|
|
ACI/EurMcwi (MCW)
|
|
| Sequenced By: |
Medical College of Wisconsin (Dr. Howard Jacob) |
| Platform: |
Illumina HiSeq 2000 |
| Secondary Analysis: |
BWA v0.5.9-r16 and GATK v1.3-14 |
|
|
|
|
|
|
BDIX.Cg-Tal/NemOda (KyushuU)
|
|
| Sequenced By: |
Kyushu University (Dr. Mikita Suyama)
Kyoto University (Dr. Takashi Kuramoto) |
| Platform: |
Illumina NextSeq 500 |
| Secondary Analysis: |
BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2) |
| Breeder: |
NBRP-Rat/Kyoto University |
| Grant Information: |
supported in part by the Cooperative Research Project Program of the Medical Institute of Bioregulation, Kyushu University, and the Genome Information Upgrading Program of the National BioResource Project, Japan Agency for Medical Research and Development |
|
|
BDIX/NemOda (KyushuU)
|
|
| Sequenced By: |
Kyushu University (Dr. Mikita Suyama)
Kyoto University (Dr. Takashi Kuramoto) |
| Platform: |
Illumina NextSeq 500 |
| Secondary Analysis: |
BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2) |
| Breeder: |
NBRP-Rat/Kyoto University |
| Grant Information: |
supported in part by the Cooperative Research Project Program of the Medical Institute of Bioregulation, Kyushu University, and the Genome Information Upgrading Program of the National BioResource Project, Japan Agency for Medical Research and Development |
|
|
|
|
|
|
|
|
BN/SsNSlc (KyushuU)
|
|
| Sequenced By: |
Kyushu University (Dr. Mikita Suyama)
Kyoto University (Dr. Takashi Kuramoto) |
| Platform: |
Illumina NextSeq 500 |
| Secondary Analysis: |
BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2) |
| Breeder: |
NBRP-Rat/Kyoto University |
| Grant Information: |
supported in part by the Cooperative Research Project Program of the Medical Institute of Bioregulation, Kyushu University, and the Genome Information Upgrading Program of the National BioResource Project, Japan Agency for Medical Research and Development |
|
|
BUF/MNa (KyushuU)
|
|
| Sequenced By: |
Kyushu University (Dr. Mikita Suyama)
Kyoto University (Dr. Takashi Kuramoto) |
| Platform: |
Illumina NextSeq 500 |
| Secondary Analysis: |
BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2) |
| Breeder: |
NBRP-Rat/Kyoto University |
| Grant Information: |
supported in part by the Cooperative Research Project Program of the Medical Institute of Bioregulation, Kyushu University, and the Genome Information Upgrading Program of the National BioResource Project, Japan Agency for Medical Research and Development |
|
|
|
|
COP/CrCrl (MCW & UW)
|
|
| Sequenced By: |
Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull) |
| Platform: |
Illumina HiSeq 2000 |
| Secondary Analysis: |
BWA v0.5.9-r16 and GATK v2.3-5 |
| Breeder: |
Charles River Laboratories |
| Grant Information: |
NIH (CA77876) |
|
|
Crl:SD (UDEL)
|
|
| Secondary Analysis: |
GATK (HaplotypeCaller v.3.1-1, VariantAnnotator v.3.1-1, SnpEff v.3.6) |
|
|
|
|
DOB/Oda (KyushuU)
|
|
| Sequenced By: |
Kyushu University (Dr. Mikita Suyama)
Kyoto University (Dr. Takashi Kuramoto) |
| Platform: |
Illumina NextSeq 500 |
| Secondary Analysis: |
BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2) |
| Breeder: |
NBRP-Rat/Kyoto University |
| Grant Information: |
supported in part by the Cooperative Research Project Program of the Medical Institute of Bioregulation, Kyushu University, and the Genome Information Upgrading Program of the National BioResource Project, Japan Agency for Medical Research and Development |
|
|
F344/DuCrlCrlj (KyushuU)
