Rbks (ribokinase) - Rat Genome Database

Name: Rbks
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Rbks (ribokinase) Rattus norvegicus

Analyze

Symbol:

Rbks

Name:

ribokinase

RGD ID:

1310064

Description:

Predicted to enable identical protein binding activity. Predicted to be involved in D-ribose catabolic process and carbohydrate phosphorylation. Predicted to be located in cytoplasm and nucleus. Orthologous to human RBKS (ribokinase); PARTICIPATES IN pentose phosphate pathway; ribose 5-phosphate isomerase deficiency pathway; transaldolase deficiency pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; all-trans-retinoic acid.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

LOC362706

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RBKS (ribokinase)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Rbks (ribokinase)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Rbks (ribokinase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RBKS (ribokinase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RBKS (ribokinase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rbks (ribokinase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RBKS (ribokinase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RBKS (ribokinase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rbks (ribokinase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	RBKS (ribokinase)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Mus musculus (house mouse):	Rbks (ribokinase)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	rbks (ribokinase)	Alliance	DIOPT (PhylomeDB\|TreeFam)
Drosophila melanogaster (fruit fly):	CG13369	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Caenorhabditis elegans (roundworm):	F07A11.5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Saccharomyces cerevisiae (baker's yeast):	RBK1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Drosophila melanogaster (fruit fly):	CG17010	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	6	24,747,651 - 24,824,290 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	6	24,747,293 - 24,824,290 (+)	Ensembl
Rnor_6.0	6	26,051,568 - 26,128,762 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	26,051,396 - 26,128,906 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	35,875,881 - 35,953,018 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	24,792,303 - 24,868,759 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	6	24,795,240 - 24,871,665 (+)	NCBI
Celera	6	24,241,936 - 24,318,495 (+)	NCBI		Celera
Cytogenetic Map	6	q14	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-diaminodiphenylmethane (ISO)

afimoxifene (ISO)

aflatoxin B1 (ISO)

aflatoxin B2 (ISO)

all-trans-retinoic acid (EXP)

amiodarone (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (EXP)

chlorohydrocarbon (EXP)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dicrotophos (ISO)

dinophysistoxin 1 (ISO)

folic acid (ISO)

hydrogen peroxide (ISO)

isotretinoin (ISO)

methylmercury chloride (ISO)

nitrofen (EXP)

paracetamol (ISO)

perfluorooctanoic acid (ISO)

quercetin (ISO)

quercitrin (ISO)

silver atom (ISO)

silver(0) (ISO)

sunitinib (ISO)

T-2 toxin (EXP)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

Triptolide (EXP)

tris(2-butoxyethyl) phosphate (ISO)

urethane (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

carbohydrate phosphorylation (IEA)

D-ribose catabolic process (IEA)

Cellular Component

cytoplasm (IEA)

nucleus (IEA)

Molecular Function

ATP binding (IEA)

identical protein binding (ISO)

metal ion binding (IEA)

protein binding (ISO)

ribokinase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

pentose phosphate pathway (IEA,ISO)

ribose 5-phosphate isomerase deficiency pathway (ISO)

transaldolase deficiency pathway (ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	MGD data from the GO Consortium
3.	Pipeline to import KEGG annotations from KEGG into RGD
4.	Pipeline to import SMPDB annotations from SMPDB into RGD
5.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:23376485	PMID:31515488

Genomics

Comparative Map Data

Rbks
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	6	24,747,651 - 24,824,290 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	6	24,747,293 - 24,824,290 (+)	Ensembl
Rnor_6.0	6	26,051,568 - 26,128,762 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	26,051,396 - 26,128,906 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	35,875,881 - 35,953,018 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	24,792,303 - 24,868,759 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	6	24,795,240 - 24,871,665 (+)	NCBI
Celera	6	24,241,936 - 24,318,495 (+)	NCBI		Celera
Cytogenetic Map	6	q14	NCBI

RBKS
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	2	27,781,379 - 27,890,681 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	2	27,781,379 - 27,890,387 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	2	28,004,246 - 28,113,254 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	27,857,770 - 27,966,727 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	2	27,915,916 - 28,024,874	NCBI
Celera	2	27,849,543 - 27,958,241 (-)	NCBI
Cytogenetic Map	2	p23.2	NCBI
HuRef	2	27,745,204 - 27,854,048 (-)	NCBI		HuRef
CHM1_1	2	27,934,998 - 28,043,856 (-)	NCBI		CHM1_1

Rbks
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	31,781,783 - 31,855,042 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	5	31,781,783 - 31,854,971 (-)	Ensembl
GRCm38	5	31,624,439 - 31,697,649 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	31,624,439 - 31,697,627 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	31,926,812 - 31,999,983 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	5	31,901,020 - 31,974,191 (-)	NCBI			mm8
Celera	5	29,103,150 - 29,176,281 (-)	NCBI		Celera
Cytogenetic Map	5	B1	NCBI

Rbks
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955469	9,734,563 - 9,831,127 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955469	9,734,551 - 9,831,397 (-)	NCBI	ChiLan1.0	ChiLan1.0

RBKS
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	2A	27,863,731 - 27,970,950 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	27,863,731 - 27,970,949 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	2A	27,779,074 - 27,886,586 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

