Tcas9 QTL Report (Rattus norvegicus) - Rat Genome Database
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QTL: Tcas9 (Tongue tumor susceptibility QTL 9) Rattus norvegicus

Symbol: Tcas9
Name: Tongue tumor susceptibility QTL 9
RGD ID: 1578758
Trait: tongue integrity trait   (VT:0010553)    
Measurement Type: number of squamous cell tumors of the tongue with diameter greater than 3 mm   (CMO:0001950)    
LOD Score: 3.29
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.061 - 25,048,718RGD_MAPPER_PIPELINERnor6.0
Rnor_5.061 - 25,028,411RGDRnor5.0
RGSC_v3.461 - 25,291,384RGDRGSC3.4
RGSC_v3.160 - 25,291,250RGD
Cross Type: Not Available
Strains Crossed: DA WF 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
DA  (IEA)
WF  (IEA)

References

References - curated
1. Tanuma JI, etal., Jpn J Cancer Res 2001 Jun;92(6):610-6.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
68404Epas1endothelial PAS domain protein 161030650810385239Rat
619709Fez2fasciculation and elongation protein zeta 269639031003955Rat
3709Slc3a1solute carrier family 3 member 1682849378318649Rat
3376Ppp1cbprotein phosphatase 1 catalytic subunit beta62354850723581136Rat
2460Cyp1b1cytochrome P450, family 1, subfamily b, polypeptide 1623081792316739Rat
2632Fshrfollicle stimulating hormone receptor61279638312997817Rat
3782Strnstriatin612327291319603Rat
3402Eif2ak2eukaryotic translation initiation factor 2-alpha kinase 2614288451466193Rat
68940Kcnk12potassium two pore domain channel subfamily K member 1261137391711494459Rat
628690Mcfd2multiple coagulation factor deficiency 2, ER cargo receptor complex subunit61088730310899221Rat
727935Fbxo11F-box protein 1161166235611737427Rat
620909Six3SIX homeobox 3688867308891094Rat
3007Lhcgrluteinizing hormone/choriogonadotropin receptor61249318212554482Rat
621545CriptCXXC repeat containing interactor of PDZ3 domain61059414710602103Rat
621365Epcamepithelial cell adhesion molecule61128219411308870Rat
621730Spdyaspeedy/RINGO cell cycle regulator family member A62349368623543236Rat
708575Dpy30dpy-30 histone methyltransferase complex regulatory subunit62229612822316894Rat
620507Crnkl1crooked neck pre-mRNA splicing factor 161834922618351540Rat
628659Nrxn1neurexin 161388675715191660Rat
68379Ltbp1latent transforming growth factor beta binding protein 162120350221600441Rat
620786Msh2mutS homolog 261121595111274916Rat
1304582Mtm1myotubularin 161882182118840449Rat
1304935Plekhh2pleckstrin homology, MyTH4 and FERM domain containing H2677847437895986Rat
71071Haao3-hydroxyanthranilate 3,4-dioxygenase670451457059227Rat
1304687Alkbh8alkB homolog 8, tRNA methyltransferase61887788518952773Rat
1303057Tmem178atransmembrane protein 178A636573553716079Rat
2258Calm2calmodulin 261106767511080078Rat
735178Eif3heukaryotic translation initiation factor 3, subunit H61015173210236677Rat
1304612Rasgrp3RAS guanyl releasing protein 362107263421171619Rat
620300Abcg8ATP binding cassette subfamily G member 8679614137980708Rat
61925Prkceprotein kinase C, epsilon694834009973396Rat
620298Abcg5ATP binding cassette subfamily G member 5679357717961207Rat
621626Rhoqras homolog family member Q61053315110568582Rat
628832Kcng3potassium voltage-gated channel modifier subfamily G member 3667948086842758Rat
621280Map4k3mitogen-activated protein kinase kinase kinase kinase 3632767323444519Rat
1305125Atl2atlastin GTPase 2625689752610432Rat
727878Ston1stonin 161233246512379783Rat
1305858Cdc42ep3CDC42 effector protein 3619225001942972Rat
1305861Hnrnpllheterogeneous nuclear ribonucleoprotein L-like626989832729715Rat
1304994CebpzCCAAT/enhancer binding protein zeta615168041534488Rat
1309929Memo1mediator of cell motility 162236248322409583Rat
1307247Birc6baculoviral IAP repeat-containing 662190076322092484Rat
1304963Pcarephotoreceptor cilium actin regulator62333750723346232Rat
1307425Srsf7serine and arginine rich splicing factor 7628793122886505Rat
1306803Mta3metastasis associated 1 family, member 3669044497036929Rat
1306575Lrpprcleucine-rich pentatricopeptide repeat containing679840438066874Rat
628622AlkALK receptor tyrosine kinase62269641523203791Rat
3717Slc8a1solute carrier family 8 member A1642440764564262Rat
1304690Eml4EMAP like 4666183706674550Rat
1306111Cox7a2lcytochrome c oxidase subunit 7A2 like666958076709790Rat
1308625Gtf2a1lgeneral transcription factor 2A subunit 1 like61241219812468613Rat
1311049Clip4CAP-GLY domain containing linker protein family, member 462322202023316962Rat
1560460LOC316717protein serine-threonine phosphatase catalytic subunit PP-1c61808894218090200Rat