|
|
| Sequenced By: |
Kyushu University (Dr. Mikita Suyama)
Kyoto University (Dr. Takashi Kuramoto) |
| Platform: |
Illumina NextSeq 500 |
| Secondary Analysis: |
BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2) |
| Breeder: |
NBRP-Rat/Kyoto University |
| Grant Information: |
supported in part by the Cooperative Research Project Program of the Medical Institute of Bioregulation, Kyushu University, and the Genome Information Upgrading Program of the National BioResource Project, Japan Agency for Medical Research and Development |
|
|
F344/Jcl (KyushuU)
|
|
| Sequenced By: |
Kyushu University (Dr. Mikita Suyama)
Kyoto University (Dr. Takashi Kuramoto) |
| Platform: |
Illumina NextSeq 500 |
| Secondary Analysis: |
BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2) |
| Breeder: |
NBRP-Rat/Kyoto University |
| Grant Information: |
supported in part by the Cooperative Research Project Program of the Medical Institute of Bioregulation, Kyushu University, and the Genome Information Upgrading Program of the National BioResource Project, Japan Agency for Medical Research and Development |
|
|
|
|
|
|
|
|
|
|
F344/NSlc (KyushuU)
|
|
| Sequenced By: |
Kyushu University (Dr. Mikita Suyama)
Kyoto University (Dr. Takashi Kuramoto) |
| Platform: |
Illumina NextSeq 500 |
| Secondary Analysis: |
BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2) |
| Breeder: |
NBRP-Rat/Kyoto University |
| Grant Information: |
supported in part by the Cooperative Research Project Program of the Medical Institute of Bioregulation, Kyushu University, and the Genome Information Upgrading Program of the National BioResource Project, Japan Agency for Medical Research and Development |
|
|
F344/Stm (KyushuU)
|
|
| Sequenced By: |
Kyushu University (Dr. Mikita Suyama)
Kyoto University (Dr. Takashi Kuramoto) |
| Platform: |
Illumina NextSeq 500 |
| Secondary Analysis: |
BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2) |
| Breeder: |
NBRP-Rat/Kyoto University |
| Grant Information: |
supported in part by the Cooperative Research Project Program of the Medical Institute of Bioregulation, Kyushu University, and the Genome Information Upgrading Program of the National BioResource Project, Japan Agency for Medical Research and Development |
|
|
|
|
FHH/EurMcwi (MCW)
|
|
| Sequenced By: |
Medical College of Wisconsin (Dr. Howard Jacob) |
| Platform: |
Illumina HiSeq 2000 |
| Secondary Analysis: |
BWA v0.5.9-r16 and GATK v1.3-14 |
|
|
|
|
FHL/EurMcwi (MCW)
|
|
| Sequenced By: |
Medical College of Wisconsin (Dr. Howard Jacob) |
| Platform: |
Illumina HiSeq 2000 |
| Secondary Analysis: |
BWA v0.5.9-r16 and GATK v1.3-14 |
|
|
GH/OmrMcwi (MCW)
|
|
| Sequenced By: |
Medical College of Wisconsin (Dr. Howard Jacob) |
| Platform: |
Illumina HiSeq 2000 |
| Secondary Analysis: |
BWA v0.5.9-r16 and GATK v2.3-5 |
|
|
|
|
HTX/Kyo (KyushuU)
|
|
| Sequenced By: |
Kyushu University (Dr. Mikita Suyama)
Kyoto University (Dr. Takashi Kuramoto) |
| Platform: |
Illumina NextSeq 500 |
| Secondary Analysis: |
BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2) |
| Breeder: |
NBRP-Rat/Kyoto University |
| Grant Information: |
supported in part by the Cooperative Research Project Program of the Medical Institute of Bioregulation, Kyushu University, and the Genome Information Upgrading Program of the National BioResource Project, Japan Agency for Medical Research and Development |
|
|
HWY/Slc (KyushuU)
|
|
| Sequenced By: |
Kyushu University (Dr. Mikita Suyama)