RBKS
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	21,793,882 - 21,944,839 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	21,795,203 - 21,944,805 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	21,588,063 - 21,680,924 (-)	NCBI
ROS_Cfam_1.0	17	22,353,775 - 22,447,857 (-)	NCBI
UMICH_Zoey_3.1	17	21,656,410 - 21,749,513 (-)	NCBI
UNSW_CanFamBas_1.0	17	21,707,306 - 21,800,766 (-)	NCBI
UU_Cfam_GSD_1.0	17	21,822,225 - 21,915,075 (-)	NCBI

Rbks
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	65,984,917 - 66,071,164 (-)	NCBI
SpeTri2.0	NW_004936493	4,768,444 - 4,853,273 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RBKS
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	111,328,750 - 111,426,909 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	111,328,758 - 111,426,173 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	118,274,481 - 118,334,590 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RBKS
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	79,733,144 - 79,847,074 (+)	NCBI	ChlSab1.1		chlSab2
ChlSab1.1 Ensembl	14	79,732,967 - 79,846,943 (+)	Ensembl	ChlSab1.1		chlSab2
Vero_WHO_p1.0	NW_023666045	32,303,665 - 32,412,843 (-)	NCBI	Vero_WHO_p1.0

Rbks
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624738	9,795,381 - 9,911,276 (-)	NCBI	HetGla_female_1.0		hetGla2

Position Markers

AI233177

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	24,792,724 - 24,792,929 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	26,096,744 - 26,096,948	NCBI	Rnor6.0
Rnor_5.0	6	35,921,057 - 35,921,261	UniSTS	Rnor5.0
RGSC_v3.4	6	24,837,298 - 24,837,502	UniSTS	RGSC3.4
Celera	6	24,286,932 - 24,287,136	UniSTS
Cytogenetic Map	6	q13	UniSTS

BE097107

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	24,800,805 - 24,801,005 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	26,104,824 - 26,105,023	NCBI	Rnor6.0
Rnor_5.0	6	35,929,137 - 35,929,336	UniSTS	Rnor5.0
RGSC_v3.4	6	24,845,379 - 24,845,578	UniSTS	RGSC3.4
Celera	6	24,295,013 - 24,295,212	UniSTS
RH 3.4 Map	6	90.2	UniSTS
Cytogenetic Map	6	q13	UniSTS

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
738023	Alc17	Alcohol consumption QTL 17	3.1	0.003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	6	1	27574569	Rat
1354616	Despr12	Despair related QTL 12		0.0012	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	6	1	27574569	Rat
1549905	Stresp10	Stress response QTL 10	6.83	0.0066	stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	6	1	27574569	Rat
2300176	Bmd51	Bone mineral density QTL 51	11.7	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	6	1	27574569	Rat
2300190	Bmd52	Bone mineral density QTL 52	11.2	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	6	1	27574569	Rat
1331743	Uae28	Urinary albumin excretion QTL 28	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	1	34235784	Rat
1578758	Tcas9	Tongue tumor susceptibility QTL 9	3.29		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	6	1	37618905	Rat
1598843	Cm63	Cardiac mass QTL 63	2.6		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	6	1	39036266	Rat
7411603	Foco13	Food consumption QTL 13	5.5	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	6	1	41223769	Rat
8552962	Pigfal16	Plasma insulin-like growth factor 1 level QTL 16	9.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	6	1	41223769	Rat
7411542	Bw127	Body weight QTL 127	5.5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	1	41223769	Rat
9589129	Insul24	Insulin level QTL 24	19.06	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	6	1	41223769	Rat
9589048	Scfw3	Subcutaneous fat weight QTL 3	4.57	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	6	1	41223769	Rat
2293709	Bss23	Bone structure and strength QTL 23	5.18	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	6	1	42487980	Rat
2293650	Bss31	Bone structure and strength QTL 31	5.05	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	6	1	42487980	Rat
2293656	Bss28	Bone structure and strength QTL 28	6.79	0.0001	femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	6	1	42487980	Rat
7411584	Foco4	Food consumption QTL 4	4.3	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	6	1	42838846	Rat
738024	Sach5	Saccharine consumption QTL 5	3.9	0.00039	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	6	1	43394190	Rat
2301972	Bp325	Blood pressure QTL 325	4.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	6	1	72227641	Rat
1300128	Rf16	Renal function QTL 16	3.89		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	6	5074497	34434305	Rat
1300164	Rf15	Renal function QTL 15	3.12		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	6	5074497	54641141	Rat
4145119	Mcs25	Mammary carcinoma susceptibility QTL 25		0.0001	mammary gland integrity trait (VT:0010552)	ratio of deaths to total study population during a period of time (CMO:0001023)	6	10894415	110548006	Rat
1578665	Bss16	Bone structure and strength QTL 16	4.4		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	6	11735669	72593685	Rat
1578668	Bmd14	Bone mineral density QTL 14	3.8		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	6	11735669	72593685	Rat
10401812	Kidm54	Kidney mass QTL 54			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	6	14368788	59368788	Rat
10401800	Kidm49	Kidney mass QTL 49			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	6	14368788	59368788	Rat
1576309	Emca7	Estrogen-induced mammary cancer QTL 7	4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	15107216	107351382	Rat
1359023	Bp272	Blood pressure QTL 272	2.5		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	16536140	27261739	Rat
2292589	Emca10	Estrogen-induced mammary cancer QTL 10		0.048	mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	6	16536140	61536140	Rat
1354664	Slep2	Serum leptin concentration QTL 2	4.49		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	6	16536140	71636405	Rat
1641898	Colcr4	Colorectal carcinoma resistance QTL4	3.71	0.0007	intestine integrity trait (VT:0010554)	well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)	6	20338777	62613667	Rat
2293839	Kiddil2	Kidney dilation QTL 2	4.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	20866422	81133036	Rat
2293841	Kiddil4	Kidney dilation QTL 4	4.4		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	20866422	81133036	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	75
Count of miRNA genes:	61
Interacting mature miRNAs:	66
Transcripts:	ENSRNOT00000006452
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3		48	41		41				13	14	3
Low		43	9		19		8	11	74	22	27	8	8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108703	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239805	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239806	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764520	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764521	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112470	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112471	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112472	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112473	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005505536	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ209797	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000164	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000006452 ⟹ ENSRNOP00000006452

