 Gene-Chemical Interaction Annotations | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene Ontology Annotations |
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Analyze GeneStrainQTL List |
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Gene Annotator (Annotation Comparison) |
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MOET (Multi-Ontology Enrichement) |
GOLF (Gene-Ortholog Location Finder) |
Gene Ontology AnnotationsDisease Annotations
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Gene-Chemical Interaction Annotations
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Gene Ontology AnnotationsBiological Process
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Cellular Component
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Molecular Function
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References - curated| 1. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
| 2. | RGD automated import pipeline for gene-chemical interactions |
Genomics
Comparative Map Data| Cenpo (Rattus norvegicus - Norway rat) |
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| CENPO (Homo sapiens - human) |
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| Cenpo (Mus musculus - house mouse) |
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| Cenpo (Chinchilla lanigera - long-tailed chinchilla) |
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| CENPO (Pan paniscus - bonobo/pygmy chimpanzee) |
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| CENPO (Canis lupus familiaris - dog) |
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| Cenpo (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| CENPO (Sus scrofa - pig) |
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Position Markers| RH134597 |
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QTLs in Region (Rnor_6.0)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
miRNA Target Status
Predicted Target Of
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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Expression
RNA-SEQ ExpressionHigh: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
| testis | heart | brain | ovary | uterus | skeletal muscle tissue | colon | gastrocnemius | forebrain | hindbrain | lung | spleen | liver | kidney | adrenal gland | thymus | |
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| High | ||||||||||||||||
| Medium | 19 | 20 | 12 | 13 | 1 | 12 | 4 | 9 | 18 | 16 | 6 | |||||
| Low | 3 | 22 | 11 | 2 | 4 | 1 | 2 | 6 | 14 | 21 | 11 | 2 | 23 | 19 | 8 | 2 |
| Below cutoff | 1 | 2 | 2 |
View RNA-SEQ Expression Data
Sequence
Nucleotide Sequences| RefSeq Transcripts | XM_001070398 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| XM_003750123 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006225719 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006239855 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008764544 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008764545 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008764546 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008776196 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008776197 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008776198 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AABR07063324 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AAHX01042417 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| FQ232123 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| FQ233391 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Reference Sequences
| RefSeq Acc Id: | XM_001070398 ⟹ XP_001070398 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
GTCCACTTGAGAAAAAGCACTTGAGAACCCTAAGAGAAGATGGAATCTGCAAATTCTTTGTGTChide sequence |
| RefSeq Acc Id: | XM_003750123 ⟹ XP_003750171 | ||||||||||||||
| RefSeq Status: | |||||||||||||||
| Type: | CODING | ||||||||||||||
| Position: |
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| Sequence: |
GTCCACTTGAGAAAAAGCACTTGAGAACCCTAAGAGAAGATGGAATCTGCAAATTCTTTGTGTChide sequence |
| RefSeq Acc Id: | XM_006225719 ⟹ XP_006225781 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
GTCCACTTGAGAAAAAGCACTTGAGAACCCTAAGAGAAGATGGAATCTGCAAATTCTTTGTGTChide sequence |
| RefSeq Acc Id: | XM_006239855 ⟹ XP_006239917 | ||||||||||||||
| RefSeq Status: | |||||||||||||||
| Type: | CODING | ||||||||||||||
| Position: |
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| Sequence: |
GTCCACTTGAGAAAAAGCACTTGAGAACCCTAAGAGAAGATGGAATCTGCAAATTCTTTGTGTChide sequence |
| RefSeq Acc Id: | XM_008764544 ⟹ XP_008762766 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
TTTGAAGTTGCGCTCGGCGGGAATTCTTAGAACTGGATCTTGGATCTTGAGCGGGGAAGCGTTGhide sequence |
| RefSeq Acc Id: | XM_008764545 ⟹ XP_008762767 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
GTCCACTTGAGAAAAAGCACTTGAGAACCCTAAGAGAAGATGGAATCTGCAAATTCTTTGTGTChide sequence |
