073Rps10-ps21ribosomal protein S10, pseudogene 2166239623262396786Rat
40972876LOC12009324760S ribosomal protein L29-like66261553563229431Rat
1588211Phb2-ps3prohibitin 2, pseudogene 366270990962713904Rat
2152Arl4aARF like GTPase 4A66280928762811297Rat
735034Scinscinderin66283664162915287Rat
1587073Lsmem1leucine-rich single-pass membrane protein 166297888062988750Rat
2867Ifrd1interferon-related developmental regulator 166299656063044996Rat
1583856Zfp277zinc finger protein 27766311060963239941Rat
41008057LOC120093202uncharacterized LOC12009320266323629363236696Rat
1561724Dock4dedicator of cytokinesis 466324005063629772Rat
2323665Immp2linner mitochondrial membrane peptidase subunit 266379718964696906Rat
2323872H3f3l1H3.3 histone like 166382724863828885Rat
7500279LOC102552766uncharacterized LOC10255276666387792863913463Rat
41339141LOC120093204uncharacterized LOC12009320466392410064035477Rat
40934694LOC120093461small nucleolar RNA SNORA1766412330364123435Rat
41334056LOC120093203uncharacterized LOC12009320366414184264157856Rat
71066Lrrn3leucine rich repeat neuronal 366421616464247293Rat
402139798LOC134479121uncharacterized LOC13447912166452860064546203Rat
41268906LOC120103525uncharacterized LOC12010352566513063465152262Rat
1589745Ndufa10l1NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 10-like 166560686665608299Rat
401993298LOC134479369uncharacterized LOC13447936966562509965625727Rat
9072809LOC103692621oligosaccharyltransferase complex subunit OSTC pseudogene66615837866180319Rat
41279995LOC120093283U6 spliceosomal RNA66633464266334748Rat
402439144LOC134479370uncharacterized LOC13447937066668843366700907Rat
402425498LOC134479371uncharacterized LOC13447937166675657666841502Rat
402049990LOC134479372uncharacterized LOC13447937266694479966965375Rat
3070Dnajb9DnaJ heat shock protein family (Hsp40) member B966699784267007371Rat
41003040LOC120103526uncharacterized LOC12010352666700079267008036Rat
1583553Dnajb6-ps4DnaJ heat shock protein family (Hsp40) member B6, pseudogene 466702469767025972Rat
1311444Pnpla8patatin-like phospholipase domain containing 866705678367118714Rat
3209Nrcamneuronal cell adhesion molecule66712972367425510Rat
41173563LOC120093276U6 spliceosomal RNA66748652467486630Rat
1598017Gpatch4-ps1G patch domain-containing protein 4, pseudogene 166752966867530911Rat
11407073LOC108351229transformer-2 protein homolog alpha pseudogene66756797167568535Rat
1598278Eno1-ps32enolase 1, pseudogene 3266757359767574880Rat
1583855Gapdh-ps92Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 9266759279567593905Rat
1306117Stxbp6syntaxin binding protein 666764772167884369Rat
41192509LOC120093462small nucleolar RNA SNORA1766792055867920685Rat
40950765LOC120093319U7 small nuclear RNA66811341468113472Rat
41372374LOC120093491U2 spliceosomal RNA66824649368246631Rat
402364174LOC134479123glyceraldehyde-3-phosphate dehydrogenase-like66825194268255230Rat
7593102LOC102555380uncharacterized LOC10255538066826702968281744Rat
7652149LOC102555435uncharacterized LOC10255543566829929468308694Rat
9317184LOC103692627uncharacterized LOC10369262766832903368376313Rat
11450428LOC108351230uncharacterized LOC10835123066833383068342273Rat
402003426LOC134479375uncharacterized LOC13447937566834484568356931Rat
402054858LOC134479374uncharacterized LOC13447937466835609368367667Rat
402259229LOC134479376uncharacterized LOC13447937666841058668509720Rat
41268372LOC120093449small nucleolar RNA SNORA1766858620668586333Rat
402061647LOC134479377uncharacterized LOC13447937766859329768601370Rat
402421690LOC134479378uncharacterized LOC13447937866871646468733843Rat
41195602LOC120093317small nucleolar RNA SNORA73 family66878225868782461Rat
402087222LOC134479379uncharacterized LOC13447937966916708669259780Rat
621345Nova1NOVA alternative splicing regulator 166950698369632437Rat
41200290LOC120093485U2 spliceosomal RNA67023999270240206Rat
41328288LOC120093502U4 spliceosomal RNA67042256270422702Rat
40947446LOC120093250uncharacterized LOC12009325067047590570505926Rat
40951447LOC120103529uncharacterized LOC12010352967067149570699913Rat
7725900LOC102556158uncharacterized LOC10255615867076148370861151Rat
1598277Kpna1-ps3karyopherin subunit alpha 1, pseudogene 367115075171152586Rat
41004139LOC120093468small nucleolar RNA SNORA1767156195071562080Rat
1334065Or5ak28-ps1olfactory receptor family 5 subfamily AK member 28, pseudogene 167194073071941383Rat
2320031LOC100364934Leydig cell tumor 10 kDa protein-like67206379072064700Rat