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	24,747,293 - 24,824,290 (+)	Ensembl
Rnor_6.0 Ensembl	6	26,051,396 - 26,128,906 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000098615 ⟹ ENSRNOP00000080640

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	24,747,730 - 24,824,290 (+)	Ensembl

RefSeq Acc Id:

NM_001108703 ⟹ NP_001102173

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	24,747,730 - 24,824,290 (+)	NCBI
Rnor_6.0	6	26,051,614 - 26,128,762 (+)	NCBI
Rnor_5.0	6	35,875,881 - 35,953,018 (+)	NCBI
RGSC_v3.4	6	24,792,303 - 24,868,759 (+)	RGD
Celera	6	24,241,936 - 24,318,495 (+)	RGD

Sequence:

show sequence

CAGCGTCCGGGTTGAGCAAGAGCGAGGATTAGTAATGGCGGCGTCAGGGGAGCCCGGGAGGCTC
TGGCAGGAGGAAGAGGCGGCAGCAGTGGTGGTGGTGGGTTCCTGCATGACCGACCTGGTCAGTC
TTACTTCTCGCTTGCCAAAAACTGGAGAAACTATCCATGGACACAAGTTTTTTATTGGCTTTGG
AGGAAAAGGTGCCAACCAGTGTGTCCAAGCTGCCCGACTGGGAGCAAAGGCAGCCATGGTCTGC
AAGGTTGGCAATGATTCTTTTGGCAATAATTACATAGAAAACTTAAAACAAAATCATATTTCTA
CAGAGTTTACATACCAGACCAGAGATGCAGCTACAGGAACAGCCTCCATAATTGTCAATAATGA
AGGCCAGAACATCATCGTCATAGTGGCTGGAGCAAATCTGCTCTTGAATACTGAAGACTTGAAG
AAGGCAGCCCATGTCATTAGCCGAGCCAAAGTGATGATCTGCCAGCTAGAAATAAGCCCGGCAG
CTTCTCTGGAAGCCCTGACAATGGCCCGCAGCAGTGGAGTGAAAACATTGTTCAACCCAGCTCC
GGCCATTGCTGACCTGGACCCCCGGTTCTACACCCTCTCCACTGTGTTCTGCTGCAACGAGAGT
GAGGCTGAGATCCTAACAGGCCACGCAGTGAATGACCCAACCACGGCTGGAACGGCTGCGCTGG
TTCTCCTAGAACGGGGCTGCCAGGTTGTGGTCATCACCCTAGGGGCTTCAGGATGTGTGACACT
GTCACAGGCAGAACCTGTTCCAAAGCACATTCCCACAGAAGCAGTCAAGGCTGTGGACACCACG
GGTGCTGGTGACAGTTTTGTGGGAGCGCTTGCCTTCTACCTGGCTTACTACCCAAGTCTGTCCT
TGGAAGAAATGCTCAAGAGATCTAATTCCATCGCTGCGGTCAGCGTCCAGGCCACAGGAACACA
GTCCTCTTATCCATACAAAAAAGACCTCCCTCTTGCTCTATTTTAACCACTGCTAACCCCCAAA
TAAACATAATCTTGAAATTAAATGGTCAT

hide sequence

RefSeq Acc Id:

XM_006239805 ⟹ XP_006239867

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	24,747,651 - 24,824,283 (+)	NCBI
Rnor_6.0	6	26,051,568 - 26,128,755 (+)	NCBI
Rnor_5.0	6	35,875,881 - 35,953,018 (+)	NCBI

Sequence:

show sequence

GACGGAGTGGCGTCCCTGGTTACGGGGTCAGGCAAAGGGCAAAGGGCAGCGTCCGGGTTGAGCA
AGAGCGAGGATTAGTAATGGCGGCGTCAGGGGAGCCCGGGAGGCTCTGGCAGGAGGAAGAGGCG
GCAGCAGTGGTGGTGGTGGGTTCCTGCATGACCGACCTGGTCAGTCTTACTTCTCGCTTGCCAA
AAACTGGAGAAACTATCCATGGACACAAGTTTTTTATTGGCTTTGGAGGAAAAGGTGCCAACCA
GTGTGTCCAAGCTGCCCGACTGGGAGCAAAGGCAGCCATGGTCTGCAAGGTTGGCAATGATTCT
TTTGGCAATAATTACATAGAAAACTTAAAACAAAATCATATTTCTACAGAGTTTACATACCAGA
CCAGAGATGCAGCTACAGGAACAGCCTCCATAATTGTCAATAATGAAGTGAAAACATTGTTCAA
CCCAGCTCCGGCCATTGCTGACCTGGACCCCCGGTTCTACACCCTCTCCACTGTGTTCTGCTGC
AACGAGAGTGAGGCTGAGATCCTAACAGGCCACGCAGTGAATGACCCAACCACGGCTGGAACGG
CTGCGCTGGTTCTCCTAGAACGGGGCTGCCAGGTTGTGGTCATCACCCTAGGGGCTTCAGGATG
TGTGACACTGTCACAGGCAGAACCTGTTCCAAAGCACATTCCCACAGAAGCAGTCAAGGCTGTG
GACACCACGGGTGCTGGTGACAGTTTTGTGGGAGCGCTTGCCTTCTACCTGGCTTACTACCCAA
GTCTGTCCTTGGAAGAAATGCTCAAGAGATCTAATTCCATCGCTGCGGTCAGCGTCCAGGCCAC
AGGAACACAGTCCTCTTATCCATACAAAAAAGACCTCCCTCTTGCTCTATTTTAACCACTGCTA
ACCCCCAAATAAACATAATCTTGAAATTAAA

hide sequence

RefSeq Acc Id:

XM_006239806 ⟹ XP_006239868

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	24,747,651 - 24,824,283 (+)	NCBI
Rnor_6.0	6	26,051,568 - 26,128,761 (+)	NCBI
Rnor_5.0	6	35,875,881 - 35,953,018 (+)	NCBI

Sequence:

show sequence

GACGGAGTGGCGTCCCTGGTTACGGGGTCAGGCAAAGGGCAAAGGGCAGCGTCCGGGTTGAGCA
AGAGCGAGGATTAGTAATGGCGGCGTCAGGGGAGCCCGGGAGGCTCTGGCAGGAGGAAGAGGCG
GCAGCAGTGGTGGTGGTGGGTTCCTGCATGACCGACCTGGTCAGTCTTACTTCTCGCTTGCCAA
AAACTGGAGAAACTATCCATGGACACAAGTTTTTTATTGGCTTTGGAGGAAAAGGTGCCAACCA
GTGTGTCCAAGCTGCCCGACTGGGAGCAAAGGCAGCCATGGTCTGCAAGGTTGGCAATGATTCT
TTTGGCAATAATTACATAGAAAACTTAAAACAAAATCATATTTCTACAGAGTTTACATACCAGA
CCAGAGATGCAGCTACAGGAACAGCCTCCATAATTGTCAATAATGAAGGCCAGAACATCATCGT
CATAGTGGCTGGAGCAAATCTGCTCTTGAATACTGAAGACTTGAAGAAGGCAGCCCATGTCATT
AGCCGAGCCAAAGTGATGATCTGCCAGCTAGAAATAAGCCCGGCAGCTTCTCTGGAAGCCCTGA
CAATGGCCCGCAGCAGTGGAGTGAAAACATTGTTCAACCCAGCTCCGGCCATTGCTGACCTGGA
CCCCCGGTTCTACACCCTCTCCACTGTGTTCTGCTGCAACGAGAGTGAGGGTGCTGGTGACAGT
TTTGTGGGAGCGCTTGCCTTCTACCTGGCTTACTACCCAAGTCTGTCCTTGGAAGAAATGCTCA
AGAGATCTAATTCCATCGCTGCGGTCAGCGTCCAGGCCACAGGAACACAGTCCTCTTATCCATA
CAAAAAAGACCTCCCTCTTGCTCTATTTTAACCACTGCTAACCCCCAAATAAACATAATCTTGA
AATTAAATGGTCA

hide sequence

RefSeq Acc Id:

XM_008764521 ⟹ XP_008762743

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	24,747,651 - 24,821,535 (+)	NCBI
Rnor_6.0	6	26,051,568 - 26,124,990 (+)	NCBI

Sequence:

