AU046796 Marker Search Result - Rat Genome Database
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Marker: AU046796

Symbol: AU046796
Also known as:
RGD ID: 5068992
Expected Size: 219 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0633,970,593 - 33,970,811NCBIRnor6.0
Rnor_6.0651,450,431 - 51,452,043NCBIRnor6.0
Rnor_5.0661,091,895 - 61,093,507UniSTSRnor5.0
Rnor_5.0643,751,868 - 43,752,086UniSTSRnor5.0
RGSC_v3.4650,426,861 - 50,428,473UniSTSRGSC3.4
RGSC_v3.4632,338,488 - 32,338,706UniSTSRGSC3.4
Celera647,953,346 - 47,954,958UniSTS
Celera631,096,212 - 31,096,430UniSTS


Annotation


References - curated
1. RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer GAGTTAAATCCCCAGCCCC
Reverse Primer AGTTTGCTGGGCAGTCAGT
 

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2322698LOC100360151ribosomal protein S21-like63399902434016275Rat
9404565LOC103692596uncharacterized LOC10369259663401661634024469Rat
735179Laptm4alysosomal protein transmembrane 4 alpha63404213234059960Rat
1305085Matn3matrilin 363407142834091048Rat
1564116Wdr35WD repeat domain 3563409429134152048Rat
1585566Ttc32tetratricopeptide repeat domain 3263415497334161857Rat
1586345LOC689955similar to heat shock protein 863455327534555392Rat
1588772LOC689716hypothetical protein LOC68971663479923834800670Rat
9334909LOC103692597uncharacterized LOC10369259763500530035081023Rat
1311807Osr1odd-skipped related transcription factor 163531443135321458Rat
11455275LOC108351357uncharacterized LOC10835135763545125635459490Rat
7581350LOC10254750460S ribosomal protein L38-like63607890336091463Rat
1309705Nt5c1b5'-nucleotidase, cytosolic IB63608945036106843Rat
1565196Rdh14retinol dehydrogenase 1463610692636112069Rat
6494941LOC100911076presenilins-associated rhomboid-like protein, mitochondrial-like63673733736738464Rat
621527Kcns3potassium voltage-gated channel, modifier subfamily S, member 363676404036819810Rat
1587516Msgn1mesogenin 163687616536876805Rat
1559792Gen1GEN1 Holliday junction 5' flap endonuclease63691006436940868Rat
7591084LOC102547959uncharacterized LOC10254795963691238836928310Rat
1311214Smc6structural maintenance of chromosomes 663694123336995920Rat
3966Vsnl1visinin-like 163700136037121969Rat
1583700LOC503019similar to mitochondrial ribosomal protein S1063714073237141423Rat
2322652Rad51ap2RAD51 associated protein 263714474737151642Rat
9458081LOC103690076RAD51-associated protein 2-like63715673837206070Rat
1586329LOC689971similar to histone aminotransferase 163734037237352990Rat
1586335LOC689965similar to ribosomal protein L2763736404537364495Rat
9160282LOC103692598uncharacterized LOC10369259863747540137479631Rat
1305961CyriaCYFIP related Rac1 interactor A63755516737661196Rat
9261210LOC103692599uncharacterized LOC10369259963757201437576630Rat
2322296LOC100360357cytochrome c oxidase, subunit VIIc-like63783258837832866Rat
1565679RGD1565679similar to 60S ribosomal protein L27a (L29)63800657138052841Rat
11423259LOC10835120140S ribosomal protein S15a pseudogene63804160638042043Rat
11364133Trnav-uac3transfer RNA valine (anticodon UAC) 363808503738085109Rat
1584995MycnMYCN proto-oncogene, bHLH transcription factor63822255438228419Rat
9410455LOC10369261140S ribosomal protein S16-like63823578738236283Rat
619903Ddx1DEAD-box helicase 163842289238453762Rat
1585140NbasNBAS subunit of NRZ tethering complex63847477338777146Rat
11488723LOC108351202ferritin light chain 1 pseudogene63857150438572788Rat
7549521LOC102548773uncharacterized LOC10254877363882286138849103Rat
11372635LOC108351203uncharacterized LOC10835120363884873638856028Rat
1585125LOC690088similar to mortality factor 4 like 163903455439035520Rat
11498460LOC108351358uncharacterized LOC10835135863911489339134890Rat
1305779Lratd1LRAT domain containing 163935828539363458Rat
9446459LOC103692600glyceraldehyde-3-phosphate dehydrogenase pseudogene63940274639403825Rat
11372644LOC108351204uncharacterized LOC10835120463950409739516217Rat
2319366LOC100361808F-box and WD repeat domain containing 2-like63965582239657209Rat
7715436LOC102555226uncharacterized LOC10255522663986161339880583Rat
11498435LOC108351205uncharacterized LOC10835120563997894040056684Rat
11377656LOC108351206uncharacterized LOC10835120664009299340159129Rat
1584006LOC690166similar to Eukaryotic translation initiation factor 3 subunit 9 (eIF-3 eta) (eIF3 p116) (eIF3 p110) (eIF3b) (Prt1 homolog) (hPrt1)64029892140301186Rat