| RefSeq Acc Id: | XM_008764546 ⟹ XP_008762768 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
GTCCACTTGAGAAAAAGCACTTGAGAACCCTAAGAGAAGATGGAATCTGCAAATTCTTTGTGTChide sequence |
| RefSeq Acc Id: | XM_008776196 ⟹ XP_008774418 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
TTTGAAGTTGCGCTCGGCGGGAATTCTTAGAACTGGATCTTGGATCTTGAGCGGGGAAGCGTTGhide sequence |
| RefSeq Acc Id: | XM_008776197 ⟹ XP_008774419 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
GTCCACTTGAGAAAAAGCACTTGAGAACCCTAAGAGAAGATGGAATCTGCAAATTCTTTGTGTChide sequence |
| RefSeq Acc Id: | XM_008776198 ⟹ XP_008774420 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
GTCCACTTGAGAAAAAGCACTTGAGAACCCTAAGAGAAGATGGAATCTGCAAATTCTTTGTGTChide sequence |
Protein Sequences| Protein RefSeqs | XP_001070398 | (Get FASTA) | NCBI Sequence Viewer |
| XP_003750171 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006225781 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006239917 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008762766 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008762767 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008762768 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008774418 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008774419 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008774420 | (Get FASTA) | NCBI Sequence Viewer |
Reference Sequences
| RefSeq Acc Id: | XP_001070398 ⟸ XM_001070398 |
| - Peptide Label: | isoform X5 |
| - UniProtKB: | M0R9I1 (UniProtKB/TrEMBL) |
| - Sequence: |
MESANSLCPGTECKGGVLAHLERLEAQMNRSNRKSEEPTVREKESSLRTKIRELQQQRDRLRVEhide sequence |
| RefSeq Acc Id: | XP_003750171 ⟸ XM_003750123 |
| - Peptide Label: | isoform X5 |
| - UniProtKB: | M0R9I1 (UniProtKB/TrEMBL) |
| - Sequence: |
MESANSLCPGTECKGGVLAHLERLEAQMNRSNRKSEEPTVREKESSLRTKIRELQQQRDRLRVEhide sequence |
| RefSeq Acc Id: | XP_006225781 ⟸ XM_006225719 |
| - Peptide Label: | isoform X4 |
| - Sequence: |
MESANSLCPGTECKGGVLAHLERLEAQMNRSNRKSEEPTVREKESSLRTKIRELQQQRDRLRVEhide sequence |
| RefSeq Acc Id: | XP_006239917 ⟸ XM_006239855 |
| - Peptide Label: | isoform X4 |
| - Sequence: |
MESANSLCPGTECKGGVLAHLERLEAQMNRSNRKSEEPTVREKESSLRTKIRELQQQRDRLRVEhide sequence |
| RefSeq Acc Id: | XP_008774420 ⟸ XM_008776198 |
| - Peptide Label: | isoform X3 |
| - Sequence: |
MESANSLCPGTECKGGVLAHLERLEAQMNRSNRKSEEPTVREKESSLRTKIRELQQQRDRLRVEhide sequence |
| RefSeq Acc Id: | XP_008774419 ⟸ XM_008776197 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
MESANSLCPGTECKGGVLAHLERLEAQMNRSNRKSEEPTVREKESSLRTKIRELQQQRDRLRVEhide sequence |
| RefSeq Acc Id: | XP_008774418 ⟸ XM_008776196 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
MESANSLCPGTECKGGVLAHLERLEAQMNRSNRKSEEPTVREKESSLRTKIRELQQQRDRLRVEhide sequence |
| RefSeq Acc Id: | XP_008762768 ⟸ XM_008764546 |
| - Peptide Label: | isoform X3 |
| - Sequence: |
MESANSLCPGTECKGGVLAHLERLEAQMNRSNRKSEEPTVREKESSLRTKIRELQQQRDRLRVEhide sequence |
| RefSeq Acc Id: | XP_008762767 ⟸ XM_008764545 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
MESANSLCPGTECKGGVLAHLERLEAQMNRSNRKSEEPTVREKESSLRTKIRELQQQRDRLRVEhide sequence |
| RefSeq Acc Id: | XP_008762766 ⟸ XM_008764544 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
MESANSLCPGTECKGGVLAHLERLEAQMNRSNRKSEEPTVREKESSLRTKIRELQQQRDRLRVEhide sequence |
TranscriptomeStrain Variation
Strain Sequence Variants (Rnor 6.0)
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Additional Information
External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:1590328 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000050111 | ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Protein | ENSRNOP00000066150 | ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Transcript | ENSRNOT00000070979 | ENTREZGENE, UniProtKB/TrEMBL |
| InterPro | Centromere_CenpO | UniProtKB/TrEMBL |
| KEGG Report | rno:684439 | UniProtKB/TrEMBL |
| NCBI Gene | 684439 | ENTREZGENE |
| Pfam | CENP-O | UniProtKB/TrEMBL |
| PhenoGen | Cenpo | PhenoGen |
| UniGene | Rn.227350 | ENTREZGENE |
| UniProt | M0R9I1 | ENTREZGENE, UniProtKB/TrEMBL |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2013-08-13 | Cenpo | centromere protein O | LOC684439 | hypothetical protein LOC684439 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2013-08-13 | Cenpo | centromere protein O | Cenpo | centromere protein O | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2006-11-20 | LOC684439 | hypothetical protein LOC684439 | Symbol and Name status set to provisional | 70820 | PROVISIONAL |
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| More on Cenpo | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: rn5 rn6 |
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NCBI Genome Data Viewer |
| RGD Object Information | |
| RGD ID: | 1590328 |
| Created: | 2006-11-20 |
| Species: | Rattus norvegicus |
| Last Modified: | 2019-11-27 |
| Status: | ACTIVE |