show sequence

GACGGAGTGGCGTCCCTGGTTACGGGGTCAGGCAAAGGGCAAAGGGCAGCGTCCGGGTTGAGCA
AGAGCGAGGATTAGTAATGGCGGCGTCAGGGGAGCCCGGGAGGCTCTGGCAGGAGGAAGAGGCG
GCAGCAGTGGTGGTGGTGGGTTCCTGCATGACCGACCTGGTCAGTCTTACTTCTCGCTTGCCAA
AAACTGGAGAAACTATCCATGGACACAAGTTTTTTATTGGCTTTGGAGGAAAAGGTGCCAACCA
GTGTGTCCAAGCTGCCCGACTGGGAGCAAAGGCAGCCATGGTCTGCAAGGTTGGCAATGATTCT
TTTGGCAATAATTACATAGAAAACTTAAAACAAAATCATATTTCTACAGAGTTTACATACCAGA
CCAGAGATGCAGCTACAGGAACAGCCTCCATAATTGTCAATAATGAAGGCCAGAACATCATCGT
CATAGTGGCTGGAGCAAATCTGCTCTTGAATACTGAAGACTTGAAGAAGGCAGCCCATGTCATT
AGCCGAGCCAAAGTGATGATCTGCCAGCTAGAAATAAGCCCGGCAGCTTCTCTGGAAGCCCTGA
CAATGGCCCGCAGCAGTGGAGTGAAAACATTGTTCAACCCAGCTCCGGCCATTGCTGACCTGGA
CCCCCGGTTCTACACCCTCTCCACTGTGTTCTGCTGCAACGAGAGTGAGGCTGAGATCCTAACA
GGCCACGCAGTGAATGACCCAACCACGGCTGGAACGGCTGCGCTGGTTCTCCTAGAACGGGGCT
GCCAGGTTGTGGTCATCACCCTAGGGGCTTCAGGATGTGTGACACTGTCACAGGCAGAACCTGT
TCCAAAGCACATTCCCACAGAAGCAGTCAAGGCTGTGGACACCACGCCCCTGGCCAAATCCTGG
AAAAAGAAATGGTGTGTCATCATGTTTCAGCCATTTGCTGCTCTCTGGCCTCTGAAACCACAAG
CAGACTGAGGAATCCGGCCTTCAGTGTGGGCTCTGAATAGCTCTACGGAGGGAGAGGCCCTGAA
CAGAAAAGAAAGTGGTATCACTTGTTAGACGGAATGTATGAAGACGTCCAGGAGGAATGTGGGG
CTCCGTTCAGTGGCCCAGCTTTGGCCTTTGAATCATGCCGTGTGGCTCCAGATGCCTAACAGAT
GAAGCCTCGGGACTGACATCACTCTCGCATGATCACCCGGGTCTGCTGTGCCGCCCAGCAAGTT
TTTTACCTTGGGGATTTTCAGCACTTGGGAATTTTCCCAACCACATTTAATATCTGTCATTCCT
TCCAACTCACCCATTTTCTGTCATCTGGAATTTGACAAACTAGGACTCTTATAAGCCTATTTCA
TTGCTGGTGCCCCCTCCTGTAAGATGAGGTGTCCTTGGGACACCGTGTGCTCTCTTGCCCGACC
TCATAAGCCCATCTTCCTGTCAGTGCTGGCTTCTATCAGGGCATTTCCGCAGAGGTGGGCACAG
CACTAGGCCTCAGGATCAAAGGTGACAAAATTGCCCCCATGTCCTCAGAGAGGAGGCACAGAGG
ACACAAGGGTAAGTGGTCTAGGTTGACAGGATCAGAGAAGCTTTGAGCTGAGTGTCAGGCAGTC
AGTGTGACTGACCACACGATATCTGAGTTGAGTCTTAGGATTAAAGGAAGAAAGGAGCTAGTCT
GTGCAAAGTCTAAGCTAAAGTGTCTCCAGGAACAAAGACTCAAATGGTAAAGAGGAAGCAATGA
GAGGTAAAACTAGAAAATAAGTTTATGCCAGATGTGATGGCTACACTTTAACCCCAGCACTTGG
GACACAGAAGCAGGCAGATCTCTGAGTTAAAGACCAACCTGGTCTGTATAATGAGTTCCGGTGA
GACTCTGTCTCATAAAAAATTTTTAAGTATTTTATGTGCTACGTTTAAGGAGTTAACGTATTAT
CCTCAGAAGGAGGAGGAACATGGCGAGTGTTTTAGGCATAGAGATGAGACAACCAGATGTGTGT
GGAAAACAGACTGGAAGGGTCTGACCTGGAAGCAGGGAGAACAGTTAAGTCTCTGTAGACCTCT
AGAGAGGGTGTGGACATAACACAGGACCACAGGAAGGGATGGAGAGAGACAATGGCGATTCTGG
GTGCAGGGTTTAGGACGTGCAGTATTCAACACAGCTTAAACTGTGTTAGTAATTAAAACACCCA
GGAAATGGGAATGAGAACCACAGGGAGCCAGGATCATAGACCCAAAGGAAACCAGTATTGAAGG
TGCAAGAGGAGACAGGACCTGTCAGGAAGACAAGCAGAGGAGGCTCAGGAACCACGAAAGACCC
AGTCTCTTCCTTCTCCACACCACTGTCCTGCTCAGTGCTTAACTCTCTGCTCTTCTGGAACCTG
GTCATCTACAACTTCAGCATCTGCATTACCATTTTTCCTCCATCCTGGTGCAACTGTCATGTGG
CATCAAACATCGCCTTTGGAGCATGAGAATGAGCCATTTCCAAGACCCTCAGCTCTGGTGACCC
TTGACGTCTGTTCCAGTTCAACCTCTCACTCCCATGACGACAGTACCTGCTTGAAAACCCCCAG
TCCTGCTCTGGCCTTGGCCAGTTTTCTCTTCTTTTCTCCCCCATTCTTATCTTCCTCAGTTACC
TGCATTTTCTCCTGTCCTGTTGAGCCCCTCCTGATTGTTCTTCCTCCCTCAGCCCATAAGTCTC
TGATCATCCTTCTCAGCTATCATTCCCTGAAAACATGGATTCCTCTGTAAGTCCCTTCTTCCTT
CCCACCTGCCCAATCTAGTTCAAACTCTCTGCTCTTGCCCCAAGCACTGGGGAAACGGTACCTG
TTGTGATTTGAATCTGATATGTCCCCAGCTGGTGGCACTACTGTAGAAGGCTGGGGACCTGGAG
GACATACAGCCAGGCCAGCAGAAGTGAGTTGCTATGTCAAGTCAACTCTGTGCTTTCTGGGCCA
CTATGATGAGGGGTAGCTGCCACATGCTCCCACCATGAAATGCTTTTCCCTCCGGTACAGACCC
TCACCCTGGCACTGGAATCATGAGACAAAATAACCCTCTCCTCCTCTGAGCTGTTTCTGCCCAG
TTCTTTGGTCACAGTGATGCAAAAGTAGTCAACACAGTACCCCACGCAAGACGTCGAGAGATTC
ATGATCTTCCCACAAGGCAGCCAAGGACGCCTCTCCATCTGCACTTGCTAAAACCATCCCCTGG
AGGAGACAGAGCAAGGTCTGCACTTTCCCATGAGACCTCAACTGCAACACTTGAGCCACTGTGG
TGCAGAATCACATGCAGGTGTAAGTCACAGCCTAGCACATTGAGGTCATAAAGAGGTGGCAGTC
GTGTGCAACATGCTGTGTCACTGGAGTCCCACACAGACACCTCGCTGCAAACCACGACTGTGAG
