D6Rat35 Marker Search Result - Rat Genome Database

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Marker: D6Rat35

Symbol: D6Rat35
Previously known as: oxsts7281; R018-C11; R0018-C11; 
RGD ID: 35396
Expected Size: 168 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8640,163,183 - 40,163,351 (+)Marker Load Pipeline
mRatBN7.2634,434,137 - 34,434,305 (+)MAPPERmRatBN7.2
Rnor_6.0634,367,436 - 34,367,603NCBIRnor6.0
Rnor_5.0644,141,046 - 44,141,213UniSTSRnor5.0
RGSC_v3.4635,232,849 - 35,233,017RGDRGSC3.4
RGSC_v3.4635,232,850 - 35,233,017UniSTSRGSC3.4
RGSC_v3.1635,235,803 - 35,235,970RGD
Celera633,815,086 - 33,815,259UniSTS
RH 3.4 Map6145.7UniSTS
RH 3.4 Map6145.7RGD
SHRSP x BN Map628.5599UniSTS
SHRSP x BN Map628.5599RGD
FHH x ACI Map629.3099RGD
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
QTLs:   Rf16   Rf14  


Annotation


#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines


 
Forward Primer CCAATTGCCCAGTAGTTTCC
Reverse Primer CTCCCCAACCTTACTCCCTC
 
Template 
AAGTTGCATGCTGCAGGTCGACTCTAGAGGATCCCCCTAATCCAATTGCCCAGTAGTTTCCATA
TCATTCAAAATATATTGTCTGTGAGAATGTTTGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGGTTTGTTTTTCAAATGCAGAAAGAAAAGGTGTAGAATTTGTAGGGTA
AAGGAGGGAGTAAGGTTGGGGAGGAATTTAGAAGGGGGAAAGCATGATCAGAATTGAATGATCA
GAAAGAATAATCAGTGTGGCAATTTTTCAATAAACGAAAGTGACACCAACATACCTAGGGTACC
GAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATT
CCACACAACATACGAGCCGGAAGCATANAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAAC
TCAATTAATTGCGTTGCGCTCATGCCCGCTTTCCAGTCGGGAAACTGTCGTGCACTGCATTAAT
GAATCGGCACGCGCGGGGAAGCGGTTNCGTATTGGCGCAGGGTGTTTTTTNTTCACAGTGGANG
GCNANCTGAT
Strain, Expected Size(s)

ACI/N 168 AVN/Orl 168 BBDP/Rhw 168
BBDR/Rhw 168 BC/CpbU 168 BDIX/Han 170
BDVII/Cub 174 BN-Lx/Cub 168 BN/SsNHsd 168
BP/Cub 172 BUF/Pit 168 COP/OlaHsd 168
DA/PitN 168 DON/Melb 174 F344/Pit 174
FHH/Eur 176 GH/Omr 174 GK/KyoSwe 176
IS/Kyo 176 M520/N 176 MNRA/N 174
MNS/Gib 168 MR/Pit 174 NEDH/K 176
NP9 168 ODU/N 174 OKA/Wsl 176
OM/Ztm 174 P5C 168 PVG/Pit 168
SD/Rij 168 SHR/OlaHsd 176 SHRSP/Riv 176
SR/Jr 176 SS/Jr 174 WAG/RijKyo 174
WF/Pit 168 WIST/Nhg 174 WKY/OlaHsd 174
WN/N 168 WTC/Kyo 174


GenBank Nucleotide CH473947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 31 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6141223769Rat
8693632Alc27Alcohol consumption QTL 272.20.791drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)63432335751121479Rat
634318Bw118Body weight QTL 1183.55abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)63330954957730294Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63207442872227641Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6141223769Rat
1578758Tcas9Tongue tumor susceptibility QTL 93.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)6137618905Rat

1 to 10 of 31 rows


Database
Acc Id
Source(s)
NCBI Gene 444927 UniSTS
  444942 UniSTS