1583858LOC298902similar to thymine DNA glycosylase isoform 264051781940518998Rat
7515781LOC102556604uncharacterized LOC10255660464069432440713350Rat
7557098LOC102555705uncharacterized LOC10255570564080505840828898Rat
1564451Trib2tribbles pseudokinase 264101672241040972Rat
11402704LOC108351208uncharacterized LOC10835120864102456341034056Rat
11396519LOC108351207uncharacterized LOC10835120764105744441069494Rat
9412502LOC103692601uncharacterized LOC10369260164115838341186736Rat
7657676LOC102555864uncharacterized LOC10255586464118620641193574Rat
7500641LOC102555927uncharacterized LOC10255592764124337141263351Rat
9269822LOC103692602uncharacterized LOC10369260264126697441277657Rat
2321713LOC100360644ribosomal protein L11-like64138586641386410Rat
7501955LOC102550954uncharacterized LOC10255095464173769941777065Rat
1307646Lpin1lipin 164179621441905149Rat
70962Ntsr2neurotensin receptor 264191706541923780Rat
1564091Greb1growth regulating estrogen receptor binding 164193294142002770Rat
631412E2f6E2F transcription factor 664209251342108692Rat
3590Rock2Rho-associated coiled-coil containing protein kinase 264218086442289910Rat
1306818Slc66a3solute carrier family 66 member 364229067842302451Rat
1582838LOC690276hypothetical protein LOC69027664230678842313322Rat
631414Kcnf1potassium voltage-gated channel modifier subfamily F member 164247106042473738Rat
11520175LOC108351359uncharacterized LOC10835135964255139442555294Rat
628688Pdia6protein disulfide isomerase family A, member 664256826942585654Rat
1359430Atp6v1c2ATPase H+ transporting V1 subunit C264258545242632289Rat
1359447Nol10nucleolar protein 1064265666142745099Rat
1561890RGD1561890similar to craniofacial development protein 164277746942778374Rat
1597342LOC690346hypothetical protein LOC69034664279285642793963Rat
3227Odc1ornithine decarboxylase 164285252942859142Rat
7505429LOC102551312uncharacterized LOC10255131264286757742872756Rat
11410519LOC108351209uncharacterized LOC10835120964291222542913538Rat
6503469LOC100909414prothymosin alpha-like64294642242946911Rat
1563157RGD1563157similar to 60S ribosomal protein L3564294733442947705Rat
708375Hpcal1hippocalcin-like 164300192043109083Rat
11466675LOC108351210uncharacterized LOC10835121064309926743102006Rat
1305263Asap2ArfGAP with SH3 domain, ankyrin repeat and PH domain 264323117843348606Rat
9303238LOC103692603uncharacterized LOC10369260364327109543275538Rat
7683736LOC102555735arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2-like64334370243348606Rat
1307810Itgb1bp1integrin subunit beta 1 binding protein 164334892743363633Rat
1305767Cpsf3cleavage and polyadenylation specific factor 364336379243391712Rat
727866Iah1isoamyl acetate hydrolyzing esterase 164339311343400330Rat
620404Adam17ADAM metallopeptidase domain 1764340052543448280Rat
3979Ywhaqtyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta64346329443493816Rat
1596058Taf1bTATA-box binding protein associated factor, RNA polymerase I subunit B64364493143722124Rat
7731406LOC102555986RNA-binding protein 34-like64367698443682162Rat
1305735Grhl1grainyhead-like transcription factor 164373483743795757Rat
11410754LOC108351211uncharacterized LOC10835121164379874043817002Rat
1306646Klf11Kruppel-like factor 1164382981243841649Rat
1596023Cys1cystin 164384493743862131Rat
1598310Rrm2ribonucleotide reductase regulatory subunit M264388462743890818Rat
9129113LOC103692612skin secretory protein xP2-like64400720844010249Rat
1305798Mboat2membrane bound O-acyltransferase domain containing 264400987244135501Rat
9236291LOC103692604serine palmitoyltransferase small subunit A pseudogene64414972844150964Rat
619949Kidins220kinase D-interacting substrate 22064422514244322938Rat
2322644LOC100363605hypothetical protein LOC10036360564434076344345208Rat
2859Id2inhibitor of DNA binding 264436007744361908Rat
7750909LOC102553891uncharacterized LOC10255389164437698444380923Rat
7526561LOC102553989uncharacterized LOC10255398964445231544479415Rat
9103871LOC103692605uncharacterized LOC10369260564450822844534604Rat
9329158LOC103692613NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5-like64455036444550731Rat
7629645LOC102554202uncharacterized LOC10255420264457953944590271Rat
7536096LOC102557053uncharacterized LOC10255705364466270144733569Rat
1583774LOC366583similar to D-3-phosphoglycerate dehydrogenase (3-PGDH)64534576145347209Rat