CGCTGCCTTTTCTTTAAATGTCCATGAGCTGTTTACATGCCTTGAACCAAGAATAAGTTTCCTC
AGCTTTAACCTGAGGATAGCACAGGGTTGCTGCTGACCTCCATGACACTTGGTGAAAATCACAA
GCGCCTCTCTGCATGGACTCACAGCTCTCTGTGACTCACCCCTAACAGGCACTCCGGTGCAATG
CAAGTTGCACAGTTTGAACTGTGCCTTCCTCCAGGGGGTCCTCGTGAACATCCAAACAGTAACG
TCCAGTAAGAGGAGGCCCAGAAGAGCCTGACTGAGCAGAACTTCGGGGGGGGAAACAGCTACTG
CGGACAGCCGGCCTAAGAATCAAGCGAGGATGCCGCGCTGGGGCAACCTTCTACTACTTTTAAG
CGTTTCTTCCTCAGCTCTCCTCTCTTGCCAGACAGCCCTAAGAGAGTGGGTCTGAACTGGCTCA
GTTCAGTGAGGGCACAGAACTATGATCCTAGACCATGGAAAGAGGTCCATGATCCTAGCCCCAG
GAAGGCAAGGAACGGGAGGGAACAGAAAGTGAGGTGTTGGCCAGAGGAGATGGTCTGAAACGAT
GGAGGGAAACGAGAGCAAACTCCACAGAGCAACACTGCCTCAGGCCAGCAGCAGAGGCCTCCCC
ACAATCCAGCTTGGCCCTGTCCTTTAAAATTCTCCCCTCTCAGGTGCTGACCTTGAGGTCGTCT
GAGCAGCTTTGCCAGCGCCCTCCCCATACCACCAGCCCTCAAAACCCACACCACTGGCCTGTGT
GCATCTCTGCTGCAGTGACTGGTAACCACGATGACCAAAAGCATCTTAGGGAGGAAAGGGTTTT
TGTTTGGCTTACAGGTTACAGCTGGGCATCCGAGGAACTCGATACAGGAATCTAGAGGCAGGAG
TTGAAGTAGAGGCAATGACAGAATGTTGCTTACTGGTTCTCTTTCCATGGCTTGTTCAGGGTGG
CAGTGCCCACAGTAGGCTCAGACCTCCCACTTCAGTCACTAATGAAAAGAAAAAGACAGCCCCC
CCCCCCGCAACCTCGTTATGCAGCCCTGGACTTTCTTGCTGTCCTTCTCACCCTGACACAAGAG
CTGCCTCCACACACACTGTGGGTCAGAATGTCTCAGAACCCAGGACATGGGGGCTCTTGGGAAA
GCAGGGAGTGTGGAATCCCACGTGCACTATGGGTGAGCAGCTAGCTGGTCCTCAGGAGGGAAAT
GTTCTGAGAAGGCAACAAGTACTAGCCACGTGGGTGACTGTCGGAAGGAGGGTAAGTTAGGCCA
TCACCCCTTCTGGCATAAAAATAATGTTCATTAAAAGGTTAAAACTATCAAGTTCTATCAATGA
GATATATTCCATTATACCAAGAATGATTGATTGGAAAGTACTTTACTTACAGGAAAATCACAGT
GATAGAATACAGCCTCCACTTTTAAAGTACTTTCCATTAAAAAAAAAAAAACCAATGTATAAAA
ATAGTTATACTAAAAATGTGAATCAACAGCCAAGTAATTTATTGGCACTTGAAAGCCTCCTGGT
ATAAATAGAGCCAACAATGGGAATATCACATAACTCTGAGCCGTGGCAACCTGACCTAACACAA
AAGAAAGCCACGCAGTTCACCCAGGGCCAGCCAGCCCCCTTGGAAGAGATTCTGCGCAGAGAAC
ATGACGGAGCTGGAACCATTAGGTCAACATCAGGTGGGGCAGGCAAGACACAGTGGGCACAGAT
GTAGACTCCACCCGAGAGTTTACAAGTTGTCCTGACTGTAGGCCTCTGCCTAAAATACACAGCA
TGGTGTATGCAGGGTCCTAAGGAAAGCACGGAGTTCCCCCAATACTACAGAAAATAGAGATGCT
TAAACTCTGGGATGTTTCTTTCTACCCTCCCTGCCCACAGACAGGTAGAGGCAATCTGACCTCT
CTGCAGTGTTTAACCAGGGGGCGGGGTCTGCCTCAGGCAGTGTGTCCTTGGTTAAAAACCAGGT
AAAGCAGCCATGTCCTGCCATGGTCCCATATCCAGCTGTGCTGCTAGCATCTGGAGCCATTAAG
TGTCCCTCCCAGTCCCCTCAACTTTCAGGTGCCTGGCCTGGGTTGGAAGAAACTGCCACAGTGA
GCTTGAGTATCCACCGATGCAGGCAGGAGCTTCTCTGGATTCATTCCACACTGACTCAGTGGAG
AGCCACAAATCTGTTTGTTTGTTTGTTTGTTTGGTTTGGTTTTTTTTTCACAAATCATTTTAAA
AAAGAGAGAAATCATTCAGAAGCAAATATTGTCACAATTGCAAATTCACGAAAGATGACTTGTA
AAATTCTTTAAGTCATTTTTATTTTATAAAGAAAACTTGGAAATTGCACCTCTGCCCTACTACT
CTTCACTCACCTGTCATTAACATGTTGTCGCATCTGGCTCATTGCTGTTGCTTGTGCACATGCA
TACTGCATGCCTGTGTGTGGTGGGGAGAGGTGTGGGGGCGGGGAGAAGAGGTCCTTCCAGAAAG
TGTCCTGCTCTGTCTGTCACTGTCCACCTGGGACAGTGTCTTCCTGAAGGGGAGGCAGCAAGCC
CAGTGGTCCTCCCGACTCTGCCGCTCACCCACGGCACTGCTGTCACAGGTACGCAGTCACTGCG
AGCTTTCTATCTGTGCTCTGGAACTCTGAGCTCAGGTCCTCGTGTCTGAATAGCAAGTGCTTAC
AGCTGTTATCTTTCTAGCCCGAATATGTTTATTTTTAGGTAACAATTTGAGAATAAGTTGCTGG
CCCTATGAGTTACTGTATAGTCGAGGATGGTCTTGAACTTGTGATTCTCCTGCCTCCATTTCTA
GGTGCTGGGATTACAGGCCTGTGCCACCACATCCAGCTTAGGCAGCGACAGGGATCAAGCCCAG
GGTTTCATGCATACTTCACAAGCACTGGACCAACTGAACACCATTCTTAGCCTAAGAAATTTGA
TTTCTTATTGTTCATTGCTACTACACAGAAATGCACTCATTTTCAACTGACAAGATGTCCTGTA
ATCTTGTTAAATCTGCTTTTTCTAGTAGGAACTTGTTTTCCTTAGGACTTATACATCAGTCATT
ACACCATCTTCACTAAACTTCCCTTCTTTCCAGTCTGCATACCTGCTCGTTTTCCTGCCTTTCC
ACACTGGCTGTGAAATGCAGAACAAAACTAACCAAAGGGACAGCAGACCACCCAGGCCAAGACC
CAGACAGAGGGGGAAAACATAGCTCTTCCTCAAGTGTGAGGCACATAGAGATCTGCTCAGAAAT
GTCCCTTCAGGTGGCTAAGCCATACTTTCTACACTCCTCCTGATACAAAGTTTTTAAAAGCATT
TATATTGGTTTTAAAAGTAAGTGTCTTATAGTGATATATTCACTCCTTGGACAGCTTCTGCTTG
GTCATGGCACATGTGTGTGTTTATATATTTATATTCTACTGGCTTAAAAATTATTTTGCGGGG

