Foxn2 (forkhead box N2) - Rat Genome Database

Name: Foxn2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Foxn2 (forkhead box N2) Rattus norvegicus

Analyze

Symbol:

Foxn2

Name:

forkhead box N2

RGD ID:

1562291

Description:

Predicted to have sequence-specific double-stranded DNA binding activity. Predicted to be involved in skeletal muscle cell differentiation. Predicted to localize to nucleoplasm. Orthologous to human FOXN2 (forkhead box N2); INTERACTS WITH 6-propyl-2-thiouracil; 1,2-dichloroethane (ortholog); 1,2-dimethylhydrazine (ortholog).

Type:

protein-coding

RefSeq Status:

MODEL

Also known as:

forkhead box protein N2; LOC301676; RGD1562291; similar to Human T-cell leukemia virus enhancer factor (Forkhead box protein N2)

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	FOXN2 (forkhead box N2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Foxn2 (forkhead box N2)	HGNC	EggNOG, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Foxn2 (forkhead box N2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	FOXN2 (forkhead box N2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	FOXN2 (forkhead box N2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Foxn2 (forkhead box N2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	FOXN2 (forkhead box N2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	FOXN2 (forkhead box N2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Foxn2 (forkhead box N2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	FOXN2 (forkhead box N2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Mus musculus (house mouse):	Foxn2 (forkhead box N2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Danio rerio (zebrafish):	foxn2a (forkhead box N2a)	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	6	6,018,653 - 6,065,216 (-)	NCBI
Rnor_6.0 Ensembl	6	12,179,227 - 12,205,446 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	6	12,158,127 - 12,205,450 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	6	22,124,363 - 22,170,775 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	12,267,384 - 12,278,896 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	6	5,788,949 - 5,835,379 (-)	NCBI		Celera
Cytogenetic Map	6	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-hydroxypropanoic acid (ISO)

2-methylcholine (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

6-propyl-2-thiouracil (EXP)

benzo[a]pyrene (ISO)

bisphenol A (ISO)

bisphenol F (ISO)

carbon nanotube (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

doxorubicin (ISO)

indometacin (ISO)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (ISO)

propiconazole (ISO)

rac-lactic acid (ISO)

sunitinib (ISO)

tetrachloromethane (ISO)

troglitazone (ISO)

valproic acid (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of transcription, DNA-templated (IBA)

skeletal muscle cell differentiation (ISO)

Cellular Component

intracellular membrane-bounded organelle (ISO)

nucleoplasm (IEA,ISO)

nucleus (IBA)

Molecular Function

cis-regulatory region sequence-specific DNA binding (IBA)

DNA-binding transcription factor activity (IBA)

protein binding (ISO)

sequence-specific double-stranded DNA binding (ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	RGD automated data pipeline
3.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:22147266

Genomics

Comparative Map Data

Foxn2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	6	6,018,653 - 6,065,216 (-)	NCBI
Rnor_6.0 Ensembl	6	12,179,227 - 12,205,446 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	6	12,158,127 - 12,205,450 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	6	22,124,363 - 22,170,775 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	12,267,384 - 12,278,896 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	6	5,788,949 - 5,835,379 (-)	NCBI		Celera
Cytogenetic Map	6	q12	NCBI

FOXN2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	2	48,314,637 - 48,379,295 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	2	48,314,299 - 48,379,295 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	2	48,541,438 - 48,606,434 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	48,395,299 - 48,459,938 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	2	48,453,520 - 48,518,085	NCBI
Celera	2	48,381,574 - 48,446,198 (+)	NCBI
Cytogenetic Map	2	p16.3	NCBI
HuRef	2	48,277,701 - 48,342,337 (+)	NCBI		HuRef
CHM1_1	2	48,471,985 - 48,536,626 (+)	NCBI		CHM1_1

Foxn2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	88,746,430 - 88,797,961 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	17	88,748,139 - 88,797,961 (+)	Ensembl
GRCm38	17	88,440,704 - 88,490,533 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	88,440,711 - 88,490,533 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	88,840,052 - 88,889,873 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	17	88,349,084 - 88,386,397 (+)	NCBI			mm8
Celera	17	92,856,967 - 92,909,156 (+)	NCBI		Celera
Cytogenetic Map	17	E4	NCBI

Foxn2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955441	14,882,291 - 14,950,878 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955441	14,882,312 - 14,950,878 (+)	NCBI	ChiLan1.0	ChiLan1.0

FOXN2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	2A	49,363,949 - 49,428,502 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	49,364,147 - 49,428,502 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	2A	48,441,683 - 48,506,631 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

FOXN2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	10	50,259,940 - 50,288,901 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	10	50,225,559 - 50,291,817 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Foxn2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936508	4,233,575 - 4,283,845 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FOXN2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	92,268,782 - 92,336,865 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	92,268,780 - 92,337,117 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	98,079,373 - 98,147,147 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FOXN2
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	58,783,009 - 58,848,672 (-)	NCBI
ChlSab1.1 Ensembl	14	58,782,897 - 58,835,451 (-)	Ensembl

Foxn2
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624738	29,538,099 - 29,609,214 (+)	NCBI

Position Markers

D6Rat213

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	6	12,104,119 - 12,104,215	NCBI	Rnor6.0
Rnor_5.0	6	22,072,861 - 22,072,957	UniSTS	Rnor5.0
RGSC_v3.4	6	12,019,225 - 12,019,322	RGD	RGSC3.4
RGSC_v3.4	6	12,019,226 - 12,019,322	UniSTS	RGSC3.4
RGSC_v3.1	6	12,019,225 - 12,019,322	RGD
Celera	6	5,887,672 - 5,887,768	UniSTS
SHRSP x BN Map	6	0.0	UniSTS
SHRSP x BN Map	6	0.0	RGD
Cytogenetic Map	6	q12	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2293709	Bss23	Bone structure and strength QTL 23	5.18	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	6	1	43665660	Rat
1331743	Uae28	Urinary albumin excretion QTL 28	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	1	41917988	Rat
738023	Alc17	Alcohol consumption QTL 17	3.1	0.003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	6	1	35623029	Rat
738024	Sach5	Saccharine consumption QTL 5	3.9	0.00039	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	6	1	44570292	Rat
1598843	Cm63	Cardiac mass QTL 63	2.6		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	6	1	23620518	Rat
2300176	Bmd51	Bone mineral density QTL 51	11.7	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	6	1	35623029	Rat
2300190	Bmd52	Bone mineral density QTL 52	11.2	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	6	1	35623029	Rat
2293650	Bss31	Bone structure and strength QTL 31	5.05	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	6	1	43665660	Rat
2293656	Bss28	Bone structure and strength QTL 28	6.79	0.0001	femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	6	1	43665660	Rat
634322	Bw12	Body weight QTL 12	0		body mass (VT:0001259)	body weight (CMO:0000012)	7	10173862	55173862	Rat
1576309	Emca7	Estrogen-induced mammary cancer QTL 7	4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	2537030	111715717	Rat
1578758	Tcas9	Tongue tumor susceptibility QTL 9	3.29		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	6	1	25048718	Rat
1578665	Bss16	Bone structure and strength QTL 16	4.4		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	6	6161722	76002731	Rat
1578668	Bmd14	Bone mineral density QTL 14	3.8		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	6	6161722	76002731	Rat
1354616	Despr12	Despair related QTL 12		0.0012	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	6	1	35623029	Rat
2301972	Bp325	Blood pressure QTL 325	4.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	6	1	75623393	Rat
1354664	Slep2	Serum leptin concentration QTL 2	4.49		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	6	1120393	75023446	Rat
1359023	Bp272	Blood pressure QTL 272	2.5		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	1120393	28706721	Rat
1549905	Stresp10	Stress response QTL 10	6.83	0.0066	stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	6	1	35623029	Rat
1358190	Ept1	Estrogen-induced pituitary tumorigenesis QTL 1	4.4		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	6	8083222	21515439	Rat
2292589	Emca10	Estrogen-induced mammary cancer QTL 10		0.048	mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	6	1120393	46120393	Rat
2292616	Ept15	Estrogen-induced pituitary tumorigenesis QTL 15	4.4		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	6	8083222	21515439	Rat
8693645	Alc31	Alcohol consumption QTL 31	3.7	0.038	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	6	135053	23600274	Rat
7411603	Foco13	Food consumption QTL 13	5.5	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	6	1	42388212	Rat
7411584	Foco4	Food consumption QTL 4	4.3	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	6	1	44015370	Rat
8552962	Pigfal16	Plasma insulin-like growth factor 1 level QTL 16	9.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	6	1	42388212	Rat
7411542	Bw127	Body weight QTL 127	5.5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	1	42388212	Rat
9589129	Insul24	Insulin level QTL 24	19.06	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	6	1	42388212	Rat
8693699	Alc37	Alcohol consumption QTL 37	2.6	0.224	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	6	9974277	22477622	Rat
8693690	Alc35	Alcohol consumption QTL 35	2.2	0.606	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	6	9974277	22477622	Rat
9589048	Scfw3	Subcutaneous fat weight QTL 3	4.57	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	6	1	42388212	Rat
4145119	Mcs25	Mammary carcinoma susceptibility QTL 25		0.0001	mammary gland integrity trait (VT:0010552)	ratio of deaths to total study population during a period of time (CMO:0001023)	6	7009971	115379601	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	38
Count of miRNA genes:	36
Interacting mature miRNAs:	38
Transcripts:	ENSRNOT00000061693
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	30	42	26	19	26	8	8	74	32	36	11	8
Low		13	15	15		15		3		3	5
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_006239736	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239738	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039113051	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039113052	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039113053	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_237502	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACYVU010000163	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000061693 ⟹ ENSRNOP00000058404