11494199LOC108351360uncharacterized LOC10835136064548393145489525Rat
1561737Rnf144aring finger protein 144A64550989545629233Rat
11391632LOC108351212uncharacterized LOC10835121264562938845660787Rat
620495Rsad2radical S-adenosyl methionine domain containing 264565594745669083Rat
1305881Cmpk2cytidine/uridine monophosphate kinase 264568324245694824Rat
2318155LOC100362433glutathione peroxidase 864575972445783681Rat
7619289LOC102554354uncharacterized LOC10255435464585435645861949Rat
11370295LOC108351213uncharacterized LOC10835121364587996645885026Rat
6501114LOC100909845phosphoglycerate mutase 1-like64609891446099789Rat
11384778LOC108351214uncharacterized LOC10835121464632698746347420Rat
2318102LOC100362486small nuclear ribonucleoprotein D364643330246451961Rat
11367627LOC108351215uncharacterized LOC10835121564644001946445035Rat
11415852LOC108351361uncharacterized LOC10835136164645782246465954Rat
11401899LOC108351216uncharacterized LOC10835121664660699946610980Rat
69351Sox11SRY-box transcription factor 1164662996746631988Rat
2324519LOC100362535ubiquitin-conjugating enzyme E2E 164674572346746364Rat
11387835LOC108351217uncharacterized LOC10835121764686622246906567Rat
9422695LOC103692606uncharacterized LOC10369260664712867847133057Rat
11407553LOC108351362uncharacterized LOC10835136264720085547203480Rat
2322612LOC100363637nucleophosmin 1-like64770545747706646Rat
1564913Akr1b1-ps1aldo-keto reductase family 1, member B1 (aldose reductase), pseudogene 164772399747725275Rat
1559651Dcdc2cdoublecortin domain containing 2C64773781447812219Rat
7730533LOC102549609ferritin light chain 1-like64778577047786982Rat
621804Allcallantoicase64781298947848068Rat
1309678Colec11collectin sub-family member 1164785776747889961Rat
61907Rps7ribosomal protein S764789952547904389Rat
1309012Rnaseh1ribonuclease H164791618847925582Rat
7678865LOC102547240uncharacterized LOC10254724064792927447936339Rat
727828Adi1acireductone dioxygenase 164794021147947173Rat
1566054Trappc12trafficking protein particle complex subunit 1264795482248020280Rat
1305817Eipr1EARP complex and GARP complex interacting protein 164802177148135241Rat
620550Myt1lmyelin transcription factor 1-like64845238548843443Rat
9217337LOC103692607uncharacterized LOC10369260764856564848568127Rat
11364655LOC108351218uncharacterized LOC10835121864860858748745720Rat
1560694Pxdnperoxidasin64886649648982368Rat
3900Tpothyroid peroxidase64902091849089855Rat
1311276Sntg2syntrophin, gamma 264912308449324530Rat
9305061LOC103692608uncharacterized LOC10369260864935129249355077Rat
1596936LOC678748similar to peroxiredoxin 164938971649393857Rat
1359389Tmem18transmembrane protein 1864952922849534960Rat
1587117Alkal2ALK and LTK ligand 264982472549834921Rat
2020Acp1acid phosphatase 164983606449851714Rat
7574537LOC102551379uncharacterized LOC10255137964983854049841368Rat
1306440Sh3yl1SH3 and SYLF domain containing 164985177849895502Rat
1585983LOC679605similar to HIRA interacting protein 364990492149910229Rat
1564713Fam110cfamily with sequence similarity 110, member C64996847349974730Rat
7690279LOC102554981uncharacterized LOC10255498165009753950204592Rat
7502861LOC102555048uncharacterized LOC10255504865028086050370748Rat
7747059LOC102555103uncharacterized LOC10255510365037810650388066Rat
9288946LOC103692609serine palmitoyltransferase small subunit A pseudogene65050212050505751Rat
1306311Lamb1laminin subunit beta 165052879650596593Rat
735073Dlddihydrolipoamide dehydrogenase65059767750618694Rat
620623Slc26a3solute carrier family 26 member 365072508550766306Rat
1310703Cbll1Cbl proto-oncogene like 165077271850786861Rat
7499548LOC102555378uncharacterized LOC10255537865078699350811371Rat
3293Slc26a4solute carrier family 26 member 465080910350848443Rat
11449637LOC108351219uncharacterized LOC10835121965086432650869489Rat
11492151LOC108351220uncharacterized LOC10835122065087336050875303Rat
1359431Bcap29B-cell receptor-associated protein 2965088375850923743Rat
1311445Dus4ldihydrouridine synthase 4-like65092598750943546Rat
1563296Cog5component of oligomeric golgi complex 565095386851230860Rat
1310848Gpr22G protein-coupled receptor 2265101242151021253Rat
620444Hbp1HMG-box transcription factor 165123147951257699Rat
7663848LOC10255564560S ribosomal protein L18a-like65124572551246824Rat
3394Prkar2bprotein kinase cAMP-dependent type II regulatory subunit beta65126550951356383Rat