1310453Camkmtcalmodulin-lysine N-methyltransferase683466458729773Rat
1306878Thumpd2THUMP domain containing 2637430803794512Rat
1310949Sos1SOS Ras/Rac guanine nucleotide exchange factor 1631054433182977Rat
1310340Dhx57DExH-box helicase 57629213402961397Rat
1311578Ndufaf7NADH:ubiquinone oxidoreductase complex assembly factor 7615345941545831Rat
1310068Galnt14polypeptide N-acetylgalactosaminyltransferase 1462477030824985711Rat
1310083Cwf19l2CWF19 like cell cycle control factor 261897061619037176Rat
1308710Crim1cysteine rich transmembrane BMP regulator 16788490962663Rat
1311424Gpatch11G patch domain containing 11614104611421506Rat
1309250Slc30a6solute carrier family 30 member 662219700322226364Rat
1309831Nlrc4NLR family, CARD domain containing 462216787422194755Rat
1311615Ttc39dtetratricopeptide repeat domain 39D628867642895118Rat
1310236Prkd3protein kinase D3615460181622232Rat
1310157Yipf4Yip1 domain family, member 462212687022138286Rat
1305486Fam98afamily with sequence similarity 98, member A62105132721065986Rat
1309234Uap1l2UDP-N-acteylglucosamine pyrophosphorylase 1-like 261775424817760364Rat
1305264Ttc27tetratricopeptide repeat domain 2762173583321880008Rat
1310286Dync2li1dynein cytoplasmic 2 light intermediate chain 1679009627933795Rat
1310677Togaram2TOG array regulator of axonemal microtubules 262335876223416386Rat
1308913Zfp36l2zinc finger protein 36, C3H type-like 2674174167423447Rat
1309657Ypel5yippee-like 562406935124084758Rat
1308494Spastspastin62223006722282166Rat
1306211Ttc7atetratricopeptide repeat domain 7A61091238311014279Rat
1310143Preplprolyl endopeptidase-like683168618346293Rat
3374Ppm1bprotein phosphatase, Mg2+/Mn2+ dependent, 1B682193858280127Rat
1565005Wdr43WD repeat domain 4362343353223473179Rat
1565906Lclat1lysocardiolipin acyltransferase 162437739824515412Rat
1562284Qpctglutaminyl-peptide cyclotransferase616571101689575Rat
1563988Morn2MORN repeat containing 2629692902974419Rat
1564275RGD1564275similar to Zinc finger HIT domain containing protein 161860451518604951Rat
1560224Arhgef33Rho guanine nucleotide exchange factor 33629823243100358Rat
1562682Capn13calpain 1362457959024676536Rat
1359510LOC298795similar to 14-3-3 protein sigma62375722523758508Rat
1359216Heatr5bHEAT repeat containing 5B613303141410339Rat
1562788Srbd1S1 RNA binding domain 1692665599459212Rat
1564128Vitvitrin610918171208888Rat
1311680Atp6v1e2ATPase H+ transporting V1 subunit E261051037010517059Rat
1310792Six2SIX homeobox 2689525728955893Rat
1311939Pkdccprotein kinase domain containing, cytoplasmic664276576436974Rat
1559836Rmdn2regulator of microtubule dynamics 2622150622292288Rat
1560519ThadaTHADA, armadillo repeat containing674235557741431Rat
1334223Olr1844-psolfactory receptor pseudogene 184461666977016670518Rat
1562306RGD1562306similar to H2A histone family, member Z61185962211860016Rat
1311168Gemin6gem (nuclear organelle) associated protein 6629070402911577Rat
1584525LbhLBH regulator of WNT signaling pathway62415420724184217Rat
1583780Hspd1-ps11heat shock protein 1, pseudogene 1162044857920450778Rat
1583783LOC366541similar to Phosphate carrier protein, mitochondrial precursor (PTP) (Solute carrier family 25 member 3)687734698775607Rat
1564914Socs5suppressor of cytokine signaling 561067131110705610Rat
1585899LOC679690similar to ATP synthase, H+ transporting, mitochondrial Fo complex, subunit G617085651708921Rat
1584001LOC690171similar to H3 histone, family 3B664700736482492Rat
1584658Pigfphosphatidylinositol glycan anchor biosynthesis, class F61056584110593972Rat
1583779LOC366558similar to suppression of tumorigenicity 1362091378020915080Rat
1585984LOC679604similar to heterogeneous nuclear ribonucleoprotein F615080931509762Rat
1562291Foxn2forkhead box N261215812712205450Rat
1562146RGD1562146RGD1562146697544019761217Rat
1359459Galmgalactose mutarotase628089882860742Rat
1565310Ppp1r21protein phosphatase 1, regulatory subunit 2161225378812323427Rat
1586183LOC298789hypothetical LOC29878962256289222564477Rat
1591362LOC685651similar to ribosomal protein L18a62228406622284872Rat
1587169LOC679514similar to H3 histone, family 3B6684804685352Rat
1588160Tmem247transmembrane protein 24761048330810488255Rat
1583703LOC503014similar to ribosomal protein L3161158059511580965Rat
1583704Cdkl4cyclin-dependent kinase-like 4632322783272454Rat
1583701LOC503016similar to High mobility group protein 2 (HMG-2)62252828722529521Rat
1583702LOC503015similar to L-lactate dehydrogenase A chain (LDH-A) (LDH muscle subunit) (LDH-M)62094851220949477Rat
