Rbks (ribokinase) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Rbks (ribokinase) Rattus norvegicus
Analyze
Symbol: Rbks
Name: ribokinase
RGD ID: 1310064
Description: Predicted to enable identical protein binding activity and ribokinase activity. Predicted to be involved in pentose-phosphate shunt. Predicted to be located in nucleus. Predicted to be active in cytosol. Orthologous to human RBKS (ribokinase); PARTICIPATES IN pentose phosphate pathway; ribose 5-phosphate isomerase deficiency pathway; transaldolase deficiency pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; all-trans-retinoic acid.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC362706
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8630,467,724 - 30,544,284 (+)NCBIGRCr8
mRatBN7.2624,747,651 - 24,824,290 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl624,747,293 - 24,824,290 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx625,048,577 - 25,125,142 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0625,364,468 - 25,441,033 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0624,843,632 - 24,921,451 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0626,051,568 - 26,128,762 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl626,051,396 - 26,128,906 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0635,875,881 - 35,953,018 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4624,792,303 - 24,868,759 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1624,795,240 - 24,871,665 (+)NCBI
Celera624,241,936 - 24,318,495 (+)NCBICelera
Cytogenetic Map6q14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IBA)
nucleus  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:23376485   PMID:31515488  


Genomics

Comparative Map Data
Rbks
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8630,467,724 - 30,544,284 (+)NCBIGRCr8
mRatBN7.2624,747,651 - 24,824,290 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl624,747,293 - 24,824,290 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx625,048,577 - 25,125,142 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0625,364,468 - 25,441,033 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0624,843,632 - 24,921,451 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0626,051,568 - 26,128,762 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl626,051,396 - 26,128,906 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0635,875,881 - 35,953,018 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4624,792,303 - 24,868,759 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1624,795,240 - 24,871,665 (+)NCBI
Celera624,241,936 - 24,318,495 (+)NCBICelera
Cytogenetic Map6q14NCBI
RBKS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38227,781,379 - 27,890,387 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl227,781,379 - 27,890,681 (-)EnsemblGRCh38hg38GRCh38
GRCh37228,004,246 - 28,113,254 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36227,857,770 - 27,966,727 (-)NCBINCBI36Build 36hg18NCBI36
Build 34227,915,916 - 28,024,874NCBI
Celera227,849,543 - 27,958,241 (-)NCBICelera
Cytogenetic Map2p23.2NCBI
HuRef227,745,204 - 27,854,048 (-)NCBIHuRef
CHM1_1227,934,998 - 28,043,856 (-)NCBICHM1_1
T2T-CHM13v2.0227,824,533 - 27,933,507 (-)NCBIT2T-CHM13v2.0
Rbks
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39531,781,783 - 31,855,042 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl531,781,783 - 31,854,971 (-)EnsemblGRCm39 Ensembl
GRCm38531,624,439 - 31,697,649 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl531,624,439 - 31,697,627 (-)EnsemblGRCm38mm10GRCm38
MGSCv37531,926,812 - 31,999,983 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36531,901,020 - 31,974,191 (-)NCBIMGSCv36mm8
Celera529,103,150 - 29,176,281 (-)NCBICelera
Cytogenetic Map5B1NCBI
cM Map517.27NCBI
Rbks
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554699,734,563 - 9,831,127 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554699,734,551 - 9,831,397 (-)NCBIChiLan1.0ChiLan1.0
RBKS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21298,627,238 - 98,734,991 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A98,631,203 - 98,738,953 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A27,779,074 - 27,886,586 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A27,863,731 - 27,970,950 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A27,863,731 - 27,970,949 (-)Ensemblpanpan1.1panPan2
RBKS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11721,793,882 - 21,944,839 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1721,795,203 - 21,944,805 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1721,588,063 - 21,680,924 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01722,353,775 - 22,447,857 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1722,354,941 - 22,447,131 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11721,656,410 - 21,749,513 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01721,707,306 - 21,800,766 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01721,822,225 - 21,915,075 (-)NCBIUU_Cfam_GSD_1.0