Kyoto University (Dr. Takashi Kuramoto) |
| Platform: |
Illumina NextSeq 500 |
| Secondary Analysis: |
BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2) |
| Breeder: |
NBRP-Rat/Kyoto University |
| Grant Information: |
supported in part by the Cooperative Research Project Program of the Medical Institute of Bioregulation, Kyushu University, and the Genome Information Upgrading Program of the National BioResource Project, Japan Agency for Medical Research and Development |
|
|
IS-Tlk/Kyo (KyushuU)
|
|
| Sequenced By: |
Kyushu University (Dr. Mikita Suyama)
Kyoto University (Dr. Takashi Kuramoto) |
| Platform: |
Illumina NextSeq 500 |
| Secondary Analysis: |
BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2) |
| Breeder: |
NBRP-Rat/Kyoto University |
| Grant Information: |
supported in part by the Cooperative Research Project Program of the Medical Institute of Bioregulation, Kyushu University, and the Genome Information Upgrading Program of the National BioResource Project, Japan Agency for Medical Research and Development |
|
|
IS/Kyo (KyushuU)
|
|
| Sequenced By: |
Kyushu University (Dr. Mikita Suyama)
Kyoto University (Dr. Takashi Kuramoto) |
| Platform: |
Illumina NextSeq 500 |
| Secondary Analysis: |
BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2) |
| Breeder: |
NBRP-Rat/Kyoto University |
| Grant Information: |
supported in part by the Cooperative Research Project Program of the Medical Institute of Bioregulation, Kyushu University, and the Genome Information Upgrading Program of the National BioResource Project, Japan Agency for Medical Research and Development |
|
|
KFRS3B/Kyo (KyushuU)
|
|
| Sequenced By: |
Kyushu University (Dr. Mikita Suyama)
Kyoto University (Dr. Takashi Kuramoto) |
| Platform: |
Illumina NextSeq 500 |
| Secondary Analysis: |
BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2) |
| Breeder: |
NBRP-Rat/Kyoto University |
| Grant Information: |
supported in part by the Cooperative Research Project Program of the Medical Institute of Bioregulation, Kyushu University, and the Genome Information Upgrading Program of the National BioResource Project, Japan Agency for Medical Research and Development |
|
|
LE/OrlBarth (UDEL)
|
|
| Secondary Analysis: |
GATK (HaplotypeCaller v.3.1-1, VariantAnnotator v.3.1-1, SnpEff v.3.6) |
|
|
|
|
LE/Stm (KyushuU)
|
|
| Sequenced By: |
Kyushu University (Dr. Mikita Suyama)
Kyoto University (Dr. Takashi Kuramoto) |
| Platform: |
Illumina NextSeq 500 |
| Secondary Analysis: |
BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2) |
| Breeder: |
NBRP-Rat/Kyoto University |
| Grant Information: |
supported in part by the Cooperative Research Project Program of the Medical Institute of Bioregulation, Kyushu University, and the Genome Information Upgrading Program of the National BioResource Project, Japan Agency for Medical Research and Development |
|
|
|
|
LEC/Tj (KyushuU)
|
|
| Sequenced By: |
Kyushu University (Dr. Mikita Suyama)
Kyoto University (Dr. Takashi Kuramoto) |
| Platform: |
Illumina NextSeq 500 |
| Secondary Analysis: |
BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2) |
| Breeder: |
NBRP-Rat/Kyoto University |
| Grant Information: |
supported in part by the Cooperative Research Project Program of the Medical Institute of Bioregulation, Kyushu University, and the Genome Information Upgrading Program of the National BioResource Project, Japan Agency for Medical Research and Development |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
