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Gene: Trim54 (tripartite motif-containing 54) Rattus norvegicus
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Symbol: Trim54
Name: tripartite motif-containing 54
Description: Predicted to have microtubule binding activity. Predicted to be involved in negative regulation of microtubule depolymerization. Predicted to localize to the microtubule associated complex. Orthologous to human TRIM54 (tripartite motif containing 54); INTERACTS WITH (RS)-amphetamine; 2,2',5,5'-tetrachlorobiphenyl; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC362708; ring finger protein 30; Rnf30; tripartite motif-containing protein 54
Orthologs:
Homo sapiens (human) : TRIM54 (tripartite motif containing 54)  HGNC  Alliance
Mus musculus (house mouse) : Trim54 (tripartite motif-containing 54)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Trim54 (tripartite motif containing 54)
Pan paniscus (bonobo/pygmy chimpanzee) : TRIM54 (tripartite motif containing 54)
Canis lupus familiaris (dog) : TRIM54 (tripartite motif containing 54)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Trim54 (tripartite motif containing 54)
Sus scrofa (pig) : TRIM54 (tripartite motif containing 54)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0626,603,364 - 26,623,950 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0636,419,744 - 36,439,076 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4625,218,008 - 25,237,575 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1625,220,960 - 25,240,528 (-)NCBI
Celera624,730,464 - 24,749,611 (-)NCBICelera
Cytogenetic Map6q14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Trim54
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1306453
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.