hide sequence

RefSeq Acc Id:

XM_039112470 ⟹ XP_038968398

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	24,747,761 - 24,824,287 (+)	NCBI

RefSeq Acc Id:

XM_039112471 ⟹ XP_038968399

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	24,747,651 - 24,824,283 (+)	NCBI

RefSeq Acc Id:

XM_039112472 ⟹ XP_038968400

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	24,770,532 - 24,824,287 (+)	NCBI

RefSeq Acc Id:

XM_039112473 ⟹ XP_038968401

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	24,747,766 - 24,824,287 (+)	NCBI

RefSeq Acc Id:

XR_005505536

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	24,747,651 - 24,792,546 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102173	(Get FASTA)	NCBI Sequence Viewer
	XP_006239867	(Get FASTA)	NCBI Sequence Viewer
	XP_006239868	(Get FASTA)	NCBI Sequence Viewer
	XP_008762743	(Get FASTA)	NCBI Sequence Viewer
	XP_038968398	(Get FASTA)	NCBI Sequence Viewer
	XP_038968399	(Get FASTA)	NCBI Sequence Viewer
	XP_038968400	(Get FASTA)	NCBI Sequence Viewer
	XP_038968401	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM02893	(Get FASTA)	NCBI Sequence Viewer
	EDM02894	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001102173 ⟸ NM_001108703

- UniProtKB:

D3ZVU4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAASGEPGRLWQEEEAAAVVVVGSCMTDLVSLTSRLPKTGETIHGHKFFIGFGGKGANQCVQAA
RLGAKAAMVCKVGNDSFGNNYIENLKQNHISTEFTYQTRDAATGTASIIVNNEGQNIIVIVAGA
NLLLNTEDLKKAAHVISRAKVMICQLEISPAASLEALTMARSSGVKTLFNPAPAIADLDPRFYT
LSTVFCCNESEAEILTGHAVNDPTTAGTAALVLLERGCQVVVITLGASGCVTLSQAEPVPKHIP
TEAVKAVDTTGAGDSFVGALAFYLAYYPSLSLEEMLKRSNSIAAVSVQATGTQSSYPYKKDLPL
ALF

hide sequence

RefSeq Acc Id:

XP_006239868 ⟸ XM_006239806

- Peptide Label:

isoform X4

- Sequence:

show sequence

MAASGEPGRLWQEEEAAAVVVVGSCMTDLVSLTSRLPKTGETIHGHKFFIGFGGKGANQCVQAA
RLGAKAAMVCKVGNDSFGNNYIENLKQNHISTEFTYQTRDAATGTASIIVNNEGQNIIVIVAGA
NLLLNTEDLKKAAHVISRAKVMICQLEISPAASLEALTMARSSGVKTLFNPAPAIADLDPRFYT
LSTVFCCNESEGAGDSFVGALAFYLAYYPSLSLEEMLKRSNSIAAVSVQATGTQSSYPYKKDLP
LALF

hide sequence

RefSeq Acc Id:

XP_006239867 ⟸ XM_006239805

- Peptide Label:

isoform X3

- Sequence:

show sequence

MAASGEPGRLWQEEEAAAVVVVGSCMTDLVSLTSRLPKTGETIHGHKFFIGFGGKGANQCVQAA
RLGAKAAMVCKVGNDSFGNNYIENLKQNHISTEFTYQTRDAATGTASIIVNNEVKTLFNPAPAI
ADLDPRFYTLSTVFCCNESEAEILTGHAVNDPTTAGTAALVLLERGCQVVVITLGASGCVTLSQ
AEPVPKHIPTEAVKAVDTTGAGDSFVGALAFYLAYYPSLSLEEMLKRSNSIAAVSVQATGTQSS
YPYKKDLPLALF

hide sequence

RefSeq Acc Id:

XP_008762743 ⟸ XM_008764521

- Peptide Label:

isoform X2

- Sequence:

show sequence

MAASGEPGRLWQEEEAAAVVVVGSCMTDLVSLTSRLPKTGETIHGHKFFIGFGGKGANQCVQAA
RLGAKAAMVCKVGNDSFGNNYIENLKQNHISTEFTYQTRDAATGTASIIVNNEGQNIIVIVAGA
NLLLNTEDLKKAAHVISRAKVMICQLEISPAASLEALTMARSSGVKTLFNPAPAIADLDPRFYT
LSTVFCCNESEAEILTGHAVNDPTTAGTAALVLLERGCQVVVITLGASGCVTLSQAEPVPKHIP
TEAVKAVDTTPLAKSWKKKWCVIMFQPFAALWPLKPQAD

hide sequence

RefSeq Acc Id:

ENSRNOP00000006452 ⟸ ENSRNOT00000006452

RefSeq Acc Id:	XP_038968399 ⟸ XM_039112471
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038968398 ⟸ XM_039112470
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038968401 ⟸ XM_039112473
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038968400 ⟸ XM_039112472
- Peptide Label:	isoform X6

RefSeq Acc Id:

ENSRNOP00000080640 ⟸ ENSRNOT00000098615

Protein Domains

PfkB

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694429

Promoter ID:

EPDNEW_R4954

Type:

multiple initiation site

Name:

Rbks_1

Description:

ribokinase

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	26,051,631 - 26,051,691	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (2019)

Visual

CSV

TAB

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/EurMcwi (MCW)

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CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (2020)

Visual

CSV

TAB

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/N (MCW)

Visual

CSV

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN-Lx/CubMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BUF/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH2/CubMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH3/CubMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

DA/OlaHsd (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/DuCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

F344/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FXLE16/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE18/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/FarMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

HXB10/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB2/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB20/IpcvMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB31/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB4/IpcvMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEXF10A/StmMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF11/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1A/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1C/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF2B/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF3/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF4/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

M520/NRrrcMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MWF/Hsd (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

PVG/Seac (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/OlalpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/A3NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/RijCrl (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310064	AgrOrtholog
Ensembl Genes	ENSRNOG00000004710	Ensembl, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000006452	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000006452	UniProtKB/TrEMBL
Gene3D-CATH	3.40.1190.20	UniProtKB/TrEMBL
InterPro	Carb/pur_kinase	UniProtKB/TrEMBL
	Carboh/pur_kinase_PfkB_CS	UniProtKB/TrEMBL
	D_ribokin_bac	UniProtKB/TrEMBL
	Ribokinase	UniProtKB/TrEMBL
	Ribokinase-like	UniProtKB/TrEMBL
KEGG Report	rno:362706	UniProtKB/TrEMBL
NCBI Gene	362706	ENTREZGENE
Pfam	PfkB	UniProtKB/TrEMBL
PhenoGen	Rbks	PhenoGen
PRINTS	RIBOKINASE	UniProtKB/TrEMBL
PROSITE	PFKB_KINASES_2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF53613	UniProtKB/TrEMBL
TIGRFAMs	D_ribokin_bact	UniProtKB/TrEMBL
UniProt	D3ZVU4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Rbks	ribokinase	Rbks_predicted	ribokinase (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Rbks_predicted	ribokinase (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)

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Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)