Rbks
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629265,984,917 - 66,071,164 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364934,768,528 - 4,853,273 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364934,768,444 - 4,853,273 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBKS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3111,328,750 - 111,426,908 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13111,328,758 - 111,426,173 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23118,274,481 - 118,334,590 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RBKS
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11479,733,144 - 79,847,074 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1479,732,967 - 79,846,943 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604532,303,665 - 32,412,843 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rbks
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247389,806,933 - 9,910,684 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247389,795,381 - 9,911,276 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rbks
410 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:75
Count of miRNA genes:61
Interacting mature miRNAs:66
Transcripts:ENSRNOT00000006452
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738023Alc17Alcohol consumption QTL 173.10.003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)6127574569Rat
1354616Despr12Despair related QTL 120.0012locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)6127574569Rat
1549905Stresp10Stress response QTL 106.830.0066stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)6127574569Rat
2300176Bmd51Bone mineral density QTL 5111.70.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)6127574569Rat
2300190Bmd52Bone mineral density QTL 5211.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)6127574569Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)6134235784Rat
1578758Tcas9Tongue tumor susceptibility QTL 93.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)6137618905Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6139036266Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6141223769Rat
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6141223769Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6141223769Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6141223769Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6141223769Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6142487980Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6142487980Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6142487980Rat
7411584Foco4Food consumption QTL 44.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6142838846Rat
738024Sach5Saccharine consumption QTL 53.90.00039consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)6143394190Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
1300128Rf16Renal function QTL 163.89renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449734434305Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61173566972593685Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
1359023Bp272Blood pressure QTL 2722.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)61653614027261739Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)61653614071636405Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)62033877762613667Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat

Markers in Region
AI233177  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2624,792,724 - 24,792,929 (+)MAPPERmRatBN7.2
Rnor_6.0626,096,744 - 26,096,948NCBIRnor6.0
Rnor_5.0635,921,057 - 35,921,261UniSTSRnor5.0
RGSC_v3.4624,837,298 - 24,837,502UniSTSRGSC3.4
Celera624,286,932 - 24,287,136UniSTS
Cytogenetic Map6q13UniSTS
BE097107  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2624,800,805 - 24,801,005 (+)MAPPERmRatBN7.2
Rnor_6.0626,104,824 - 26,105,023NCBIRnor6.0
Rnor_5.0635,929,137 - 35,929,336UniSTSRnor5.0
RGSC_v3.4624,845,379 - 24,845,578UniSTSRGSC3.4
Celera624,295,013 - 24,295,212UniSTS
RH 3.4 Map690.2UniSTS
Cytogenetic Map6q13UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 48 41 41 13 14 3
Low 43 9 19 8 11 74 22 27 8 8
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000006452   ⟹   ENSRNOP00000006452
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl624,747,293 - 24,824,290 (+)Ensembl
Rnor_6.0 Ensembl626,051,396 - 26,128,906 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000098615   ⟹   ENSRNOP00000080640
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl624,747,730 - 24,824,290 (+)Ensembl
RefSeq Acc Id: NM_001108703   ⟹   NP_001102173
