Ehd3 (EH-domain containing 3) - Rat Genome Database

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Gene: Ehd3 (EH-domain containing 3) Rattus norvegicus
Analyze
Symbol: Ehd3
Name: EH-domain containing 3
RGD ID: 621762
Description: Predicted to enable ATP binding activity; GTP binding activity; and calcium ion binding activity. Predicted to be involved in several processes, including Golgi to lysosome transport; endosomal transport; and regulation of heart contraction. Predicted to act upstream of or within regulation of cardiac muscle cell membrane potential. Predicted to be located in ciliary pocket membrane. Predicted to be active in cytoplasmic vesicle; perinuclear region of cytoplasm; and plasma membrane. Orthologous to human EHD3 (EH domain containing 3); PARTICIPATES IN endocytosis pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2-methoxyethanol; 3,7-dihydropurine-6-thione.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: EH domain-containing protein 3; Ehd2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2621,640,861 - 21,665,601 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl621,639,290 - 21,665,236 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx621,969,572 - 21,994,301 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0622,285,418 - 22,310,143 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0621,765,853 - 21,790,578 (-)NCBIRnor_WKY
Rnor_6.0625,076,012 - 25,102,457 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl625,074,955 - 25,100,977 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0634,923,729 - 34,949,869 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4621,638,705 - 21,686,023 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1621,641,657 - 21,688,976 (-)NCBI
Celera621,191,963 - 21,214,991 (-)NCBICelera
Cytogenetic Map6q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
2-methoxyethanol  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,7-dihydropurine-6-thione  (EXP)
3-methylcholanthrene  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4-hydroxyphenyl retinamide  (ISO)
4-phenylbutyric acid  (ISO)
5-aza-2'-deoxycytidine  (ISO)
Aflatoxin B2 alpha  (ISO)
aldehydo-D-glucose  (EXP)
ammonium chloride  (EXP)
aristolochic acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
C60 fullerene  (EXP)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloroprene  (EXP)
choline  (ISO)
cisplatin  (ISO)
D-glucose  (EXP)
dexamethasone  (ISO)
dibutyl phthalate  (EXP)
dimethylarsinic acid  (ISO)
dioxygen  (EXP)
doxorubicin  (ISO)
endosulfan  (EXP)
epoxiconazole  (ISO)
ethanol  (ISO)
fluoranthene  (ISO)
folic acid  (ISO)
gentamycin  (EXP)
glucose  (EXP)
hydrogen sulfide  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
mercaptopurine  (EXP)
methidathion  (ISO)
nimesulide  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
propiconazole  (ISO)
purine-6-thiol  (EXP)
rac-lactic acid  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
starch  (EXP)
tamoxifen  (ISO)
tetrachloromethane  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. EHD3: a protein that resides in recycling tubular and vesicular membrane structures and interacts with EHD1. Galperin E, etal., Traffic 2002 Aug;3(8):575-89.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. EHD2 interacts with the insulin-responsive glucose transporter (GLUT4) in rat adipocytes and may participate in insulin-induced GLUT4 recruitment. Park SY, etal., Biochemistry 2004 Jun 15;43(23):7552-62.
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. GOA pipeline RGD automated data pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11423532   PMID:17233914   PMID:17251388   PMID:17634366   PMID:19139087   PMID:20489164   PMID:21423176   PMID:21791287   PMID:25686250   PMID:25825486   PMID:29476059  