NIG-III/Hok (KyushuU)
|
|
| Sequenced By: |
Kyushu University (Dr. Mikita Suyama)
Kyoto University (Dr. Takashi Kuramoto) |
| Platform: |
Illumina NextSeq 500 |
| Secondary Analysis: |
BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2) |
| Breeder: |
NBRP-Rat/Kyoto University |
| Grant Information: |
supported in part by the Cooperative Research Project Program of the Medical Institute of Bioregulation, Kyushu University, and the Genome Information Upgrading Program of the National BioResource Project, Japan Agency for Medical Research and Development |
|
|
RCS/Kyo (KyushuU)
|
|
| Sequenced By: |
Kyushu University (Dr. Mikita Suyama)
Kyoto University (Dr. Takashi Kuramoto) |
| Platform: |
Illumina NextSeq 500 |
| Secondary Analysis: |
BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2) |
| Breeder: |
NBRP-Rat/Kyoto University |
| Grant Information: |
supported in part by the Cooperative Research Project Program of the Medical Institute of Bioregulation, Kyushu University, and the Genome Information Upgrading Program of the National BioResource Project, Japan Agency for Medical Research and Development |
|
|
|
|
SBH/Ygl (MCW)
|
|
| Sequenced By: |
Medical College of Wisconsin (Dr. Howard Jacob) |
| Platform: |
Illumina HiSeq 2000 |
| Secondary Analysis: |
BWA-0.5.8c, GATK-v1.0.6001, samtools, Picard |
| Breeder: |
Medical College of Wisconsin |
|
|
|
|
SBN/Ygl (MCW)
|
|
| Sequenced By: |
Medical College of Wisconsin (Dr. Howard Jacob) |
| Platform: |
Illumina HiSeq 2000 |
| Secondary Analysis: |
BWA-0.5.8c, GATK-v1.0.6001, samtools, Picard |
| Breeder: |
Medical College of Wisconsin |
|
|
SDLEF7/Barth (UDEL)
|
|
| Secondary Analysis: |
GATK (HaplotypeCaller v.3.1-1, VariantAnnotator v.3.1-1, SnpEff v.3.6) |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
SR/JrHsd (MCW)
|
|
| Sequenced By: |
Medical College of Wisconsin (Dr. Howard Jacob) |
| Platform: |
Illumina HiSeq 2000 |
| Secondary Analysis: |
BWA v0.5.9-r16 and GATK v1.3-14 |
| Breeder: |
Harlan Laboratories |
|
|
|
|
|
|
SS/JrHsdMcwi (MCW)
|
|
| Sequenced By: |
Medical College of Wisconsin (Dr. Howard Jacob) |
| Platform: |
Illumina HiSeq 2000 |
| Secondary Analysis: |
BWA v0.5.9-r16 and GATK v1.3-14 |
| Grant Information: |
R01 HL089930 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
ZF (KyushuU)
|
|
| Sequenced By: |
Kyushu University (Dr. Mikita Suyama)
Kyoto University (Dr. Takashi Kuramoto) |
| Platform: |
Illumina NextSeq 500 |
| Secondary Analysis: |
BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2) |
| Breeder: |
NBRP-Rat/Kyoto University |
| Grant Information: |
supported in part by the Cooperative Research Project Program of the Medical Institute of Bioregulation, Kyushu University, and the Genome Information Upgrading Program of the National BioResource Project, Japan Agency for Medical Research and Development |
|
|
ZFDM (KyushuU)
|
|
| Sequenced By: |
Kyushu University (Dr. Mikita Suyama)
Kyoto University (Dr. Takashi Kuramoto) |
| Platform: |
Illumina NextSeq 500 |
| Secondary Analysis: |
BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2) |
| Breeder: |
NBRP-Rat/Kyoto University |
| Grant Information: |
supported in part by the Cooperative Research Project Program of the Medical Institute of Bioregulation, Kyushu University, and the Genome Information Upgrading Program of the National BioResource Project, Japan Agency for Medical Research and Development |
|
|
Gene-Chemical Interaction Annotations