Nucleotide Sequences
GenBank Nucleotide AU046796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH615417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738023Alc17Alcohol consumption QTL 173.10.003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)6135623029Rat
1354616Despr12Despair related QTL 120.0012locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)6135623029Rat
1549905Stresp10Stress response QTL 106.830.0066stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)6135623029Rat
2300176Bmd51Bone mineral density QTL 5111.70.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)6135623029Rat
2300190Bmd52Bone mineral density QTL 5211.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)6135623029Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)6141917988Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6142388212Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6142388212Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6142388212Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6142388212Rat
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6142388212Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6143665660Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6143665660Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6143665660Rat
7411584Foco4Food consumption QTL 44.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6144015370Rat
738024Sach5Saccharine consumption QTL 53.90.00039consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)6144570292Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6175623393Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)6112039346120393Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)6112039375023446Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)62537030111715717Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)6616172276002731Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)6616172276002731Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)67009971115379601Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)71017386255173862Rat
1300128Rf16Renal function QTL 163.89renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)61312295834367603Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)61312295857516539Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61681010761810107Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61681010761810107Rat
8552910Pigfal5Plasma insulin-like growth factor 1 level QTL 54.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)61941788764417887Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)62151530265784818Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62204285484763421Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62204285484763421Rat
8693632Alc27Alcohol consumption QTL 272.20.791drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)63425776653855198Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)63436743680490628Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63499565675623393Rat
634318Bw118Body weight QTL 1183.55abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)63626028860606186Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63626028884763275Rat
1354632Scl29Serum cholesterol level QTL 293.74blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)63760898075023446Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63810630883106308Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)63819641260606431Rat
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)64167904686679046Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64167904686679046Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64167904686679046Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)648432758108268790Rat


Additional Information

Database Acc Id Source(s)
UniSTS 111126 UniSTS