401996914LOC134479380uncharacterized LOC13447938067234035672400343Rat
2323500Phgdh-ps1phosphoglycerate dehydrogenase, pseudogene 167236808272369326Rat
1559629Atp5mc1l2ATP synthase membrane subunit c locus 1 like 267238108172381479Rat
2619Foxg1forkhead box G167240158272404392Rat
7619249LOC102546421uncharacterized LOC10254642167240750572424612Rat
41172264LOC120103531uncharacterized LOC12010353167241145172418800Rat
40997044LOC120093455small nucleolar RNA SNORA1767258098972581116Rat
41135267LOC120093458small nucleolar RNA SNORA1767261686072616987Rat
7627887LOC102546496uncharacterized LOC10254649667263797472664321Rat
9219694LOC103692628uncharacterized LOC10369262867273124972790949Rat
41302933Gapdh-ps90Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 9067313202773133328Rat
402403943LOC134479381uncharacterized LOC13447938167338583873445533Rat
620964Prkd1protein kinase D167346064073774433Rat
41257709LOC120103532uncharacterized LOC12010353267353040873604306Rat
7728058LOC102557478uncharacterized LOC10255747867418001774241144Rat
41010064LOC120093251uncharacterized LOC12009325167430452574307327Rat
41350299LOC120093284U6 spliceosomal RNA67436327874363385Rat
402172173LOC134479382uncharacterized LOC13447938267437923174383663Rat
402412078LOC134479383uncharacterized LOC13447938367448240774487638Rat
1310263G2e3G2/M-phase specific E3 ubiquitin protein ligase67449880174530703Rat
619828Scfd1sec1 family domain containing 167453122574609463Rat
1587060Ube2i-ps3ubiquitin-conjugating enzyme E2I, pseudogene 367453944974540831Rat
402253861LOC134479180uncharacterized LOC13447918067459218874602070Rat
2323296Snrnp48-ps2small nuclear ribonucleoprotein U11/U12 subunit 48, pseudogene 267467066674683833Rat
41281687Arl1-ps1ADP-ribosylation factor like GTPase 1, pseudogene 167469092474697539Rat
1308536Cochcochlin67476648574780504Rat
621827Strn3striatin 367478315674869473Rat
1311990Ap4s1adaptor related protein complex 4 subunit sigma 167486374274916907Rat
1561653Hectd1HECT domain E3 ubiquitin protein ligase 167491680375003408Rat
41293354LOC120103536uncharacterized LOC12010353667493428674937448Rat
402287122LOC134479181uncharacterized LOC13447918167494960674970993Rat
1561116Heatr5aHEAT repeat containing 5A67505722675155207Rat
402128941LOC134479124uncharacterized LOC13447912467515456075155246Rat
1309138Dtd2D-aminoacyl-tRNA deacylase 267518549675191774Rat
1306830Gpr33-ps1G protein-coupled receptor 33, pseudogene 167520977675210781Rat
1307232NubplNUBP iron-sulfur cluster assembly factor, mitochondrial67529460975516603Rat
11440663LOC108351235tensin-2 pseudogene67533011375341319Rat
1595110Cers5-ps1ceramide synthase 5, pseudogene 167555920175565413Rat
402430640LOC134479384uncharacterized LOC13447938467560364575608154Rat
1308507Arhgap5Rho GTPase activating protein 567571119975774636Rat
41103385Rnu6-8RNA, U6 small nuclear 867580371275803818Rat
40945147LOC120093279U6 spliceosomal RNA67580439975804505Rat
69412Akap6A-kinase anchoring protein 667591935076359667Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
33828D6Mit915863902850139028659Ratregion
33977D6Mit424666345744163457687Ratregion
34184D6Mgh1116365368492153685084Ratregion
11488D6Arb721963975863039758849Ratregion
37222D6Rat8221764871328748713504Ratregion
35396D6Rat3516864016318340163351Ratregion
35447D6Rat5117564952898849529163Ratregion
35531D6Rat3815163975859839758749Ratregion
37046D6Rat5211764114368141143798Ratregion
37662D6Rat9226964540022445400493Ratregion
37746D6Rat9622364428084444281067Ratregion
37972D6Rat6419065835950958359699Ratregion
36452D6Rat2513466303731963037453Ratregion
36534D6Rat3216564737833947378504Ratregion
36560D6Rat3417264544329445443466Ratregion
36648D7Rat3817166480327464803445Ratregion
34835D6Rat2811864605060746050725Ratregion
35036D6Rat2412266720787267207994Ratregion
35583D6Rat5017166701088967011060Ratregion
35631D6Rat13715764885800348858160Ratregion
35911D6Rat3320664515378645153992Ratregion
39848D6Rat14315364259755942597712Ratregion
39924D6Rat14120764448027044480477Ratregion
39972D6Rat13222765654583756546064Ratregion
38220D6Rat6723564828760748287842Ratregion
40412D6Rat17614863363648533636633Ratregion
38422D6Rat8421263957114639571358Ratregion
38758D6Rat8314464598608545986229Ratregion
40206D6Rat15516665093089250931058Ratregion
40220D6Rat15614163266642532666566Ratregion
40240D6Rat13312965460132454601453Ratregion
38930D6Rat6124964830361048303859Ratregion
39022D6Rat6021365770406957704282Ratregion