1589005LOC685881hypothetical protein LOC68588162456276124563327Rat
1597093LOC366782similar to 60S ribosomal protein L761876852618769385Rat
1598336LOC301686similar to Glycogen [starch] synthase, muscle61547599015478206Rat
1598337LOC301683similar to Polypyrimidine tract-binding protein 1 (PTB) (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I)61383464313836133Rat
1596478LOC685218similar to RRS1 ribosome biogenesis regulator homolog61878513218787785Rat
1591638Stpg4sperm-tail PG-rich repeat containing 461101459611063509Rat
1591317LOC685696similar to small nuclear ribonucleoprotein D262245710922457797Rat
1597031LOC500607similar to eukaryotic translation initiation factor 4A2629802732982093Rat
1597030LOC500610similar to proteaseome (prosome, macropain) 28 subunit, 3661799696180941Rat
1598187Sult6b1sulfotransferase family 6B member 1614680831493670Rat
1597710LOC685173similar to carbonic anhydrase 1361870877518717266Rat
2319303LOC100361875Egln1 protein-like61877046118771948Rat
2319011LOC100365469hypothetical LOC100365469666134506615306Rat
2322311Msh6mutS homolog 661164456511662389Rat
2320894LOC100361066ubiquitin-conjugating enzyme E2E 1-like61801357118014309Rat
2323142LOC100359902hypothetical LOC1003599026766299769507Rat
2321878LOC100360579nuclear cap binding protein subunit 2-like61215585012157893Rat
2324313LOC100362645Egam-1N-like61042294510426355Rat
2324081LOC100362777mortality factor 4 like 1617057181706711Rat
4888601Mir3558microRNA 355861099269110992804Rat
2325084LOC100359644hypothetical LOC10035964461110434811104961Rat
2325125LOC100359600karyopherin alpha 2-like61064270510644673Rat
6489794LOC10091195540S ribosomal protein S17-like616277501628155Rat
6488952LOC100912066uncharacterized LOC10091206662434292424362857Rat
6484822LOC100913036glyceraldehyde-3-phosphate dehydrogenase-like668366246837757Rat
6495104LOC100911110eukaryotic translation initiation factor 3 subunit H-like61015172810236696Rat
6501902LOC100909716protein SET-like648466634858458Rat
6502562LOC100909597WW domain-containing adapter protein with coiled-coil-like61747778217542849Rat
6496793LOC100910809uncharacterized LOC100910809681372398149825Rat
6496868LOC100910710NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12-like61929977419301148Rat
6503465LOC100909413alpha-enolase-like61466598614668125Rat
6503641LOC100909448AP-2 complex subunit mu-like61466739214672392Rat
6500550LOC100910081uncharacterized LOC100910081662967376301022Rat
7522754LOC102551210uncharacterized LOC102551210691959029225088Rat
7527307LOC102547863uncharacterized LOC102547863674489187492758Rat
7521850LOC102550058uncharacterized LOC10255005861311253613185314Rat
7506713LOC102553955uncharacterized LOC10255395562465768224671842Rat
7531265LOC102547438uncharacterized LOC10254743862452746424532334Rat
7502774LOC102551445uncharacterized LOC102551445694674889469676Rat
7534510LOC102549561pyruvate kinase PKM-like61244080212443044Rat
7513222LOC102550824uncharacterized LOC102550824681680038201990Rat
7534844LOC102551142uncharacterized LOC102551142689569988958012Rat
7537420LOC102550908uncharacterized LOC10255090861459687014599498Rat
7516562LOC102552558xenotropic and polytropic retrovirus receptor 1-like61699915317048644Rat
7517311LOC102553857uncharacterized LOC102553857662573936276006Rat
7242712Crnkl1-ps1crooked neck pre-mRNA splicing factor 1, pseudogene 161834922618351540Rat
7612440LOC102548368uncharacterized LOC102548368671366637155526Rat
7613897LOC102550312uncharacterized LOC10255031261344714513462635Rat
7638001LOC102554703uncharacterized LOC102554703623754412398979Rat
7641948LOC102552412uncharacterized LOC102552412649029254912975Rat
7641963LOC102554832transmembrane protein 126A-like61901654519019635Rat
7609114LOC102548187synaptophysin-like protein 1-like673629927366644Rat
7629169LOC102551952uncharacterized LOC102551952636312383639259Rat
7610953LOC102551744eukaryotic translation initiation factor 1-like633753083376261Rat
7616051LOC102557106uncharacterized LOC102557106625372792547536Rat
7593366LOC102553396uncharacterized LOC10255339662406473724069291Rat
7543184LOC102557372uncharacterized LOC102557372614712461474361Rat
7556929LOC102548459wiskott-Aldrich syndrome protein family member 1-like670720807075054Rat
7577980LOC102554579uncharacterized LOC102554579664984836509173Rat
7548576LOC102555012uncharacterized LOC10255501261114873611153450Rat
7602954LOC102548558protein tyrosine phosphatase type IVA 1-like62349370423497315Rat
7563159LOC102554046uncharacterized LOC10255404662462356424636121Rat
