Crnkl1-ps1 (crooked neck pre-mRNA splicing factor 1, pseudogene 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Crnkl1-ps1 (crooked neck pre-mRNA splicing factor 1, pseudogene 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Crnkl1-ps1
Name: crooked neck pre-mRNA splicing factor 1, pseudogene 1
RGD ID: 7242712
Description:
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: crooked neck pre-mRNA splicing factor-like 1 (Drosophila) pseudogene; LOC116481
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Related Functional Gene: Crnkl1  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr866,894,293 - 6,896,607 (+)NCBIGRCr8
mRatBN7.261,140,615 - 1,142,929 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl61,140,615 - 1,142,918 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx61,362,744 - 1,365,073 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.061,672,026 - 1,674,356 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.061,196,426 - 1,198,757 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0618,349,226 - 18,351,540 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0628,249,112 - 28,251,426 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera6957,687 - 960,014 (+)NCBICelera
Cytogenetic Map6q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15489334   PMID:15632090  


Genomics


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6197587946975879Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6197587946975879Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6144788383Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6197587946975879Rat
2293706Bmd20Bone mineral density QTL 204.30.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)6125740059Rat
2292616Ept15Estrogen-induced pituitary tumorigenesis QTL 154.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6144788383Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6197587946975879Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6186868070Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6323998948239989Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6323998948239989Rat
1300128Rf16Renal function QTL 163.89renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6140163351Rat
70196BpQTLcluster7Blood pressure QTL cluster 76.82arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6120510098Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6323998948239989Rat
1358190Ept1Estrogen-induced pituitary tumorigenesis QTL 14.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6144788383Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6323998948239989Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6197587946975879Rat

Markers in Region
AU022874  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23133,340,200 - 133,341,018 (+)MAPPERmRatBN7.2
mRatBN7.261,142,239 - 1,142,445 (-)MAPPERmRatBN7.2
Rnor_6.0618,349,710 - 18,349,915NCBIRnor6.0
Rnor_6.03140,127,552 - 140,128,369NCBIRnor6.0
Rnor_5.0628,249,596 - 28,249,801UniSTSRnor5.0
Rnor_5.03146,547,713 - 146,548,530UniSTSRnor5.0
RGSC_v3.43134,540,543 - 134,541,360UniSTSRGSC3.4
RGSC_v3.4617,490,336 - 17,490,541UniSTSRGSC3.4
Celera6959,312 - 959,517UniSTS
Celera3132,205,323 - 132,206,140UniSTS
Cytogenetic Map3q41UniSTS
RH143622  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.261,142,376 - 1,142,663 (-)MAPPERmRatBN7.2
Rnor_6.03140,127,068 - 140,127,620NCBIRnor6.0
Rnor_6.0618,349,492 - 18,349,778NCBIRnor6.0
Rnor_5.0628,249,378 - 28,249,664UniSTSRnor5.0
Rnor_5.03146,547,229 - 146,547,781UniSTSRnor5.0
RGSC_v3.43134,539,206 - 134,540,611UniSTSRGSC3.4
RGSC_v3.4617,490,118 - 17,490,404UniSTSRGSC3.4
Celera6959,449 - 959,735UniSTS
Celera3132,204,005 - 132,205,391UniSTS
Cytogenetic Map3q41UniSTS
UniSTS:479086  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.261,142,217 - 1,142,756 (-)MAPPERmRatBN7.2
Rnor_6.0618,349,399 - 18,349,937NCBIRnor6.0
Rnor_5.0628,249,285 - 28,249,823UniSTSRnor5.0
RGSC_v3.4617,490,025 - 17,490,563UniSTSRGSC3.4
Celera6959,290 - 959,828UniSTS
Cytogenetic Map3q41UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSRNOT00000061588   ⟹   ENSRNOP00000073513
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl61,140,615 - 1,142,918 (+)Ensembl
Protein Sequences
GenBank Protein EDM02604 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Acc Id: ENSRNOP00000073513   ⟸   ENSRNOT00000061588

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-38813 BioCyc
Ensembl Genes ENSRNOG00000040045 Ensembl
NCBI Gene LOC116481 ENTREZGENE
PhenoGen Crnkl1-ps1 PhenoGen
RatGTEx ENSRNOG00000040045 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-11-19 Crnkl1-ps1  crooked neck pre-mRNA splicing factor 1, pseudogene 1  Crnkl1-ps1  crooked neck pre-mRNA splicing factor-like 1 (Drosophila) pseudogene  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-04-17 Crnkl1-ps1  crooked neck pre-mRNA splicing factor-like 1 (Drosophila) pseudogene  LOC116481  crooked neck pre-mRNA splicing factor-like 1 (Drosophila) pseudogene  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-04-16 LOC116481  crooked neck pre-mRNA splicing factor-like 1 (Drosophila) pseudogene      Symbol and Name status set to provisional 70820 PROVISIONAL