39340D6Rat7321067518441175184621Ratregion
39572D6Rat14011864615963046159748Ratregion
42778D6Rat17113063298108932981219Ratregion
42779D6Rat22824264085795740858199Ratregion
42781D6Rat20722364729108947291312Ratregion
42782D6Rat20621465320157253201786Ratregion
42784D6Rat20124067008429570084535Ratregion
42785D6Rat16817166190109561901266Ratregion
42786D6Rat16920366876727068767473Ratregion
42787D6Rat20211166473845464738565Ratregion
42788D6Rat20421966708945167089670Ratregion
42789D6Rat20324866622911666229364Ratregion
42792D6Rat19921167551020975510420Ratregion
41444D6Rat13117865959745259597630Ratregion
42324D6Rat22324463406434934064593Ratregion
42325D6Rat22123067095005770950287Ratregion
40770D6Rat13924564536280745363052Ratregion
41006D6Rat13623265262526852625500Ratregion
41064D6Rat13419565343753553437730Ratregion
41608D6Rat14226864764081347641081Ratregion
41668D6Rat17023965127524151275480Ratregion
41820D6Rat22213663560587635606012Ratregion
44079D6Got6423565592328555923520Ratregion
44080D6Got618365504743655047519Ratregion
44035D6Got1720563159341231593617Ratregion
44048D6Wox19063346876533468855Ratregion
44059D6Got3825464134963941349893Ratregion
44067D6Got4912064631135946311479Ratregion
60530D6Got2515563284019932840354Ratregion
60531D6Got2728363725903837259321Ratregion
60542D6Got4620364530051845300721Ratregion
60544D6Got5124664747695547477201Ratregion
62493D6Uia216463246120832461372Ratregion
62501D6Uia334965058554850585897Ratregion
67225D6Arb1513066966117169661301Ratregion
67277D6Arb835764606374146064098Ratregion
1639193D6Wox247364606386946063942Ratregion
8693214rs10751130064780679747806797Ratregion
5038836RH12736035464580939045809744Ratregion
5035552MYCN72364144672741447450Ratregion
5034043RH14114521564862839948628614Ratregion
5031994AU04643429263464613534646427Ratregion
5032385AV00134222963355418133554410Ratregion
5025098AW82363313364550244145502574Ratregion
5028009M6364918765640367456403861Ratregion
5053691RH14279537863095942930959807Ratregion
5057372AA80024556263095942530959987Ratregion
5052121RH9485211564746918447469299Ratregion
5053135RH14247421965857640258576621Ratregion
5054645RH14334366163191864031919301Ratregion
5050820RH13427719364880235048802543Ratregion
5044136RH13043033165865693858657269Ratregion
5039754RH12788719164172548941725680Ratregion
5040814RH12849818563194733731947522Ratregion
5077070RH13954321463975803939758253Ratregion
5080334RH14151921164655002446550235Ratregion
5066860AU04810815466584765865847812Ratregion
5066876AU04809824566836444568364690Ratregion
8693339rs6639565665684886656848866Ratregion
8693338rs10742323464005241140052411Ratregion
5069884AU04667425963984116839841427Ratregion
5069482AU04646914864423502744235175Ratregion
5069048AU04675718463464074434640928Ratregion
5069568AU04640916963298107732981246Ratregion
5069794AU02866910265619841656198518Ratregion
5089495AU04918926566681360266813867Ratregion
5089981AU04947922064538709845387318Ratregion
5085643AA84852336563355413333554498Ratregion
5506086Myt1l58265228854452289126Ratregion
5506336MARC_49992-49993:1124119588:235963114123631141595Ratregion
5507249AI6395808463281758932817673Ratregion
5502573RH12541077564580395445804729Ratregion
5500459MARC4015-401643563101335031013785Ratregion
5501878MARC_16687-16688:1017861800:176563095160430952369Ratregion
Position Markers

Flank 1: (D6Rat39)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2620,338,777 - 20,338,915 (+)MAPPER
Rnor_6.0621,515,302 - 21,515,439NCBI
Rnor_5.0631,405,370 - 31,405,507UniSTS
Celera619,903,413 - 19,903,550UniSTS
RH 2.0 Map6179.7RGD
SHRSP x BN Map620.6398RGD
FHH x ACI Map620.5099RGD
Cytogenetic Map6q12UniSTS
Peak: (D6Rat134)
Rat AssemblyChrPosition (strand)Source
GRCr8653,437,535 - 53,437,730 (+)Marker Load Pipeline
mRatBN7.2647,709,990 - 47,710,185 (+)MAPPER
Rnor_6.0650,039,923 - 50,040,117NCBI
Rnor_5.0658,718,950 - 58,719,144UniSTS
RGSC_v3.4648,988,210 - 48,988,404UniSTS
RGSC_v3.4648,988,209 - 48,988,404RGD
Celera646,913,890 - 46,914,084UniSTS
RGSC_v3.1648,991,335 - 48,991,530RGD
RH 2.0 Map6450.4RGD
SHRSP x BN Map635.2298RGD
Flank 2: (D6Rat154)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2662,613,535 - 62,613,667 (+)MAPPER
Rnor_6.0665,784,687 - 65,784,818NCBI
Rnor_5.0675,362,932 - 75,363,063UniSTS
RGSC_v3.4664,955,448 - 64,955,579UniSTS
RGSC_v3.4664,955,447 - 64,955,579RGD
Celera661,588,803 - 61,588,934UniSTS
RGSC_v3.1664,958,573 - 64,958,705RGD
FHH x ACI Map652.4899UniSTS