7604611LOC10255165360S ribosomal protein L17-like631490383150782Rat
7584021LOC102557388uncharacterized LOC102557388699164199925700Rat
7584786LOC102546644uncharacterized LOC10254664461221134112214372Rat
7691358LOC102548121uncharacterized LOC102548121673220177416383Rat
7752374LOC102554045uncharacterized LOC102554045662077836256823Rat
7695048LOC102549991uncharacterized LOC10254999161271705712718518Rat
7673523LOC102554883uncharacterized LOC102554883666736446682090Rat
7676249LOC10254928060S ribosomal protein L32-like62112426821135919Rat
7707848LOC102550556uncharacterized LOC10255055661449677114504794Rat
7723359LOC102553826uncharacterized LOC10255382661880272918821510Rat
7725660LOC102549671uncharacterized LOC10254967161258509012596211Rat
7726994LOC102551891uncharacterized LOC102551891635181713522725Rat
7734715LOC102555011uncharacterized LOC102555011667361446739926Rat
7666954LOC102550619polypyrimidine tract-binding protein 1-like61396740414012848Rat
7740587LOC102554743pantothenate kinase 3-like61892203618925972Rat
7697691LOC102546793uncharacterized LOC10254679362187239221874656Rat
7670248LOC102553135uncharacterized LOC10255313561796530617970792Rat
7670283LOC102556624uncharacterized LOC102556624665147196517639Rat
7702192LOC102550208uncharacterized LOC10255020861324227013288148Rat
7702239LOC102551687phosphoglycerate mutase 1-like696166439618720Rat
7727452LOC102547702uncharacterized LOC102547702679965988005141Rat
7676089LOC102547591uncharacterized LOC10254759162433622324342776Rat
7711568LOC102553200uncharacterized LOC10255320067139975807Rat
9134994LOC103692544uncharacterized LOC103692544664204646422221Rat
9213005LOC103692538uncharacterized LOC103692538644105874411890Rat
9094701LOC103692567uncharacterized LOC10369256762388531623891768Rat
9172621LOC103692550uncharacterized LOC103692550683380098342524Rat
9177508CebpzosCEBPZ opposite strand615141911518858Rat
9146338LOC103692557uncharacterized LOC10369255761161928211622269Rat
9183386LOC103692553uncharacterized LOC10369255361088818610888873Rat
9103387LOC103692536uncharacterized LOC103692536645021564505491Rat
9103844LOC103692533uncharacterized LOC103692533620068442009224Rat
9197316LOC103689957F-box only protein 11-like61142796811443265Rat
9204120LOC103692539uncharacterized LOC103692539644035104404401Rat
9206348LOC103692537uncharacterized LOC103692537644592894470137Rat
9086644LOC103692563uncharacterized LOC10369256362222645222246457Rat
9221938LOC103692541uncharacterized LOC103692541662573936260382Rat
9229017LOC103690379uncharacterized LOC103690379662930106328535Rat
9312776LOC103692546uncharacterized LOC103692546671921267195358Rat
9230730LOC103692559high mobility group protein B3 pseudogene61409786914099320Rat
9276069LOC103692534uncharacterized LOC103692534623239002350745Rat
9231938LOC103692542uncharacterized LOC103692542663202306323871Rat
9278183LOC103692555uncharacterized LOC10369255561121619811219819Rat
9236593LOC103692540phosphomannomutase 1 pseudogene661705256172463Rat
9376604LOC103692530proline-rich extensin-like protein EPR1613605871361913Rat
9378286LOC103692549uncharacterized LOC103692549685126968527668Rat
9244789LOC10369254860S ribosomal protein L17 pseudogene682988558300488Rat
9245640LOC103692547uncharacterized LOC103692547674783057492758Rat
9387199LOC103692556homeobox protein Hox-D9-like682199288220944Rat
9290018LOC10369256060S ribosomal protein L10a pseudogene61429965714350180Rat
9255035LOC103692578basic proline-rich protein-like62329826123304031Rat
9255248LOC103692561uncharacterized LOC10369256161476162714783609Rat
9338519LOC103695286uncharacterized LOC103695286665873636592894Rat
9259827LOC103692532uncharacterized LOC103692532618590521861142Rat
9364253LOC103692543uncharacterized LOC103692543664008396413493Rat
9388783LOC103692554uncharacterized LOC10369255461114605311164614Rat
9397711LOC103692568uncharacterized LOC10369256862398619724008941Rat
9403317LOC103692535uncharacterized LOC103692535633877623390883Rat
9406116LOC103692551uncharacterized LOC10369255161066929610671264Rat
9410951LOC103692558uncharacterized LOC10369255861232655312340593Rat
9459711LOC103692545uncharacterized LOC103692545667433546744831Rat
11372235LOC108351165uncharacterized LOC108351165667098606721766Rat
11359993Trnac-gca30transfer RNA cysteine (anticodon GCA) 3062348706323487134Rat
11449088LOC108351163uncharacterized LOC108351163643955604402880Rat
11449343LOC108351325proline--tRNA ligase-like61819355518194576Rat
11443157LOC108351172uncharacterized LOC10835117261109333411097719Rat