Genomics

Comparative Map Data
Ehd3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2621,640,861 - 21,665,601 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl621,639,290 - 21,665,236 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx621,969,572 - 21,994,301 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0622,285,418 - 22,310,143 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0621,765,853 - 21,790,578 (-)NCBIRnor_WKY
Rnor_6.0625,076,012 - 25,102,457 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl625,074,955 - 25,100,977 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0634,923,729 - 34,949,869 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4621,638,705 - 21,686,023 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1621,641,657 - 21,688,976 (-)NCBI
Celera621,191,963 - 21,214,991 (-)NCBICelera
Cytogenetic Map6q13NCBI
EHD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38231,234,152 - 31,269,451 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl231,234,152 - 31,269,451 (+)EnsemblGRCh38hg38GRCh38
GRCh37231,457,018 - 31,492,317 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36231,310,707 - 31,344,764 (+)NCBINCBI36Build 36hg18NCBI36
Build 34231,368,853 - 31,402,911NCBI
Celera231,299,596 - 31,333,966 (+)NCBICelera
Cytogenetic Map2p23.1NCBI
HuRef231,194,543 - 31,228,913 (+)NCBIHuRef
CHM1_1231,387,489 - 31,421,882 (+)NCBICHM1_1
T2T-CHM13v2.0231,278,316 - 31,313,593 (+)NCBIT2T-CHM13v2.0
Ehd3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391774,111,836 - 74,139,088 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1774,111,129 - 74,139,089 (+)EnsemblGRCm39 Ensembl
GRCm381773,804,841 - 73,832,093 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1773,804,134 - 73,832,094 (+)EnsemblGRCm38mm10GRCm38
MGSCv371774,154,181 - 74,181,433 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361773,709,754 - 73,736,970 (+)NCBIMGSCv36mm8
Celera1778,096,325 - 78,123,512 (+)NCBICelera
Cytogenetic Map17E2NCBI
cM Map1745.2NCBI
Ehd3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546912,953,645 - 12,984,430 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546912,953,800 - 12,984,296 (+)NCBIChiLan1.0ChiLan1.0
EHD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A31,317,432 - 31,353,312 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A31,317,432 - 31,353,312 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A31,245,908 - 31,280,485 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
EHD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11724,828,289 - 24,854,990 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1724,828,372 - 24,853,400 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1724,622,571 - 24,649,257 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01725,392,047 - 25,418,779 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1725,392,095 - 25,417,697 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11724,695,316 - 24,722,054 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01724,757,373 - 24,784,106 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01724,857,360 - 24,884,084 (+)NCBIUU_Cfam_GSD_1.0
Ehd3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629268,943,443 - 68,974,729 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364931,864,836 - 1,896,079 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EHD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3108,100,401 - 108,134,906 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13108,103,631 - 108,135,161 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
EHD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11476,237,345 - 76,271,557 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1476,236,246 - 76,271,546 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604535,801,161 - 35,835,035 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ehd3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473813,032,604 - 13,062,795 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473813,033,491 - 13,062,795 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ehd3
124 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:32
Count of miRNA genes:32
Interacting mature miRNAs:32
Transcripts:ENSRNOT00000010419
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738023Alc17Alcohol consumption QTL 173.10.003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)6127574569Rat
1354616Despr12Despair related QTL 120.0012locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)6127574569Rat
1549905Stresp10Stress response QTL 106.830.0066stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)6127574569Rat
2300176Bmd51Bone mineral density QTL 5111.70.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)6127574569Rat
2300190Bmd52Bone mineral density QTL 5211.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)6127574569Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)6134235784Rat
1578758Tcas9Tongue tumor susceptibility QTL 93.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)6137618905Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6139036266Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6141223769Rat
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6141223769Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6141223769Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6141223769Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6141223769Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6142487980Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6142487980Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6142487980Rat
7411584Foco4Food consumption QTL 44.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6142838846Rat
738024Sach5Saccharine consumption QTL 53.90.00039consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)6143394190Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
1300128Rf16Renal function QTL 163.89renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449734434305Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61173566972593685Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
1359023Bp272Blood pressure QTL 2722.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)61653614027261739Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)61653614071636405Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)62033877762613667Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat

Markers in Region
RH142835  
Rat AssemblyChrPosition (strand)SourceJBrowse
RH 3.4 Map8212.2UniSTS
Cytogenetic Map6q13UniSTS
RH141270  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2621,640,510 - 21,640,702 (-)MAPPERmRatBN7.2
Rnor_6.0625,101,042 - 25,101,233NCBIRnor6.0
Rnor_5.0634,948,457 - 34,948,648UniSTSRnor5.0
RGSC_v3.4621,638,355 - 21,638,546UniSTSRGSC3.4
Celera621,191,613 - 21,191,804UniSTS
Cytogenetic Map6q13UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 20 56 40 19 40 3 74 34 38 11
Low 1 23 1 1 1 8 8 1 3 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000010419   ⟹   ENSRNOP00000010419
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl621,639,290 - 21,665,236 (-)Ensembl
Rnor_6.0 Ensembl625,076,147 - 25,100,883 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000084773   ⟹   ENSRNOP00000068716
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl621,639,290 - 21,665,206 (-)Ensembl
Rnor_6.0 Ensembl625,074,955 - 25,100,977 (+)Ensembl
RefSeq Acc Id: NM_138890   ⟹   NP_620245
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2621,640,861 - 21,665,601 (-)NCBI
Rnor_6.0625,076,147 - 25,100,883 (+)NCBI
Rnor_5.0634,923,729 - 34,949,869 (+)NCBI
RGSC_v3.4621,638,705 - 21,686,023 (-)RGD
Celera621,191,963 - 21,214,991 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_620245 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAM14604 (Get FASTA)   NCBI Sequence Viewer  
  EDM02853 (Get FASTA)   NCBI Sequence Viewer  
  Q8R491 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_620245   ⟸   NM_138890
- UniProtKB: Q8R491 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000068716   ⟸   ENSRNOT00000084773
RefSeq Acc Id: ENSRNOP00000010419   ⟸   ENSRNOT00000010419
Protein Domains
Dynamin-type G   EF-hand   EH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8R491-F1-model_v2 AlphaFold Q8R491 1-535 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694424
Promoter ID:EPDNEW_R4949
Type:initiation region
Name:Ehd3_1
Description:EH-domain containing 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0625,076,191 - 25,076,251EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621762 AgrOrtholog
BioCyc Gene G2FUF-38425 BioCyc
Ensembl Genes ENSRNOG00000007744 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000010419 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000068716.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000010419 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000084773.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro DUF5600 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Dynamin_N UniProtKB/Swiss-Prot
  EF-hand-dom_pair UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EH_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EHD1/EHD3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EHD_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G_DYNAMIN_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GTP_binding_domain UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:192249 UniProtKB/Swiss-Prot
NCBI Gene 192249 ENTREZGENE
PANTHER PTHR11216:SF67 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF5600 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Dynamin_N UniProtKB/Swiss-Prot
  EF-hand_4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EHD_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MMR_HSR1 UniProtKB/TrEMBL
PhenoGen Ehd3 PhenoGen
PROSITE EF_HAND_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G_DYNAMIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PS50031 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00027 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JTH6_RAT UniProtKB/TrEMBL
  EHD3_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Ehd3  EH-domain containing 3      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Ehd3  EH-domain containing 3      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_function interacts with GLUT4 in rat adipocytes 1304334