FHH x ACI Map652.4899RGD


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6197587946975879Rat
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)64451097489510974Rat
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)668767270135411972Rat
8693632Alc27Alcohol consumption QTL 272.20.791drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)64005241156848866Rat
634318Bw118Body weight QTL 1183.55abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)63902865963457441Rat
4889933Bss88Bone structure and strength QTL 883.8tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)65368492198684921Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)64095756485957564Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)64515378690153786Rat
8552910Pigfal5Plasma insulin-like growth factor 1 level QTL 54.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)62265388967653889Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
5684992Bmd83Bone mineral density QTL 824.8tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)65368492198684921Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6323998948239989Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63118500276185002Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6197587946975879Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)671278722116278722Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)664367996109367996Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6197587946975879Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6144788383Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)66345744194939581Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6197587946975879Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)646050607116278722Rat
2292616Ept15Estrogen-induced pituitary tumorigenesis QTL 154.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6144788383Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6197587946975879Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)64604735391047353Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64451097489510974Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6186868070Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6323998948239989Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6323998948239989Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64451097489510974Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)63332884178328841Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
4889848Pur25Proteinuria QTL 25140.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)66303731995934232Rat
1300128Rf16Renal function QTL 163.89renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6140163351Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)63093763275937632Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)63332884178328841Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63902865986867923Rat
5684963Bss99Bone structure and strength QTL 993.1tibia area (VT:1000281)tibia area measurement (CMO:0001382)65368492198684921Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)61459947363457687Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)61608937261967788Rat
1358190Ept1Estrogen-induced pituitary tumorigenesis QTL 14.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6144788383Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6323998948239989Rat
1359023Bp272Blood pressure QTL 2722.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)62228825732981219Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)62228825767288257Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)64016318385163183Rat
6893332Cm74Cardiac mass QTL 740.40.64heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)66345744194939581Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general Surface area of well defferentiated adenocarcinomas 1625309
qtl_general number of animals used: 20 ACI/SegHsd, 20 WF/CrCrli, 20 ACI/SegHsd x WF/CrCrli F1 and 138 F2; software used: MAPMAKER/EXP3.0 and ANOVA 1625309
qtl_general measurement method: lesions were counted and a caliper was used to determine their maximum and minimum diameter 1625309
qtl_general inducing agent: injection of s.c.dimethylhydrazine (20 mg/kg body weight) weekly for 26 weeks 1625309
qtl_general colorectal lesions appeared as spherical or ovoid lesions with a velvety smooth or slightly bossy appearance in the entire length of colon and rectum 1625309