11443166LOC108351322uncharacterized LOC108351322624092522438583Rat
11469046LOC108351168uncharacterized LOC108351168688293018832836Rat
11470604LOC10835135640S ribosomal protein S18 pseudogene62162680921627252Rat
11472968Trnan-guu7transfer RNA asparagine (anticodon GUU) 7656998285699901Rat
11366009LOC108351354MLV-related proviral Env polyprotein-like61381964613820258Rat
11447028LOC108351355uncharacterized LOC10835135561728393017287813Rat
11448104LOC108351162uncharacterized LOC108351162638180573838341Rat
11440644LOC108351184uncharacterized LOC10835118462419282824242308Rat
11372988LOC108351327glyceraldehyde-3-phosphate dehydrogenase pseudogene62393632723937872Rat
11412449LOC108351324nuclear cap-binding protein subunit 2 pseudogene61207698712080327Rat
11414151LOC108351159uncharacterized LOC108351159625270622537107Rat
11417004LOC108351181uncharacterized LOC10835118162320562823214695Rat
11417322LOC10835132360S ribosomal protein L23-like681222768123702Rat
11419109LOC108351178uncharacterized LOC10835117862179714721799761Rat
11422410LOC108351183uncharacterized LOC10835118362377135523778358Rat
11423888LOC108351167uncharacterized LOC108351167688641988884481Rat
11385383LOC108351176uncharacterized LOC10835117661575826115778363Rat
11375870LOC108351170uncharacterized LOC108351170692143289233748Rat
11411460LOC108351169uncharacterized LOC108351169691299719140821Rat
11390034LOC108351171uncharacterized LOC10835117161058969910590238Rat
11394189LOC108351180uncharacterized LOC10835118062298872723002524Rat
11501632Trnai-uau2transfer RNA isoleucine (anticodon UAU) 2670741457074237Rat
11480265LOC108351174uncharacterized LOC10835117461329938313331224Rat
11505008LOC108351160uncharacterized LOC108351160634558593463563Rat
11480659LOC108351175uncharacterized LOC10835117561572614115767729Rat
11506404LOC108351161uncharacterized LOC108351161636230833630907Rat
11495481LOC108351326peptidyl-prolyl cis-trans isomerase D pseudogene61999149819992899Rat
11507583LOC108351185uncharacterized LOC10835118562425690924269969Rat
11508425LOC108351177uncharacterized LOC10835117761651460716518933Rat
11496786LOC10835131860S ribosomal protein L26-like680052528007768Rat
11511748LOC108351157uncharacterized LOC108351157619496881994553Rat
11482436LOC108351179uncharacterized LOC10835117962243460122511118Rat
11514173LOC108351158uncharacterized LOC108351158623995342402208Rat
11485359LOC108351182ALK tyrosine kinase receptor-like62372571323845519Rat
11485961LOC108351164uncharacterized LOC108351164664135016424600Rat
11488608LOC108351166uncharacterized LOC108351166673829347384831Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
33561D6Mit517561285662612856796Ratregion
36344D12Mit1012161790460417904724Ratregion
37298D6Rat10521561988810319888321Ratregion
37410D6Rat10717962069621520696387Ratregion
37496D6Rat10815061610012016100257Ratregion
37562D6Rat7714862407654524076696Ratregion
35411D6Rat56144633188043318947Ratregion
35507D6Rat4317262113329221133468Ratregion
35541D6Rat4716261434914114349286Ratregion
37000D6Rat1801556174130174284Ratregion
37142D6Rat80244611203931120644Ratregion
37808D7Rat8612261017386210173981Ratregion
36737D6Rat44173613181861318362Ratregion
34843D6Rat40141611203931120541Ratregion
35134D6Rat4121062204285422043112Ratregion
35579D6Rat5415562376449523764649Ratregion
35647D6Rat55155625486412548795Ratregion
35653D6Rat4214562116559121165729Ratregion
35683D6Rat3913862151530221515439Ratregion
35963D6Rat4614461312295813123101Ratregion
39622D6Rat15114961448552514485679Ratregion
39716D6Rat149150670099717010120Ratregion
38006D6Rat69231661617226161952Ratregion
40604D6Rat173171682148948215065Ratregion
40624D6Rat14824662207016822070417Ratregion
38724D6Rat8622462069916920699402Ratregion
39124D6Rat62217650004565000673Ratregion
39190D6Rat68270625370302537300Ratregion
39342D6Rat7423962259177822592009Ratregion
42771D6Rat21312161210411912104215Ratregion
42772D6Rat211125696599619660095Ratregion
42775D6Rat214236686128188613059Ratregion
42776D6Rat20914962209572922095901Ratregion
42777D6Rat17246562212878222129258Ratregion
42321D6Rat21224961473831514738548Ratregion
42322D6Rat225248671316167131857Ratregion
42323D6Rat224213630043543004566Ratregion
41702D6Rat1792456985684985932Ratregion
44024D6Got71596649476649634Ratregion
44025D6Got20418862209748822097675Ratregion
44027D6Got918562116069121160875Ratregion
44029D6Got1516362329938823299549Ratregion
44030D6Got1428362316403823164322Ratregion
44031D6Got1215362275749922757646Ratregion
44032D6Got139062338516823385255Ratregion