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8630,467,726 - 30,544,284 (+)NCBI
mRatBN7.2624,747,730 - 24,824,290 (+)NCBI
Rnor_6.0626,051,614 - 26,128,762 (+)NCBI
Rnor_5.0635,875,881 - 35,953,018 (+)NCBI
RGSC_v3.4624,792,303 - 24,868,759 (+)RGD
Celera624,241,936 - 24,318,495 (+)RGD
Sequence:
RefSeq Acc Id: XM_006239805   ⟹   XP_006239867
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8630,467,724 - 30,544,277 (+)NCBI
mRatBN7.2624,747,651 - 24,824,283 (+)NCBI
Rnor_6.0626,051,568 - 26,128,755 (+)NCBI
Rnor_5.0635,875,881 - 35,953,018 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006239806   ⟹   XP_006239868
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8630,467,724 - 30,544,277 (+)NCBI
mRatBN7.2624,747,651 - 24,824,283 (+)NCBI
Rnor_6.0626,051,568 - 26,128,761 (+)NCBI
Rnor_5.0635,875,881 - 35,953,018 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008764521   ⟹   XP_008762743
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8630,467,724 - 30,543,207 (+)NCBI
mRatBN7.2624,747,651 - 24,821,535 (+)NCBI
Rnor_6.0626,051,568 - 26,124,990 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039112470   ⟹   XP_038968398
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8630,467,741 - 30,544,277 (+)NCBI
mRatBN7.2624,747,761 - 24,824,287 (+)NCBI
RefSeq Acc Id: XM_039112471   ⟹   XP_038968399
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8630,467,724 - 30,544,277 (+)NCBI
mRatBN7.2624,747,651 - 24,824,283 (+)NCBI
RefSeq Acc Id: XM_039112472   ⟹   XP_038968400
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8630,490,528 - 30,544,277 (+)NCBI
mRatBN7.2624,770,532 - 24,824,287 (+)NCBI
RefSeq Acc Id: XM_039112473   ⟹   XP_038968401
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8630,467,766 - 30,544,277 (+)NCBI
mRatBN7.2624,747,766 - 24,824,287 (+)NCBI
RefSeq Acc Id: XM_063262051   ⟹   XP_063118121
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8630,467,724 - 30,513,038 (+)NCBI
RefSeq Acc Id: XM_063262052   ⟹   XP_063118122
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8630,467,724 - 30,513,038 (+)NCBI
RefSeq Acc Id: XR_005505536
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8630,467,724 - 30,512,542 (+)NCBI
mRatBN7.2624,747,651 - 24,792,546 (+)NCBI
RefSeq Acc Id: NP_001102173   ⟸   NM_001108703
- UniProtKB: A0A8I6G4T5 (UniProtKB/TrEMBL),   A6HA35 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006239868   ⟸   XM_006239806
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006239867   ⟸   XM_006239805
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_008762743   ⟸   XM_008764521
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000006452   ⟸   ENSRNOT00000006452
RefSeq Acc Id: XP_038968399   ⟸   XM_039112471
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038968398   ⟸   XM_039112470
- Peptide Label: isoform X7
- UniProtKB: D3ZVU4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968401   ⟸   XM_039112473
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038968400   ⟸   XM_039112472
- Peptide Label: isoform X6
RefSeq Acc Id: ENSRNOP00000080640   ⟸   ENSRNOT00000098615
RefSeq Acc Id: XP_063118121   ⟸   XM_063262051
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063118122   ⟸   XM_063262052
- Peptide Label: isoform X8
Protein Domains
Carbohydrate kinase PfkB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZVU4-F1-model_v2 AlphaFold D3ZVU4 1-323 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694429
Promoter ID:EPDNEW_R4954
Type:multiple initiation site
Name:Rbks_1
Description:ribokinase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0626,051,631 - 26,051,691EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310064 AgrOrtholog
BioCyc Gene G2FUF-38370 BioCyc
Ensembl Genes ENSRNOG00000004710 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000006452.7 UniProtKB/TrEMBL
  ENSRNOT00000098615 ENTREZGENE
  ENSRNOT00000098615.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.1190.20 UniProtKB/TrEMBL
InterPro Carb/pur_kinase UniProtKB/TrEMBL
  Carboh/pur_kinase_PfkB_CS UniProtKB/TrEMBL
  D_ribokin_bac UniProtKB/TrEMBL
  Ribokinase UniProtKB/TrEMBL
  Ribokinase-like UniProtKB/TrEMBL
KEGG Report rno:362706 UniProtKB/TrEMBL
NCBI Gene 362706 ENTREZGENE
PANTHER RIBOKINASE UniProtKB/TrEMBL
  SUGAR KINASE UniProtKB/TrEMBL
Pfam PfkB UniProtKB/TrEMBL
PhenoGen Rbks PhenoGen
PRINTS RIBOKINASE UniProtKB/TrEMBL
PROSITE PFKB_KINASES_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000004710 RatGTEx
Superfamily-SCOP SSF53613 UniProtKB/TrEMBL
UniProt A0A8I6G4T5 ENTREZGENE, UniProtKB/TrEMBL
  A6HA35 ENTREZGENE, UniProtKB/TrEMBL
  D3ZVU4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Rbks  ribokinase   Rbks_predicted  ribokinase (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Rbks_predicted  ribokinase (predicted)      Symbol and Name status set to approved 70820 APPROVED