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	6	12,179,227 - 12,205,446 (+)	Ensembl

RefSeq Acc Id:

XM_006225666 ⟹ XP_006225728

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Celera	6	5,792,179 - 5,835,379 (-)	NCBI

Sequence:

show sequence

CGGGAGCAGCTGCGGTGCTCTGCCATATTGTGTCTGGCCCGGCCCGGCCCGGCCTTCGCCTCCC
CTTCGCGGCGGCCGAGCTGACGAAATATAGGAGTAAATGGGTCCAGTAATTGGAATGACTCCGG
ATAAGAGAGCTGAGACCCCGGGAGCTGAGAAGGTTGCAGGACTGAGTCAGATTTACAAAATGGG
GAGTTTGCCTGAAGCTGGGGAAGCTTCCAGGCCAAAGGCCACTCTAGTGGGCAGTGACTCCACA
GATGACGAACTAACAAACTTGAACTGGCTTCATGAGAGTAGTGACCTTCTAACCAACCTCAGGC
TCGGCGGTGAAGGCCTTCCAATGGTTAGCCCATTGTATGACATAGAGGGAGATGATATGCCATC
CTTTGGACCATTGTGCTGCCAGAACCCAGAAAAGAAGTCAGCAACTTCCAAGCCCCCCTACTCC
TTTAGTCTTCTCATTTACATGGCCATCGAACACTCGCCAAATAAGTGCTTGCCTGTCAAAGAGA
TTTACAGCTGGATCCTGGATCGCTTCCCGTACTTTGCCACTGCACCTACAGGCTGGAAGAATTC
TGTTCGGCATAATCTATCCCTGAATAAATGTTTTCAGAAAGTGGAAAGAAGTCACGGCAAGGTT
AATGGAAAAGGCTCCTTATGGTGCGTTGATCCAGAATATAAGCCCAATCTTGTGCAGGCCTTGA
AGAAGCAACCGTTTTCCTCTCCACAAAGTGCTTCTTTATCGCCTCACTACTTAAGCTCTGTTCT
CAAGCAAAGTCAAGTGCAAACTCTTAAAGAATCTGATATTGATGCTGCCACTGCAATGATACTT
TTAAATACTTCAATAGAACAAGAGATGTTAGAGTGTGAGAAGCCTCTGCCTCTTAAAACATCAC
TGCAGAAAAAGAGGAGTTACGGCAGCGCGTTCAGTGCCCCCAGTGCTGTGCAACTGCAGGAGAG
CCATTCTCCAGCCTCCAGCATCGACCCAAAAGCAGACCATAACTACAGTGCCAGCGGCGTGGCA
GCCCAGCGTTGTGCATCGAGGGCTAGCATGTCTTCCCTGTCTTCTGTGGATGAGGTGTATGAAT
TCATCCCCAAGAGTAGCCATGGCGGGAGTGACGGCAGCGAAGGCTTCCACAGTGACGAGGAGAC
AGATGCTGAGGATGAGGATCCTCTTGCAGACAGTGGCTATGCACCGCAAGCTCTTGAAGACAGC
ACTCGGAAAGGACAGCCAGGCCAAAAGATTCCAAAACAGTCATGTCAAGAGATCGATGAGGAGC
TCAAAGAAGCAGCCGGGTCGCTGCTCCACCTTGCTGGAATCCGCACCTGCCTTGGCTCCCTTAT
AAGTACTGCAAAGGCACAAAGTCAAAAACACCGGAAAAAGTAGAAATGCTTATAGTGTGGAGTT
GTTTTAAAGTGTGGCAATACTCTTCTACTTAACTTTTTACCAGGGATACAGAGCCATATCAGAT
GGACCGCTTTAGCTAAGGGTGGGGGAGGCGTGCCACTTGTTTCTTTCTAAATATTTTTTGGTTG
CTTTTCTTTTTTGTTTAAACAGTTGCTCTTAGGATCATGCATAATTGTAAATCTGACATAAAGG
ACCCCACAACATAATT

hide sequence

RefSeq Acc Id:

XM_006239736 ⟹ XP_006239798

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	6,018,653 - 6,065,216 (-)	NCBI
Rnor_6.0	6	12,158,127 - 12,202,220 (+)	NCBI
Rnor_5.0	6	22,124,363 - 22,170,775 (+)	NCBI

Sequence:

show sequence

AGGGGAGGAAGCCAGCGGGCGGGAGGGGGATGTGGTGCTGCGGCGGCCGCCACCGCAGCTGCCG
CTGCCTGCTCGCGGCTGGGTGTCCCGGAGGCGGCTGCTGGGAGCCACGGGAGCAGCTGCGGTGC
TCTGCCATATTGTGTCTGGCCCGGCCCGGCCCGGCTTCGCTCCCTTCGCGGCGGCCGAGCTGAC
GAAATATAGGAGTAAATGGGTCCAGTAATTGGAATGACTCCGGATAAGAGAGCTGAGACCCCGG
GAGCTGAGAAGGTTGCAGGACTGAGTCAGATTTACAAAATGGGGAGTTTGCCTGAAGCTGGGGA
AGCTTCCAGGCCAAAGGCCACTCTAGTGGGCAGTGACTCCACAGATGACGAACTAACAAACTTG
AACTGGCTTCATGAGAGTAGTGACCTTCTAACCAACCTCAGGCTCGGCGGTGAAGGCCTTCCAA
TGGTTAGCCCATTGTATGACATAGAGGGAGATGATATGCCATCCTTTGGACCATTGTGCTGCCA
GAACCCAGAAAAGAAGTCAGCAACTTCCAAGCCCCCCTACTCCTTTAGTCTTCTCATTTACATG
GCCATCGAACACTCGCCAAATAAGTGCTTGCCTGTCAAAGAGATTTACAGCTGGATCCTGGATC
GCTTCCCGTACTTTGCCACTGCACCTACAGGCTGGAAGAATTCTGTTCGGCATAATCTATCCCT
GAATAAATGTTTTCAGAAAGTGGAAAGAAGTCACGGCAAGGTTAATGGAAAAGGCTCCTTATGG
TGCGTTGATCCAGAATATAAGCCCAATCTTGTGCAGGCCTTGAAGAAGCAACCGTTTTCCTCTC
CACAAAGTGCTTCTTTATCGCCTCACTACTTAAGCTCTGTTCTCAAGCAAAGTCAAGTGCAAAC
TCTTAAAGAATCTGATATTGATGCTGCCACTGCAATGATACTTTTAAATACTTCAATAGAACAA
GAGATGTTAGAGTGTGAGAAGCCTCTGCCTCTTAAAACATCACTGCAGAAAAAGAGGAGTTACG
GCAGCGCGTTCAGTGCCCCCAGTGCTGTGCAACTGCAGGAGAGCCATTCTCCAGCCTCCAGCAT
CGACCCAAAAGCAGACCATAACTACAGTGCCAGCGGCGTGGCAGCCCAGCGTTGTGCATCGAGG
GCTAGCATGTCTTCCCTGTCTTCTGTGGATGAGGTGTATGAATTCATCCCCAAGAGTAGCCATG
GCGGGAGTGACGGCAGCGAAGGCTTCCACAGTGACGAGGAGACAGATGCTGAGGATGAGGATCC
TCTTGCAGACAGTGGCTATGCACCGCAAGCTCTTGAAGACAGCACTCGGAAAGGACAGCCAGGC
CAAAAGATTCCAAAACAGTCATGTCAAGAGATCGATGAGGAGCTCAAAGAAGCAGCCGGGTCGC
TGCTCCACCTTGCTGGAATCCGCACCTGCCTTGGCTCCCTTATAAGTACTGCAAAGGCACAAAG
TCAAAAACACCGGAAAAAGTAGAAATGCTTATAGTGTGGAGTTGTTTTAAAGTGTGGCAATACT
CTTCTACTTAACTTTTTACCAGGGATACAGAGCCATATCAGATGGACCGCTTTAGCTAAGGGTG
GGGGAGGCGTGCCACTTGTTTCTTTCTAAATATTTTTTGGTTGCTTTTCTTTTTTGTTTAAACA
GTTGCTCTTAGGATCATGCATAATTGTAAATCTGACATAAAGGACCCCACAACATAATT

hide sequence

RefSeq Acc Id:

XM_006239738 ⟹ XP_006239800

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	6,018,885 - 6,064,991 (-)	NCBI
Rnor_6.0	6	12,158,466 - 12,202,220 (+)	NCBI
Rnor_5.0	6	22,124,363 - 22,170,775 (+)	NCBI

Sequence:

show sequence

TCAGGCGAGCCCACGCTCCTGGGGGTGTGGAACCGAGGCGGGCACGGCCCCGTGAGGAGTTAGG
AGTTTCTCCTGAGAAATATAGGAGTAAATGGGTCCAGTAATTGGAATGACTCCGGATAAGAGAG
CTGAGACCCCGGGAGCTGAGAAGGTTGCAGGACTGAGTCAGATTTACAAAATGGGGAGTTTGCC
TGAAGCTGGGGAAGCTTCCAGGCCAAAGGCCACTCTAGTGGGCAGTGACTCCACAGATGACGAA
CTAACAAACTTGAACTGGCTTCATGAGAGTAGTGACCTTCTAACCAACCTCAGGCTCGGCGGTG
AAGGCCTTCCAATGGTTAGCCCATTGTATGACATAGAGGGAGATGATATGCCATCCTTTGGACC
ATTGTGCTGCCAGAACCCAGAAAAGAAGTCAGCAACTTCCAAGCCCCCCTACTCCTTTAGTCTT
CTCATTTACATGGCCATCGAACACTCGCCAAATAAGTGCTTGCCTGTCAAAGAGATTTACAGCT
GGATCCTGGATCGCTTCCCGTACTTTGCCACTGCACCTACAGGCTGGAAGAATTCTGTTCGGCA
TAATCTATCCCTGAATAAATGTTTTCAGAAAGTGGAAAGAAGTCACGGCAAGGTTAATGGAAAA
GGCTCCTTATGGTGCGTTGATCCAGAATATAAGCCCAATCTTGTGCAGGCCTTGAAGAAGCAAC
CGTTTTCCTCTCCACAAAGTGCTTCTTTATCGCCTCACTACTTAAGCTCTGTTCTCAAGCAAAG
TCAAGTGCAAACTCTTAAAGAATCTGATATTGATGCTGCCACTGCAATGATACTTTTAAATACT
TCAATAGAACAAGAGATGTTAGAGTGTGAGAAGCCTCTGCCTCTTAAAACATCACTGCAGAAAA
AGAGGAGTTACGGCAGCGCGTTCAGTGCCCCCAGTGCTGTGCAACTGCAGGAGAGCCATTCTCC
AGCCTCCAGCATCGACCCAAAAGCAGACCATAACTACAGTGCCAGCGGCGTGGCAGCCCAGCGT
TGTGCATCGAGGGCTAGCATGTCTTCCCTGTCTTCTGTGGATGAGGTGTATGAATTCATCCCCA
AGAGTAGCCATGGCGGGAGTGACGGCAGCGAAGGCTTCCACAGTGACGAGGAGACAGATGCTGA
GGATGAGGATCCTCTTGCAGACAGTGGCTATGCACCGCAAGCTCTTGAAGACAGCACTCGGAAA
GGACAGCCAGGCCAAAAGATTCCAAAACAGTCATGTCAAGAGATCGATGAGGAGCTCAAAGAAG
CAGCCGGGTCGCTGCTCCACCTTGCTGGAATCCGCACCTGCCTTGGCTCCCTTATAAGTACTGC
AAAGGCACAAAGTCAAAAACACCGGAAAAAGTAGAAATGCTTATAGTGTGGAGTTGTTTTAAAG
TGTGGCAATACTCTTCTACTTAACTTTTTACCAGGGATACAGAGCCATATCAGATGGACCGCTT
TAGCTAAGGGTGGGGGAGGCGTGCCACTTGTTTCTTTCTAAATATTTTTTGGTTGCTTTTCTTT
TTTGTTTAAACAGTTGCTCTTAGGATCATGCATAATTGTAAATCTGACATAAAGGACCCCACAA
CATAATT

hide sequence

RefSeq Acc Id:

XM_008776155 ⟹ XP_008774377

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Celera	6	5,792,179 - 5,834,404 (-)	NCBI

Sequence:

show sequence

GAGGAGGAGTCATAAGTGCAGAGAAATGACAGACTTTTTTTTTTCCTACTTGCAACTCCGCCGC
GAGCGGTTAATTATTTCCAGAAATATAGGAGTAAATGGGTCCAGTAATTGGAATGACTCCGGAT
AAGAGAGCTGAGACCCCGGGAGCTGAGAAGGTTGCAGGACTGAGTCAGATTTACAAAATGGGGA
GTTTGCCTGAAGCTGGGGAAGCTTCCAGGCCAAAGGCCACTCTAGTGGGCAGTGACTCCACAGA
TGACGAACTAACAAACTTGAACTGGCTTCATGAGAGTAGTGACCTTCTAACCAACCTCAGGCTC
GGCGGTGAAGGCCTTCCAATGGTTAGCCCATTGTATGACATAGAGGGAGATGATATGCCATCCT
TTGGACCATTGTGCTGCCAGAACCCAGAAAAGAAGTCAGCAACTTCCAAGCCCCCCTACTCCTT
TAGTCTTCTCATTTACATGGCCATCGAACACTCGCCAAATAAGTGCTTGCCTGTCAAAGAGATT
TACAGCTGGATCCTGGATCGCTTCCCGTACTTTGCCACTGCACCTACAGGCTGGAAGAATTCTG
TTCGGCATAATCTATCCCTGAATAAATGTTTTCAGAAAGTGGAAAGAAGTCACGGCAAGGTTAA
TGGAAAAGGCTCCTTATGGTGCGTTGATCCAGAATATAAGCCCAATCTTGTGCAGGCCTTGAAG
AAGCAACCGTTTTCCTCTCCACAAAGTGCTTCTTTATCGCCTCACTACTTAAGCTCTGTTCTCA
AGCAAAGTCAAGTGCAAACTCTTAAAGAATCTGATATTGATGCTGCCACTGCAATGATACTTTT
AAATACTTCAATAGAACAAGAGATGTTAGAGTGTGAGAAGCCTCTGCCTCTTAAAACATCACTG
CAGAAAAAGAGGAGTTACGGCAGCGCGTTCAGTGCCCCCAGTGCTGTGCAACTGCAGGAGAGCC
ATTCTCCAGCCTCCAGCATCGACCCAAAAGCAGACCATAACTACAGTGCCAGCGGCGTGGCAGC
CCAGCGTTGTGCATCGAGGGCTAGCATGTCTTCCCTGTCTTCTGTGGATGAGGTGTATGAATTC
ATCCCCAAGAGTAGCCATGGCGGGAGTGACGGCAGCGAAGGCTTCCACAGTGACGAGGAGACAG
ATGCTGAGGATGAGGATCCTCTTGCAGACAGTGGCTATGCACCGCAAGCTCTTGAAGACAGCAC
TCGGAAAGGACAGCCAGGCCAAAAGATTCCAAAACAGTCATGTCAAGAGATCGATGAGGAGCTC
AAAGAAGCAGCCGGGTCGCTGCTCCACCTTGCTGGAATCCGCACCTGCCTTGGCTCCCTTATAA
GTACTGCAAAGGCACAAAGTCAAAAACACCGGAAAAAGTAGAAATGCTTATAGTGTGGAGTTGT
TTTAAAGTGTGGCAATACTCTTCTACTTAACTTTTTACCAGGGATACAGAGCCATATCAGATGG
ACCGCTTTAGCTAAGGGTGGGGGAGGCGTGCCACTTGTTTCTTTCTAAATATTTTTTGGTTGCT
TTTCTTTTTTGTTTAAACAGTTGCTCTTAGGATCATGCATAATTGTAAATCTGACATAAAGGAC
CCCACAACATAATT

hide sequence

RefSeq Acc Id:

XM_017594407 ⟹ XP_017449896

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	12,179,226 - 12,205,450 (+)	NCBI

Sequence:

show sequence

AAATATAGGAGTAAATGGGTCCAGTAATTGGAATGACTCCGGATAAGAGAGCTGAGACCCCGGG
AGCTGAGAAGGTTGCAGGACTGAGTCAGATTTACAAAATGGGGAGTTTGCCTGAAGCTGGGGAA
GCTTCCAGGCCAAAGGCCACTCTAGTGGGCAGTGACTCCACAGATGACGAACTAACAAACTTGA
ACTGGCTTCATGAGAGTAGTGACCTTCTAACCAACCTCAGGCTCGGCGGTGAAGGCCTTCCAAT
GGTTAGCCCATTGTATGACATAGAGGGAGATGATATGCCATCCTTTGGACCATTGTGCTGCCAG
AACCCAGAAAAGAAGTCAGCAACTTCCAAGCCCCCCTACTCCTTTAGTCTTCTCATTTACATGG
CCATCGAACACTCGCCAAATAAGTGCTTGCCTGTCAAAGAGATTTACAGCTGGATCCTGGATCG
CTTCCCGTACTTTGCCACTGCACCTACAGGCTGGAAGAATTCTGTTCGGCATAATCTATCCCTG
AATAAATGTTTTCAGAAAGTGGAAAGAAGTCACGGCAAGGTTAATGGAAAAGGCTCCTTATGGT
GCGTTGATCCAGAATATAAGCCCAATCTTGTGCAGGCCTTGAAGAAGCAACCGTTTTCCTCTCC
ACAAAGTGCTTCTTTATCGCCTCACTACTTAAGCTCTGTTCTCAAGCAAAGTCAAGTGCAAACT
CTTAAAGAATCTGATATTGATGCTGCCACTGCAATGATACTTTTAAATACTTCAATAGAACAAG
AGATGTTAGAGTGTGAGAAGCCTCTGCCTCTTAAAACATCACTGCAGAAAAAGAGGAGTTACGG
CAGCGCGTTCAGTGCCCCCAGTGCTGTGCAACTGCAGGAGAGCCATTCTCCAGCCTCCAGCATC
GACCCAAAAGCAGACCATAACTACAGTGCCAGCGGCGTGGCAGCCCAGCGTTGTGCATCGAGGG
CTAGCATGTCTTCCCTGTCTTCTGTGGATGAGGTGTATGAATTCATCCCCAAGAGTAGCCATGG
CGGGAGTGACGGCAGCGAAGGCTTCCACAGTGACGAGGAGACAGATGCTGAGGATGAGGATCCT
CTTGCAGACAGTGGCTATGCACCGCAAGCTCTTGAAGACAGCACTCGGAAAGGACAGCCAGGCC
AAAAGATTCCAAAACAGTCATGTCAAGAGATCGATGAGGAGCTCAAAGAAGCAGCCGGGTCGCT
GCTCCACCTTGCTGGAATCCGCACCTGCCTTGGCTCCCTTATAAGTACTGCAAAGGCACAAAGT
CAAAAACACCGGAAAAAGTAGAAATGCTTATAGTGTGGAGTTGTTTTAAAGTGTGGCAATACTC
TTCTACTTAACTTTTTACCAGGGATACAGAGCCATATCAGATGGACCGCTTTAGCTAAGGGTGG
GGGAGGCGTGCCACTTGTTTCTTTCTAAATATTTTTTGGTTGCTTTTCTTTTTTGTTTAAACAG
TTGCTCTTAGGATCATGCATAATTGTAAATCTGACATAAAGGACCCCACAACATAATTTCTGTG
AATAAGTGTCTCCCAGATTTGGAAAATTTCGTATAGAAAAATTCTCAGCCTCTGTCTTAAACTT
GTAGGGAAAAAATCTCTTTGTTAATCGGTTAAAAAATTGGTAACTTGGATTTTCATTTTTCTTC
CCATTCTGCTGTGAACTAGTTACTGGTATCTCCCTGACGTGCTTCTCTCCTGACGTAGTGCAGG
AGGGTGAGATGGGATCGCTTGTCTGACCTTGTTTCGGTTGTTCTTTGTTGCAGCATGAGCTTGG
CCTCTTCTGCAGCGGGAAGAGCCTAGGTGCCTAGAAGGTTCTCTGGTCTGTGGAGAATGGAGCA
GTTGTAAGGCATGGGAAGGCCATCTGGGGATGAGGCTCATCTCATGACTAGCTCCTGCAGTAGC
ATCTCTGCAATGCCCCACCTCACAGTTAACGCACAGCCTCGAGGACCTCCGCCCTTCCCCAGAG
CACTCTGCAAGCGCTTAAGCTTTAGCTGCTCATTGTCTTGCTTAAGTAAAAATGTCTGAGGATG
CAGCCGGAGAGTGTCATGGAGTAGCAGTCGTCTTGACACACGTGCAGAGAGGCTTGCATTTGTT
TTCTCACCGTAGTGTAGTGAAGGGAGAGTGTGACATCAGAAGTAAAGTAGGTCACTGAGGGCGG
AACTGCCCAAGCTTCGTAAAGTTAAAATTAAATGTATAGTGAGTTAGATTTAAAACAGTATTAA
ATGTCCTACTGAGGAAGATGTAGAGATCAATATCTTCAGGGATTTCAAAATACATAGAAAAACT
GGGTCTTACACAAAACTTTGAGAAGGCAATGTAATAACCTGTATGTGCCATTAATCCACGCTAG
AAGATTTTATATTACCATTTCAAAAGTGCATTGGCTAAGATTTTAAATATTTGAACAAAACTGC
TTATATGAGACAGTTTTGACTATAGTGTTAAGAACAGGGATACTAAGGCTATATAACTCATATA
TATTTTTTTACAGTGGTGGGAGAAATTTTCAGAAACCTTAGTCTTATTTCATGATACGTCCTGT
ATTCTAGACAGTGACCTTGAGTTTTTCTCACTTACGTGCACACACCCTTGCTGTGCACACACAG
GCTCAGGTTAGCTTCCTGCGTTCAAATGTTTTTATGGCTCTACAGCATCTTCTTGGACTTTTTA
AAGTGACAAATGTTTTTATTTTTACTTCTAAATGTTTTTCTGGGCAATATTGTCAAATAAGAAA
AACAAAAGAATGTTTCTTATGTGACCACACTTAAGCTATAACAGTATTGATACACTCCTGAATC
CATGTTAGTTATAATTGAATTTGGAGAGCCAAATTAATGGAATTGGTGCTACTAAAATATAGAC
ATTTTTCTTTTATTGATAATGCAGGATGAGGAATTTGGAATTTTTCTAATTCATAAATGTTATC
TCTCAGAAAACAGTTAAAGTTTTTACTGCAGACTGAATGAAACACCAAACAGAAGTGTGGTTTT
AGTGTGGTACAAGTCTTGAAGAGGTGGTGGAGTTCGGATGATAGCATGGACTTGTGCAGCTCCT
CACCGTGCCCTTCTGAGAGGTCCTTCACAGTTGTGCTCACCGCATTCTGTTCCGACTGATGTCC
CTGGCCAGGGGGCGGGCTGTTCTGCAAACAGGAAAATGATCTGAAGTAGGAGGAAAGAGTTGTT
CTCAGCTCCAAGAGAAGGATCTTTTCAGAATTAATGTTTAGGCAGTAACTTAAATTCCTTTCCC
TCCTTCAGTGGCCTCTTATTTAAAGCAGCACCCATTAGCAAGGATGGCGTCATGTGCCTGTGCA
CTTAGAACTAACATGCAGAGTCCCTAACAACTTGCACTTCTTGTAGGATTCAGTGTCTCACTTT
CCGTTTGCTGCTGTGCCCAGGCACCCACTTCAAGGGGAGAACCTTCATGATTGGGTCCCTTATG
CTGTTCTTGGAGATTATGTGCCTATTTGGTGTGCTTAGCCTGAAGCATGGCTTGGAACTATCCA
GTTGAGGAAGTCATCCTGAATTTTACGGGCTAGAAATTCCCAGAAAATCGCAAGCTTTGTGTAA
TAAAGACAGCTTAGAAATCCAAGGACAACATACATGTTTCAATCATTTAAACTGGTTTTAGCTA
AGGTATACTTTGTCTTATATCAAAATAAGAATTTTGTTGGAACCAATTCCATTTTTAATGGATT
CCTAATAAAAGTTGTGTCTTAGCACTATTAACTTTATTTTCTACATTGCCAAGAGAATCAGTGT
TTCTTGAATATGTCTTTGAAATTTGTGCAATATATTAAAAATAGTTGATTTCTTTGCTTTCAAA
TTTAGGATGAAATATTGCCTCAATCAGTAGAAAAGCAGGGGTGCATCACCCCTTTCCTTGGAGC
CTTTTCTGTTCTCATAGCCAGCACGACTTCTCTTAACTCAGATCCTTTGTACATTGTAAAGTTT
AGCACATGTTGTCACCGCTTTCTGAGGCATTCTGTAAAGGGTTCATACTAGATGGTCAGTTAAA
TACACGTTAGCATAGTTGAAAGCTAGAGCAAGAGTTGAGGGAATACTTGTGTCTTGTAGACTGG
AGGCCTTCTCAGCAGCAAAGGCTGTTGTCTCAGATGGACAGCAGCTTAACGAACGCCCTTTGAA
AACTATAAGGCAACTTTTGAGGCTTTCTGGTTTACATATATGTCATGGAGATTTTTTATTATTA
TTTTGAAATGTCTAAGTTTTGATTAAAGTTTACTCCAATGTGTTGATGATGTAATCATATTTAT
TGAAAGGCAAAATAGAATGTTTTCATGTTAAACCTGCCATTTCCCAAGACTATTCTTTGCATTT
AACTGCCAGTGCCATTGTCAAAGTTGTACTTTTTTTATTAAACACAGTGCTTAATTTTAAAGTA
TTATGTTGCCATCATAGTGTATAAAATGTATAATTGCCATTCATTGTAACTATTATTTATTTTT
AAACTAAAGTATAAGAAAACCTTTTGATTAAAGAAATTTGTTATTAAATTGTTTTCTCTTTTCT
GATGTAGCATAAAAACTTCTGAGTTTAACTGCCAACAGATGACCAACCACAAGTGAACCACTTC
TCAGTTGCAGCCTTGCTTATAGCAGAAACAACTTATAAACATTTAGTTTTTTTATCTAATCTCT
GACTATTAAAATGTTTATAAAGTTTATTTTTACCAAAGATATGCAATTCATTATGATAAAGTTG
CAGAATAAACATCATTTTATAACA

hide sequence

RefSeq Acc Id:

XM_017603177 ⟹ XP_017458666

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Celera	6	5,788,949 - 5,814,559 (-)	NCBI

Sequence:

show sequence

AAATATAGGAGTAAATGGGTCCAGTAATTGGAATGACTCCGGATAAGAGAGCTGAGACCCCGGG
AGCTGAGAAGGTTGCAGGACTGAGTCAGATTTACAAAATGGGGAGTTTGCCTGAAGCTGGGGAA
GCTTCCAGGCCAAAGGCCACTCTAGTGGGCAGTGACTCCACAGATGACGAACTAACAAACTTGA
ACTGGCTTCATGAGAGTAGTGACCTTCTAACCAACCTCAGGCTCGGCGGTGAAGGCCTTCCAAT
GGTTAGCCCATTGTATGACATAGAGGGAGATGATATGCCATCCTTTGGACCATTGTGCTGCCAG
AACCCAGAAAAGAAGTCAGCAACTTCCAAGCCCCCCTACTCCTTTAGTCTTCTCATTTACATGG
CCATCGAACACTCGCCAAATAAGTGCTTGCCTGTCAAAGAGATTTACAGCTGGATCCTGGATCG
CTTCCCGTACTTTGCCACTGCACCTACAGGCTGGAAGAATTCTGTTCGGCATAATCTATCCCTG
AATAAATGTTTTCAGAAAGTGGAAAGAAGTCACGGCAAGGTTAATGGAAAAGGCTCCTTATGGT
GCGTTGATCCAGAATATAAGCCCAATCTTGTGCAGGCCTTGAAGAAGCAACCGTTTTCCTCTCC
ACAAAGTGCTTCTTTATCGCCTCACTACTTAAGCTCTGTTCTCAAGCAAAGTCAAGTGCAAACT
CTTAAAGAATCTGATATTGATGCTGCCACTGCAATGATACTTTTAAATACTTCAATAGAACAAG
AGATGTTAGAGTGTGAGAAGCCTCTGCCTCTTAAAACATCACTGCAGAAAAAGAGGAGTTACGG
CAGCGCGTTCAGTGCCCCCAGTGCTGTGCAACTGCAGGAGAGCCATTCTCCAGCCTCCAGCATC
GACCCAAAAGCAGACCATAACTACAGTGCCAGCGGCGTGGCAGCCCAGCGTTGTGCATCGAGGG
CTAGCATGTCTTCCCTGTCTTCTGTGGATGAGGTGTATGAATTCATCCCCAAGAGTAGCCATGG
CGGGAGTGACGGCAGCGAAGGCTTCCACAGTGACGAGGAGACAGATGCTGAGGATGAGGATCCT
CTTGCAGACAGTGGCTATGCACCGCAAGCTCTTGAAGACAGCACTCGGAAAGGACAGCCAGGCC
AAAAGATTCCAAAACAGTCATGTCAAGAGATCGATGAGGAGCTCAAAGAAGCAGCCGGGTCGCT
GCTCCACCTTGCTGGAATCCGCACCTGCCTTGGCTCCCTTATAAGTACTGCAAAGGCACAAAGT
CAAAAACACCGGAAAAAGTAGAAATGCTTATAGTGTGGAGTTGTTTTAAAGTGTGGCAATACTC
TTCTACTTAACTTTTTACCAGGGATACAGAGCCATATCAGATGGACCGCTTTAGCTAAGGGTGG
GGGAGGCGTGCCACTTGTTTCTTTCTAAATATTTTTTGGTTGCTTTTCTTTTTTGTTTAAACAG
TTGCTCTTAGGATCATGCATAATTGTAAATCTGACATAAAGGACCCCACAACATAATTTCTGTG
AATAAGTGTCTCCCAGATTTGGAAAATTTCGTATAGAAAAATTCTCAGCCTCTGTCTTAAACTT
GTAGGGAAAAAATCTCTTTGTTAATCGGTTAAAAAATTGGTAACTTGGATTTTCATTTTTCTTC
CCATTCTGCTGTGAACTAGTTACTGGTATCTCCCTGACGTGCTTCTCTCCTGACGTAGTGCAGG
AGGGTGAGATGGGATCGCTTGTCTGACCTTGTTTCGGTTGTTCTTTGTTGCAGCATGAGCTTGG
CCTCTTCTGCAGCGGGAAGAGCCTAGGTGCCTAGAAGGTTCTCTGGTCTGTGGAGAATGGAGCA
GTTGTAAGGCATGGGAAGGCCATCTGGGGATGAGGCTCATCTCATGACTAGCTCCTGCAGTAGC
ATCTCTGCAATGCCCCACCTCACAGTTAACGCACAGCCTCGAGGACCTCCGCCCTTCCCCAGAG
CACTCTGCAAGCGCTTAAGCTTTAGCTGCTCATTGTCTTGCTTAAGTAAAAATGTCTGAGGATG
CAGCCGGAGAGTGTCATGGAGTAGCAGTCGTCTTGACACACGTGCAGAGAGGCTTGCATTTGTT
TTCTCACCGTAGTGTAGTGAAGGGAGAGTGTGACATCAGAAGTAAAGTAGGTCACTGAGGGCGG
AACTGCCCAAGCTTCGTAAAGTTAAAATTAAATGTATAGTGAGTTAGATTTAAAACAGTATTAA
ATGTCCTACTGAGGAAGATGTAGAGATCAATATCTTCAGGGATTTCAAAATACATAGAAAAACT
GGGTCTTACACAAAACTTTGAGAAGGCAATGTAATAACCTGTATGTGCCATTAATCCACGCTAG
AAGATTTTATATTACCATTTCAAAAGTGCATTGGCTAAGATTTTAAATATTTGAACAAAACTGC
TTATATGAGACAGTTTTGACTATAGTGTTAAGAACAGGGATACTAAGGCTATATAACTCATATA
TATTTTTTTACAGTGGTGGGAGAAATTTTCAGAAACCTTAGTCTTATTTCATGATACGTCCTGT
ATTCTAGACAGTGACCTTGAGTTTTTCTCACTTACGTGCACACACCCTTGCTGTGCACACACAG
GCTCAGGTTAGCTTCCTGCGTTCAAATGTTTTTATGGCTCTACAGCATCTTCTTGGACTTTTTA
AAGTGACAAATGTTTTTATTTTTACTTCTAAATGTTTTTCTGGGCAATATTGTCAAATAAGAAA
AACAAAAGAATGTTTCTTATGTGACCACACTTAAGCTATAACAGTATTGATACACTCCTGAATC
CATGTTAGTTATAATTGAATTTGGAGAGCCAAATTAATGGAATTGGTGCTACTAAAATATAGAC
ATTTTTCTTTTATTGATAATGCAGGATGAGGAATTTGGAATTTTTCTAATTCATAAATGTTATC
TCTCAGAAAACAGTTAAAGTTTTTACTGCAGACTGAATGAAACACCAAACAGAAGTGTGGTTTT
AGTGTGGTACAAGTCTTGAAGAGGTGGTGGAGTTCGGATGATAGCATGGACTTGTGCAGCTCCT
CACCGTGCCCTTCTGAGAGGTCCTTCACAGTTGTGCTCACCGCATTCTGTTCCGACTGATGTCC
CTGGCCAGGGGGCGGGCTGTTCTGCAAACAGGAAAATGATCTGAAGTAGGAGGAAAGAGTTGTT
CTCAGCTCCAAGAGAAGGATCTTTTCAGATTTGATGTTTAGGCAGTAACTTAAATTCCTTTCCC
TCCTTCAGTGGCCTCTTATTTAAAGCAGCAGCCATTAGCAAGGATGGCGTCATGTGCCTGTGCA
CTTAGAACTAACATGCAGAGTCCCTAACAACTTGCACTTCTTGTAGGATTCAGTGTCTCACTTT
CCGTTTGCTGCTGTGCCCAGGCACCCACTTCAAGGGGAGAACCTTCATGATTGGGTCCCTTATG
CTGTTCTTGGAGATTATGTGCCTATTTGGTGTGCTTAGCCTGAAGCATGGCTTGGAACTATCCA
GTTGAGGAAGTCATCCTGAATTTTACGGGCTAGAAATTCCCAGAAAATCGCAAGCTTTGTGTAA
TAAAGACAGCTTAGAAATCCAAGGACAACATACATGTTTCAATCATTTAAACTGGTTTTAGCTA
AGGTATACTTTGTCTTATATCAAAATAAGAATTTTGTTGGAACCAATTCCATTTTTAATGGATT
CCTAATAAAAGTTGTGTCTTAGCACTATTAACTTTATTTTCTACATTGCCAAGAGAATCAGTGT
TTCTTGAATATGTCTTTGAAATTTGTGCAATATATTAAAAATAGTTGATTTCTTTGCTTTCAAA
TTTAGGATGAAATATTGCCTCAATCAGTAGAAAAGCAGGGGTGCATCACCCCTTTCCTTGGAGC
CTTTTCTGTTCTCATAGCCAGCACGACTTCTCTTAACTCAGATCCTTTGTACATTGTAAAGTTT
AGCACATGTTGTCACCGCTTTCTGAGGCATTCTGTAAAGGGTTCATACTAGATGGTCAGTTAAA
TACACGTTAGCATAGTTGAAAGCTAGAGCAAGAGTTGAGGGAATACTTGTGTCTTGTAGACTGG
AGGCCTTCTCAGCAGCAAAGGCTGTTGTCTCAGATGGACAGCAGCTTAACGAACGCCCTTTGAA
AACTATAAGGCAACTTTTGAGGCTTTCTGGTTTACATATATGTCATGGAGATTTTTTATTATTA
TTTTGAAATGTCTAAGTTTTGATTAAAGTTTACTCCAATGTGTTGATGATGTAATCATATTTAT
TGAAAGGCAAAATAGAATGTTTTCATGTTAAACCTGCCATTTCCCAAGACTATTCTTTGCATTT
AACTGCCAGTGCCATTGTCAAAGTTGTACTTTTTTTATTAAACACAGTGCTTAATTTTAAAGTA
TTATGTTGCCATCATAGTGTATAAAATGTATAATTGCCATTCATTGTAACTATTATTTATTTTT
AAACTAAAGTATAAGAAAACCTTTTGATTAAAGAAATTTGTTATTAAATTGTTTTCTCTTTTCT
GATGTAGCATAAAAACTTCTGAGTTTAACTGCCAACAGATGACCAACCACAAGTGAACCACTTC
TCAGTTGCAGCCTTGCTTATAGCAGAAACAACTTATAAACATTTAGTTTTTTTATCTAATCTCT
GACTATTAAAATGTTTATAAAGTTTATTTTTACCAAAGATATGCAATTCATTATGATAAAGTTG
CAGAATAAACATCATTTTATAACA

hide sequence

RefSeq Acc Id:

XM_039113051 ⟹ XP_038968979

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	6,018,885 - 6,063,795 (-)	NCBI

RefSeq Acc Id:

XM_039113052 ⟹ XP_038968980

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	6,018,885 - 6,048,467 (-)	NCBI

RefSeq Acc Id:

XM_039113053 ⟹ XP_038968981

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	6,018,885 - 6,064,026 (-)	NCBI

RefSeq Acc Id:

XM_237502 ⟹ XP_237502

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	6,018,885 - 6,064,678 (-)	NCBI
Rnor_6.0	6	12,159,269 - 12,202,220 (+)	NCBI
Rnor_5.0	6	22,124,363 - 22,170,775 (+)	NCBI
RGSC_v3.4	6	12,267,384 - 12,278,896 (+)	RGD

Sequence:

show sequence

GAGGAGGAGTCATAAGTGCAGAGAAATGACAGACTTTTTTTTTTCCTACTTGCAACTCCGCCGC
GAGCGGTTAATTATTTCCAGAAATATAGGAGTAAATGGGTCCAGTAATTGGAATGACTCCGGAT
AAGAGAGCTGAGACCCCGGGAGCTGAGAAGGTTGCAGGACTGAGTCAGATTTACAAAATGGGGA
GTTTGCCTGAAGCTGGGGAAGCTTCCAGGCCAAAGGCCACTCTAGTGGGCAGTGACTCCACAGA
TGACGAACTAACAAACTTGAACTGGCTTCATGAGAGTAGTGACCTTCTAACCAACCTCAGGCTC
GGCGGTGAAGGCCTTCCAATGGTTAGCCCATTGTATGACATAGAGGGAGATGATATGCCATCCT
TTGGACCATTGTGCTGCCAGAACCCAGAAAAGAAGTCAGCAACTTCCAAGCCCCCCTACTCCTT
TAGTCTTCTCATTTACATGGCCATCGAACACTCGCCAAATAAGTGCTTGCCTGTCAAAGAGATT
TACAGCTGGATCCTGGATCGCTTCCCGTACTTTGCCACTGCACCTACAGGCTGGAAGAATTCTG
TTCGGCATAATCTATCCCTGAATAAATGTTTTCAGAAAGTGGAAAGAAGTCACGGCAAGGTTAA
TGGAAAAGGCTCCTTATGGTGCGTTGATCCAGAATATAAGCCCAATCTTGTGCAGGCCTTGAAG
AAGCAACCGTTTTCCTCTCCACAAAGTGCTTCTTTATCGCCTCACTACTTAAGCTCTGTTCTCA
AGCAAAGTCAAGTGCAAACTCTTAAAGAATCTGATATTGATGCTGCCACTGCAATGATACTTTT
AAATACTTCAATAGAACAAGAGATGTTAGAGTGTGAGAAGCCTCTGCCTCTTAAAACATCACTG
CAGAAAAAGAGGAGTTACGGCAGCGCGTTCAGTGCCCCCAGTGCTGTGCAACTGCAGGAGAGCC
ATTCTCCAGCCTCCAGCATCGACCCAAAAGCAGACCATAACTACAGTGCCAGCGGCGTGGCAGC
CCAGCGTTGTGCATCGAGGGCTAGCATGTCTTCCCTGTCTTCTGTGGATGAGGTGTATGAATTC
ATCCCCAAGAGTAGCCATGGCGGGAGTGACGGCAGCGAAGGCTTCCACAGTGACGAGGAGACAG
ATGCTGAGGATGAGGATCCTCTTGCAGACAGTGGCTATGCACCGCAAGCTCTTGAAGACAGCAC
TCGGAAAGGACAGCCAGGCCAAAAGATTCCAAAACAGTCATGTCAAGAGATCGATGAGGAGCTC
AAAGAAGCAGCCGGGTCGCTGCTCCACCTTGCTGGAATCCGCACCTGCCTTGGCTCCCTTATAA
GTACTGCAAAGGCACAAAGTCAAAAACACCGGAAAAAGTAGAAATGCTTATAGTGTGGAGTTGT
TTTAAAGTGTGGCAATACTCTTCTACTTAACTTTTTACCAGGGATACAGAGCCATATCAGATGG
ACCGCTTTAGCTAAGGGTGGGGGAGGCGTGCCACTTGTTTCTTTCTAAATATTTTTTGGTTGCT
TTTCTTTTTTGTTTAAACAGTTGCTCTTAGGATCATGCATAATTGTAAATCTGACATAAAGGAC
CCCACAACATAATT

hide sequence

Protein Sequences


Protein RefSeqs	XP_006239798	(Get FASTA)	NCBI Sequence Viewer
	XP_006239800	(Get FASTA)	NCBI Sequence Viewer
	XP_038968979	(Get FASTA)	NCBI Sequence Viewer
	XP_038968980	(Get FASTA)	NCBI Sequence Viewer
	XP_038968981	(Get FASTA)	NCBI Sequence Viewer
	XP_237502	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

XP_237502 ⟸ XM_237502

- UniProtKB:

F1LZM0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGPVIGMTPDKRAETPGAEKVAGLSQIYKMGSLPEAGEASRPKATLVGSDSTDDELTNLNWLHE
SSDLLTNLRLGGEGLPMVSPLYDIEGDDMPSFGPLCCQNPEKKSATSKPPYSFSLLIYMAIEHS
PNKCLPVKEIYSWILDRFPYFATAPTGWKNSVRHNLSLNKCFQKVERSHGKVNGKGSLWCVDPE
YKPNLVQALKKQPFSSPQSASLSPHYLSSVLKQSQVQTLKESDIDAATAMILLNTSIEQEMLEC
EKPLPLKTSLQKKRSYGSAFSAPSAVQLQESHSPASSIDPKADHNYSASGVAAQRCASRASMSS
LSSVDEVYEFIPKSSHGGSDGSEGFHSDEETDAEDEDPLADSGYAPQALEDSTRKGQPGQKIPK
QSCQEIDEELKEAAGSLLHLAGIRTCLGSLISTAKAQSQKHRKK

hide sequence

RefSeq Acc Id:

XP_006225728 ⟸ XM_006225666

- Sequence:

show sequence

MGPVIGMTPDKRAETPGAEKVAGLSQIYKMGSLPEAGEASRPKATLVGSDSTDDELTNLNWLHE
SSDLLTNLRLGGEGLPMVSPLYDIEGDDMPSFGPLCCQNPEKKSATSKPPYSFSLLIYMAIEHS
PNKCLPVKEIYSWILDRFPYFATAPTGWKNSVRHNLSLNKCFQKVERSHGKVNGKGSLWCVDPE
YKPNLVQALKKQPFSSPQSASLSPHYLSSVLKQSQVQTLKESDIDAATAMILLNTSIEQEMLEC
EKPLPLKTSLQKKRSYGSAFSAPSAVQLQESHSPASSIDPKADHNYSASGVAAQRCASRASMSS
LSSVDEVYEFIPKSSHGGSDGSEGFHSDEETDAEDEDPLADSGYAPQALEDSTRKGQPGQKIPK
QSCQEIDEELKEAAGSLLHLAGIRTCLGSLISTAKAQSQKHRKK

hide sequence

RefSeq Acc Id:

XP_006239798 ⟸ XM_006239736

- UniProtKB:

F1LZM0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGPVIGMTPDKRAETPGAEKVAGLSQIYKMGSLPEAGEASRPKATLVGSDSTDDELTNLNWLHE
SSDLLTNLRLGGEGLPMVSPLYDIEGDDMPSFGPLCCQNPEKKSATSKPPYSFSLLIYMAIEHS
PNKCLPVKEIYSWILDRFPYFATAPTGWKNSVRHNLSLNKCFQKVERSHGKVNGKGSLWCVDPE
YKPNLVQALKKQPFSSPQSASLSPHYLSSVLKQSQVQTLKESDIDAATAMILLNTSIEQEMLEC
EKPLPLKTSLQKKRSYGSAFSAPSAVQLQESHSPASSIDPKADHNYSASGVAAQRCASRASMSS
LSSVDEVYEFIPKSSHGGSDGSEGFHSDEETDAEDEDPLADSGYAPQALEDSTRKGQPGQKIPK
QSCQEIDEELKEAAGSLLHLAGIRTCLGSLISTAKAQSQKHRKK

hide sequence

RefSeq Acc Id:

XP_006239800 ⟸ XM_006239738

- UniProtKB:

F1LZM0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGPVIGMTPDKRAETPGAEKVAGLSQIYKMGSLPEAGEASRPKATLVGSDSTDDELTNLNWLHE
SSDLLTNLRLGGEGLPMVSPLYDIEGDDMPSFGPLCCQNPEKKSATSKPPYSFSLLIYMAIEHS
PNKCLPVKEIYSWILDRFPYFATAPTGWKNSVRHNLSLNKCFQKVERSHGKVNGKGSLWCVDPE
YKPNLVQALKKQPFSSPQSASLSPHYLSSVLKQSQVQTLKESDIDAATAMILLNTSIEQEMLEC
EKPLPLKTSLQKKRSYGSAFSAPSAVQLQESHSPASSIDPKADHNYSASGVAAQRCASRASMSS
LSSVDEVYEFIPKSSHGGSDGSEGFHSDEETDAEDEDPLADSGYAPQALEDSTRKGQPGQKIPK
QSCQEIDEELKEAAGSLLHLAGIRTCLGSLISTAKAQSQKHRKK

hide sequence

RefSeq Acc Id:

XP_008774377 ⟸ XM_008776155

- Sequence:

show sequence

MGPVIGMTPDKRAETPGAEKVAGLSQIYKMGSLPEAGEASRPKATLVGSDSTDDELTNLNWLHE
SSDLLTNLRLGGEGLPMVSPLYDIEGDDMPSFGPLCCQNPEKKSATSKPPYSFSLLIYMAIEHS
PNKCLPVKEIYSWILDRFPYFATAPTGWKNSVRHNLSLNKCFQKVERSHGKVNGKGSLWCVDPE
YKPNLVQALKKQPFSSPQSASLSPHYLSSVLKQSQVQTLKESDIDAATAMILLNTSIEQEMLEC
EKPLPLKTSLQKKRSYGSAFSAPSAVQLQESHSPASSIDPKADHNYSASGVAAQRCASRASMSS
LSSVDEVYEFIPKSSHGGSDGSEGFHSDEETDAEDEDPLADSGYAPQALEDSTRKGQPGQKIPK
QSCQEIDEELKEAAGSLLHLAGIRTCLGSLISTAKAQSQKHRKK

hide sequence

RefSeq Acc Id:

XP_017458666 ⟸ XM_017603177

- Sequence:

show sequence

MGPVIGMTPDKRAETPGAEKVAGLSQIYKMGSLPEAGEASRPKATLVGSDSTDDELTNLNWLHE
SSDLLTNLRLGGEGLPMVSPLYDIEGDDMPSFGPLCCQNPEKKSATSKPPYSFSLLIYMAIEHS
PNKCLPVKEIYSWILDRFPYFATAPTGWKNSVRHNLSLNKCFQKVERSHGKVNGKGSLWCVDPE
YKPNLVQALKKQPFSSPQSASLSPHYLSSVLKQSQVQTLKESDIDAATAMILLNTSIEQEMLEC
EKPLPLKTSLQKKRSYGSAFSAPSAVQLQESHSPASSIDPKADHNYSASGVAAQRCASRASMSS
LSSVDEVYEFIPKSSHGGSDGSEGFHSDEETDAEDEDPLADSGYAPQALEDSTRKGQPGQKIPK
QSCQEIDEELKEAAGSLLHLAGIRTCLGSLISTAKAQSQKHRKK

hide sequence

RefSeq Acc Id:

XP_017449896 ⟸ XM_017594407

- Sequence:

show sequence

MGPVIGMTPDKRAETPGAEKVAGLSQIYKMGSLPEAGEASRPKATLVGSDSTDDELTNLNWLHE
SSDLLTNLRLGGEGLPMVSPLYDIEGDDMPSFGPLCCQNPEKKSATSKPPYSFSLLIYMAIEHS
PNKCLPVKEIYSWILDRFPYFATAPTGWKNSVRHNLSLNKCFQKVERSHGKVNGKGSLWCVDPE
YKPNLVQALKKQPFSSPQSASLSPHYLSSVLKQSQVQTLKESDIDAATAMILLNTSIEQEMLEC
EKPLPLKTSLQKKRSYGSAFSAPSAVQLQESHSPASSIDPKADHNYSASGVAAQRCASRASMSS
LSSVDEVYEFIPKSSHGGSDGSEGFHSDEETDAEDEDPLADSGYAPQALEDSTRKGQPGQKIPK
QSCQEIDEELKEAAGSLLHLAGIRTCLGSLISTAKAQSQKHRKK

hide sequence

RefSeq Acc Id:

ENSRNOP00000058404 ⟸ ENSRNOT00000061693

RefSeq Acc Id:

XP_038968981 ⟸ XM_039113053

RefSeq Acc Id:

XP_038968979 ⟸ XM_039113051

RefSeq Acc Id:

XP_038968980 ⟸ XM_039113052

Protein Domains

Fork-head

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1562291	AgrOrtholog
Ensembl Genes	ENSRNOG00000040110	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000058404	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000061693	UniProtKB/TrEMBL
Gene3D-CATH	1.10.10.10	UniProtKB/TrEMBL
InterPro	TF_fork_head	UniProtKB/TrEMBL
	TF_fork_head_CS	UniProtKB/TrEMBL
	TF_fork_head_CS_2	UniProtKB/TrEMBL
	WH-like_DNA-bd_sf	UniProtKB/TrEMBL
	WH_DNA-bd_sf	UniProtKB/TrEMBL
KEGG Report	rno:301676	UniProtKB/TrEMBL
NCBI Gene	301676	ENTREZGENE
Pfam	Fork_head	UniProtKB/TrEMBL
PhenoGen	Foxn2	PhenoGen
PRINTS	FORKHEAD	UniProtKB/TrEMBL
PROSITE	FORK_HEAD_1	UniProtKB/TrEMBL
	FORK_HEAD_2	UniProtKB/TrEMBL
	FORK_HEAD_3	UniProtKB/TrEMBL
SMART	SM00339	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46785	UniProtKB/TrEMBL
UniProt	F1LZM0	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-10-11	Foxn2	forkhead box N2	RGD1562291	similar to Human T-cell leukemia virus enhancer factor (Forkhead box protein N2)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1562291	similar to Human T-cell leukemia virus enhancer factor (Forkhead box protein N2)	RGD1562291_predicted	similar to Human T-cell leukemia virus enhancer factor (Forkhead box protein N2) (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1562291_predicted	similar to Human T-cell leukemia virus enhancer factor (Forkhead box protein N2) (predicted)	LOC301676	similar to Human T-cell leukemia virus enhancer factor (Forkhead box protein N2)	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC301676	similar to Human T-cell leukemia virus enhancer factor (Forkhead box protein N2)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)