60537D6Got4294680333418033634Ratregion
60499D6Got1300689162508916547Ratregion
60811D6Wox1631061024169210242005Ratregion
60813D6Wox9166679686827968841Ratregion
60521D6Got194267669429976943260Ratregion
60522D6Got195122639680433968164Ratregion
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1631647D6Got515961200482912004987Ratregion
1632009D6Got32211061108314111083250Ratregion
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1632506D6Wox23614525351452668Ratregion
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8693210rs65621565682634158263415Ratregion
8693211rs10743500361222991812229918Ratregion
8693213rs10684487661357229613572296Ratregion
7206276Six3257688910498891305Ratregion
7206276Six3257688898888891305Ratregion
5038808RH12734421462408446224084675Ratregion
7206626Six2893689521748953066Ratregion
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5039150RH127541204678956407895843Ratregion
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5037207z3815134677750597775192Ratregion
5026038RH130666214681495588149771Ratregion
5028597MHAa84f4.seq17262420266724202838Ratregion
5028599AI449023307631032473103553Ratregion
7205792RH47096111664705916470701Ratregion
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5031572AU04788014562414091424141058Ratregion
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5026528RH13255920162354860523548806Ratregion
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5035104D2S2709147674174257417571Ratregion
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5025152RH12679021661166237811662593Ratregion
5030421BI28843317961038560010385778Ratregion
8663474rs1051861220636084443608444Ratregion
8663483rs106860522650001465000146Ratregion
8693417rs6488695762247762222477622Ratregion
5033501RH139060136692931089293243Ratregion
5025554RH128770152615186551518806Ratregion
5025690RH12928318261038702510387206Ratregion
5025760RH12955518062231659122316770Ratregion
5033737RH139934187630814293081615Ratregion
5033843RH140324121663290406329160Ratregion
5025900RH13013119862456237624562579Ratregion
5031199RH103002144626101752610318Ratregion
5055041RH143571224668421756842398Ratregion
5051154RH1344702016963924964124Ratregion
5051589AI644019101666742526674352Ratregion
5051591AW55027911461166169611661809Ratregion
5055603RH143896126688877218887846Ratregion
5055787RH144002107627317592731865Ratregion
5055129RH14362228761834949218349778Ratregion
5058784BF39367210962330648023306588Ratregion
5056127RH1441981026763301763402Ratregion
5056581RH14446126562336951323369778Ratregion
5056477RH14440126762202279722023063Ratregion
5057005UniSTS:239208647645199584520604Ratregion
5055333RH14374117462230121522301388Ratregion
5059794BE097889163631567913156953Ratregion
505218318.MMHAP91FRF9.seq185631836153183799Ratregion
5050148RH13388918262107289621073077Ratregion
5053259RH14254510162434437124344471Ratregion
5053819RH142869117692931079293223Ratregion
5050074RH13384721562321424723214461Ratregion
5051094RH134436181629791162979297Ratregion
5050388RH1340282186962385962603Ratregion
5051148RH13446720661238141012381615Ratregion
5054621RH143329138618591221859259Ratregion
5054673RH14335914961405520414055352Ratregion
5041604RH128952183642560314256213Ratregion
5044020RH130364201674236087423808Ratregion
5043308RH129951198636390203639217Ratregion
5043418RH130014194670367197036912Ratregion
5044936RH130889184637718183772001Ratregion
5045054RH13095618062502966025029839Ratregion
5041606RH12895418561883951418839698Ratregion
5041760RH12904320762343357823433784Ratregion
5044862RH130846202663006896300890Ratregion
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5046552RH13181918761116437711164563Ratregion
5046556RH131821196633194063319601Ratregion
5045156RH13101621061094133710941546Ratregion
5048882RH133160215688914338891656Ratregion
5045604RH131273180615456371545816Ratregion
5046694RH13190121662319863323198848Ratregion
5049132RH133304181619445171944697Ratregion
5048176RH132752206683182848318489Ratregion
5049466RH13349718262351001123510192Ratregion
5047076RH132120150637431753743324Ratregion
5049806RH13369221462334587323346086Ratregion
5039344RH127652180632771563277335Ratregion
5039520RH12775320861166111011661816Ratregion
5039556RH12777321761101393811014154Ratregion
5041952RH129153214661821226182335Ratregion
5048532RH132957187697046639704849Ratregion
5048586RH13298919862223051622230713Ratregion
5048600RH13299718161059674810596928Ratregion
5049506RH133520200699733539973552Ratregion
5040098RH128088216616890481689263Ratregion
