Cimip2c (ciliary microtubule inner protein 2C) - Rat Genome Database

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Gene: Cimip2c (ciliary microtubule inner protein 2C) Rattus norvegicus
Analyze
Symbol: Cimip2c
Name: ciliary microtubule inner protein 2C
RGD ID: 1559683
Description: Predicted to be involved in flagellated sperm motility. Predicted to be located in axonemal microtubule. Predicted to be active in axonemal A tubule inner sheath. Orthologous to human CIMIP2C (ciliary microtubule inner protein 2C); INTERACTS WITH 6-propyl-2-thiouracil; bisphenol A; copper atom.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Fam166c; family with sequence similarity 166 member C; hypothetical protein LOC500620; LOC500620; RGD1559683; similar to RIKEN cDNA 1700001C02; uncharacterized protein LOC500620; UPF0573 protein C2orf70 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8631,625,187 - 31,643,500 (-)NCBIGRCr8
mRatBN7.2625,905,294 - 25,923,615 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl625,905,294 - 25,923,615 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx626,197,967 - 26,216,277 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0626,513,848 - 26,532,158 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0625,992,822 - 26,011,126 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0627,305,402 - 27,323,992 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl627,305,402 - 27,323,992 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0637,117,774 - 37,136,364 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4625,889,215 - 25,908,084 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera625,383,869 - 25,401,938 (-)NCBICelera
Cytogenetic Map6q14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:21630459  


Genomics

Comparative Map Data
Cimip2c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8631,625,187 - 31,643,500 (-)NCBIGRCr8
mRatBN7.2625,905,294 - 25,923,615 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl625,905,294 - 25,923,615 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx626,197,967 - 26,216,277 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0626,513,848 - 26,532,158 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0625,992,822 - 26,011,126 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0627,305,402 - 27,323,992 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl627,305,402 - 27,323,992 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0637,117,774 - 37,136,364 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4625,889,215 - 25,908,084 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera625,383,869 - 25,401,938 (-)NCBICelera
Cytogenetic Map6q14NCBI
CIMIP2C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38226,562,587 - 26,579,524 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl226,562,585 - 26,579,532 (+)EnsemblGRCh38hg38GRCh38
GRCh37226,785,455 - 26,802,392 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36226,638,985 - 26,655,899 (+)NCBINCBI36Build 36hg18NCBI36
Celera226,629,117 - 26,646,026 (+)NCBICelera
Cytogenetic Map2p23.3NCBI
HuRef226,524,922 - 26,541,831 (+)NCBIHuRef
CHM1_1226,715,533 - 26,732,444 (+)NCBICHM1_1
T2T-CHM13v2.0226,601,745 - 26,618,672 (+)NCBIT2T-CHM13v2.0
Cimip2c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39530,623,395 - 30,641,433 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl530,623,391 - 30,641,432 (+)EnsemblGRCm39 Ensembl
GRCm38530,466,029 - 30,484,089 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl530,466,047 - 30,484,088 (+)EnsemblGRCm38mm10GRCm38
MGSCv37530,768,450 - 30,786,460 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36530,742,658 - 30,760,668 (+)NCBIMGSCv36mm8
Celera527,944,260 - 27,962,270 (+)NCBICelera
Cytogenetic Map5B1NCBI
cM Map516.57NCBI
Cimip2c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554698,588,900 - 8,604,337 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554698,588,820 - 8,603,333 (+)NCBIChiLan1.0ChiLan1.0
CIMIP2C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21299,936,109 - 99,956,927 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A99,940,080 - 99,960,894 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A26,558,826 - 26,578,005 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A26,651,265 - 26,668,192 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A26,651,283 - 26,668,192 (+)Ensemblpanpan1.1panPan2
CIMIP2C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11720,618,642 - 20,633,418 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1720,618,329 - 20,633,403 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1720,512,905 - 20,527,668 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01720,940,005 - 20,954,785 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1720,939,689 - 20,954,785 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11720,626,951 - 20,641,726 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01720,638,105 - 20,652,860 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01720,684,449 - 20,699,207 (+)NCBIUU_Cfam_GSD_1.0
Cimip2c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629264,927,300 - 64,943,438 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364935,896,206 - 5,912,182 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364935,896,206 - 5,912,182 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CIMIP2C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3112,458,916 - 112,474,437 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13112,458,914 - 112,474,431 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23119,458,324 - 119,473,737 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CIMIP2C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11481,059,408 - 81,077,554 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1481,057,764 - 81,076,400 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604531,071,037 - 31,089,094 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cimip2c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247388,702,652 - 8,716,962 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cimip2c
90 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:32
Count of miRNA genes:31
Interacting mature miRNAs:32
Transcripts:ENSRNOT00000013198
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6141223769Rat
1549905Stresp10Stress response QTL 106.830.0066stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)6127574569Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)6134235784Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6141223769Rat
1578758Tcas9Tongue tumor susceptibility QTL 93.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)6137618905Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6141223769Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6139036266Rat
738024Sach5Saccharine consumption QTL 53.90.00039consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)6143394190Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6141223769Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6141223769Rat
738023Alc17Alcohol consumption QTL 173.10.003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)6127574569Rat
1354616Despr12Despair related QTL 120.0012locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)6127574569Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6142487980Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6142487980Rat
7411584Foco4Food consumption QTL 44.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6142838846Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
2300176Bmd51Bone mineral density QTL 5111.70.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)6127574569Rat
1300128Rf16Renal function QTL 163.89renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449734434305Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)62033877762613667Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61173566972593685Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6142487980Rat
1359023Bp272Blood pressure QTL 2722.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)61653614027261739Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)61653614071636405Rat
2300190Bmd52Bone mineral density QTL 5211.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)6127574569Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
3 3 2 44 12 22 4 7 4 2 20 12 42 37 18