5039546RH12776720362241484322415045Ratregion
5043132RH129850200628603162860514Ratregion
5040112RH128096181670747917074971Ratregion
5041034RH128625216626991452699360Ratregion
5041038RH12862720861088738510887592Ratregion
5043852RH13026519062173586921736058Ratregion
5043120RH129843180615462021546381Ratregion
5075206RH13846024961249254112492789Ratregion
5074006RH13776515061106487711065026Ratregion
5075566RH13866714661060115810601303Ratregion
5074256RH137911162615270911527252Ratregion
5072570RH136925166687295248729689Ratregion
5076712RH139335212619317701931981Ratregion
5076820RH1393979362223123322231325Ratregion
5076980RH139490189663288776329065Ratregion
5075886RH138853158677398977740054Ratregion
5074750RH13819714362280073722800879Ratregion
5077232RH13963819262357988723580078Ratregion
5076054RH138952166688765658876730Ratregion
5075174RH138441229666733556673583Ratregion
5077644RH139875185631036783103862Ratregion
5077672RH139891198623086332308830Ratregion
5079514RH14104218762354774023547926Ratregion
5076738RH13935018062354714923547328Ratregion
5076276RH139082183683169598317141Ratregion
5079576RH141080219619226481922866Ratregion
5077972RH140067150666244606624609Ratregion
5078398RH140319135627721242772258Ratregion
5079758RH141186181622168502217030Ratregion
5079808RH141215205682728678273071Ratregion
5077710RH139913206622802662280471Ratregion
5078718RH14051118061166261411662793Ratregion
5080042RH14134918462120372821203911Ratregion
5080214RH141450185674186967418880Ratregion
5073112RH137245197613305821330778Ratregion
5079268RH140883197697549829755178Ratregion
5070956RH134803182631065203106701Ratregion
5080428RH141573180683904128390591Ratregion
5078710RH1405059162357997923580069Ratregion
5073920RH137715127629816972981823Ratregion
5074178RH137866120631380353138154Ratregion
5072222RH13672413362320315523203287Ratregion
5072292RH1367646462434437724344440Ratregion
5074830RH13824313462349860723498740Ratregion
5063330BF404107177678217327821908Ratregion
5063330BF404107177677345587734734Ratregion
5066716AU04819315062274203822742187Ratregion
5067012AU048017231681795468179776Ratregion
5067118AU047952292633506033350894Ratregion
8693335rs1074392146135053135053Ratregion
8693336rs10759243562360027423600274Ratregion
8693337rs13452788699742779974277Ratregion
5067700AU047588159653450095345167Ratregion
5067848AU04749923362050483420505066Ratregion
5068346AU04720213162472397124724101Ratregion
5068434AU04714715261923881319238964Ratregion
5069460AU046482203665134026513599Ratregion
5069576AU04640523561299871212998946Ratregion
5069642AU046365233633051473305372Ratregion
5069344AU046558149618190291819172Ratregion
5063516BF40430610262239698422397085Ratregion
5062734AW53413617062348838223488551Ratregion
5062738AW53414518161053177210531952Ratregion
5065950AA92506415762240929222409448Ratregion
5062030BE112607160682203248220483Ratregion
5063812AW535278154683158518316004Ratregion
5064428BI30219017961928887219289050Ratregion
5061438BE11176115162451731724517467Ratregion
5087480PMC20271P1637645198674520503Ratregion
5087400FSHR30461279686712797170Ratregion
5087854AA43797213661775986917760004Ratregion
5088979AU04888221261854887818549089Ratregion
5083135BF390837210614506881450897Ratregion
5083593BE10078211162120365621203766Ratregion
5080766RH14176919261056714810567339Ratregion
5080838RH141812202664707486471111Ratregion
5080838RH141812202664707486470950Ratregion
5081160RH141999198642440984244295Ratregion
5089995AU049487117681206958120840Ratregion
5082789BF39011520262320513923205340Ratregion
5081162RH14200019061516682715167016Ratregion
5081218RH142033218699759669976183Ratregion
5086805AA892666188628600752860262Ratregion
5507543G40348256677750617775316Ratregion
5502965LHCGR49361249425412494746Ratregion
5503274UniSTS:23769822562106557221065796Ratregion
5503494Cyp1b1848623150892315936Ratregion
5504242AL0336301293699643599965651Ratregion
5504266G43537142626102042610345Ratregion
5504280D2S1690E1249631274383128686Ratregion
5504823ha218042656897095689750Ratregion
5505261Hnrnpf325615082881508610Ratregion
5506389UniSTS:47908653961834939918349937Ratregion
5506229Epas19561035974210359836Ratregion
5506431Sfrs7841628840392885213Ratregion
5506835G46426237628986032898839Ratregion
5507225G65690218688918268892043Ratregion
5500583RH136073195626996312699825Ratregion
5500202G67001494652507945251287Ratregion
5500505RH12659020162245743022457627Ratregion
5500509RH12691424962231657022316818Ratregion
5503278UniSTS:237713232631837803184011Ratregion
5503284UniSTS:237721230687295128729741Ratregion
5503376Slc8a1605645196644520268Ratregion
5501237PMC16375P1468634232473423714Ratregion
5501558D11S4187137861247241812473795Ratregion
5501564emaa295641688334169127Ratregion
Position Markers

Peak: (D6Rat55)
Rat AssemblyChrPosition (strand)Source
Rnor_6.062,548,641 - 2,548,795NCBI
Rnor_5.062,528,334 - 2,528,488UniSTS
RGSC_v3.462,791,170 - 2,791,598RGD
RGSC_v3.462,791,173 - 2,791,327UniSTS
RGSC_v3.162,791,173 - 2,791,327RGD
Celera614,788,793 - 14,788,947UniSTS
RH 3.4 Map655.3UniSTS
RH 3.4 Map655.3RGD
RH 2.0 Map6146.4RGD
FHH x ACI Map613.79RGD


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6123620518Rat
1578758Tcas9Tongue tumor susceptibility QTL 93.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)6125048718Rat
738023Alc17Alcohol consumption QTL 173.10.003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)6135623029Rat
1354616Despr12Despair related QTL 120.0012locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)6135623029Rat
1549905Stresp10Stress response QTL 106.830.0066stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)6135623029Rat
2300176Bmd51Bone mineral density QTL 5111.70.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)6135623029Rat
2300190Bmd52Bone mineral density QTL 5211.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)6135623029Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)6141917988Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6142388212Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6142388212Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6142388212Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6142388212Rat
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6142388212Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6143665660Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6143665660Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6143665660Rat
7411584Foco4Food consumption QTL 44.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6144015370Rat
738024Sach5Saccharine consumption QTL 53.90.00039consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)6144570292Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6175623393Rat
8693645Alc31Alcohol consumption QTL 313.70.038drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)613505323600274Rat
1359023Bp272Blood pressure QTL 2722.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)6112039328706721Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)6112039346120393Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)6112039375023446Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)62537030111715717Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)6616172276002731Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)6616172276002731Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)percentage of deaths in a study population during a period of time (CMO:0001024)67009971115379601Rat
1358190Ept1Estrogen-induced pituitary tumorigenesis QTL 14.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6808322221515439Rat
2292616Ept15Estrogen-induced pituitary tumorigenesis QTL 154.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6808322221515439Rat
8693699Alc37Alcohol consumption QTL 372.60.224drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)6997427722477622Rat
8693690Alc35Alcohol consumption QTL 352.20.606drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)6997427722477622Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)71017386255173862Rat
2293706Bmd20Bone mineral density QTL 204.30.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61312295821165729Rat
1300128Rf16Renal function QTL 163.89renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)61312295834367603Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)61312295857516539Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61681010761810107Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61681010761810107Rat
8552910Pigfal5Plasma insulin-like growth factor 1 level QTL 54.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)61941788764417887Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)62151530265784818Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62204285484763421Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62204285484763421Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_statistics_details analysis was for tongue tumor number; LOD: 2.75 tongue tumor diameter 634723
qtl_statistics_details Mapmaker/QTL software use for linkage analysis 634723