Sequence


Ensembl Acc Id: ENSRNOT00000013198   ⟹   ENSRNOP00000013198
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl625,905,294 - 25,923,615 (-)Ensembl
Rnor_6.0 Ensembl627,305,402 - 27,323,992 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000113552   ⟹   ENSRNOP00000091220
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl625,905,294 - 25,912,986 (-)Ensembl
RefSeq Acc Id: NM_001109275   ⟹   NP_001102745
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8631,625,188 - 31,643,500 (-)NCBI
mRatBN7.2625,905,294 - 25,923,615 (-)NCBI
Rnor_6.0627,305,402 - 27,323,992 (-)NCBI
Rnor_5.0637,117,774 - 37,136,364 (-)NCBI
RGSC_v3.4625,889,215 - 25,908,084 (-)RGD
Celera625,383,869 - 25,401,938 (-)RGD
Sequence:
RefSeq Acc Id: XM_039112708   ⟹   XP_038968636
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8631,625,187 - 31,643,494 (-)NCBI
mRatBN7.2625,905,381 - 25,923,609 (-)NCBI
RefSeq Acc Id: XM_063262287   ⟹   XP_063118357
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8631,627,239 - 31,643,494 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001102745 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968636 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118357 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM02989 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000013198.6
  ENSRNOP00000091220.1
RefSeq Acc Id: NP_001102745   ⟸   NM_001109275
- UniProtKB: D3ZW52 (UniProtKB/TrEMBL),   A6HAD4 (UniProtKB/TrEMBL),   A0A8I6AF65 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000013198   ⟸   ENSRNOT00000013198
RefSeq Acc Id: XP_038968636   ⟸   XM_039112708
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000091220   ⟸   ENSRNOT00000113552
RefSeq Acc Id: XP_063118357   ⟸   XM_063262287
- Peptide Label: isoform X2
Protein Domains
Ciliary microtubule inner protein 2A-C-like

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694464
Promoter ID:EPDNEW_R4988
Type:multiple initiation site
Name:RGD1559683_1
Description:similar to RIKEN cDNA 1700001C02
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0627,323,976 - 27,324,036EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1559683 AgrOrtholog
BioCyc Gene G2FUF-38310 BioCyc
Ensembl Genes ENSRNOG00000009905 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000013198.6 UniProtKB/TrEMBL
  ENSRNOT00000113552.1 UniProtKB/TrEMBL
InterPro CIMIP2C UniProtKB/TrEMBL
  UPF0573/UPF0605 UniProtKB/TrEMBL
KEGG Report rno:500620 UniProtKB/TrEMBL
NCBI Gene 500620 ENTREZGENE
PANTHER PROTEIN FAM166C UniProtKB/TrEMBL
  UPF0573 PROTEIN C2ORF70 UniProtKB/TrEMBL
Pfam DUF2475 UniProtKB/TrEMBL
PhenoGen Cimip2c PhenoGen
RatGTEx ENSRNOG00000009905 RatGTEx
UniProt A0A8I6AF65 ENTREZGENE, UniProtKB/TrEMBL
  A6HAD4 ENTREZGENE, UniProtKB/TrEMBL
  D3ZW52 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-05-05 Cimip2c  ciliary microtubule inner protein 2C  Fam166c  family with sequence similarity 166 member C  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2019-09-30 Fam166c  family with sequence similarity 166 member C  RGD1559683  similar to RIKEN cDNA 1700001C02  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1559683  similar to RIKEN cDNA 1700001C02   RGD1559683_predicted  similar to RIKEN cDNA 1700001C02 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1559683_predicted  similar to RIKEN cDNA 1700001C02 (predicted)  LOC500620  similar to RIKEN cDNA 1700001C02  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC500620  similar to RIKEN cDNA 1700001C02      Symbol and Name status set to provisional 70820 PROVISIONAL