 Gene-Chemical Interaction Annotations | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Analyze GeneStrainQTL List |
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Gene Ontology AnnotationsDisease AnnotationsGene-Chemical Interaction Annotations
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Gene Ontology AnnotationsBiological Process
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Cellular Component
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References - curatedReferences - uncuratedGenomics
Comparative Map Data| Pigf (Rattus norvegicus - Norway rat) |
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| PIGF (Homo sapiens - human) |
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| Pigf (Mus musculus - house mouse) |
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| Pigf (Chinchilla lanigera - long-tailed chinchilla) |
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| PIGF (Pan paniscus - bonobo/pygmy chimpanzee) |
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| PIGF (Canis lupus familiaris - dog) |
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| Pigf (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| PIGF (Sus scrofa - pig) |
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Position Markers| RH141769 |
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QTLs in Region (Rnor_6.0)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
miRNA Target Status
Predicted Target Of
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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Sequence
Nucleotide Sequences| RefSeq Transcripts | XM_006225672 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| XM_006225674 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006239725 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017594403 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017594404 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017594405 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017594406 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017603178 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017603179 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XR_001838269 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XR_001843870 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AABR07062819 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AAHX01041529 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| CH473947 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Reference Sequences
| RefSeq Acc Id: | XM_006225672 ⟹ XP_006225734 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
AAGTTCTCCTGGGGCAGGTGCAGGTCGCTCTGCGGACTGCTGCCGTGGCTTCCAAGGCGCCACGhide sequence |
| RefSeq Acc Id: | XM_006225674 ⟹ XP_006225736 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
GAGTCCCCCGCCTTCTGGTCTGCGCCTGCGCGAGGGGCCATGGCAGCCTGTCGCACCTGAGGGThide sequence |
| RefSeq Acc Id: | XM_006239725 ⟹ XP_006239787 | ||||||||||||||
| RefSeq Status: | |||||||||||||||
| Type: | CODING | ||||||||||||||
| Position: |
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| Sequence: |
GTGAGTCCCCCGCCTTCTGGTCTGCGCCTGCGCGAGGGGCCATGGCAGCCTGTCGCACCTGAGGhide sequence |
| RefSeq Acc Id: | XM_017594403 ⟹ XP_017449892 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
CCGGGCTCTCTCTGATGATGCCCCTCAGTTGCCCACACTCGCGCTGTCCGGGGTTGGGACAGAGhide sequence |
| RefSeq Acc Id: | XM_017594404 ⟹ XP_017449893 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
GCCGCCCGGGCTCTCTCTGATGATGCCCCTCAGTTGCCCACACTCGCGCTGTCCGGGGTTGGGAhide sequence |
| RefSeq Acc Id: | XM_017594405 ⟹ XP_017449894 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
TTCCTAAGTTCTCCTGGGGCAGGTGCAGGTCGCTCTGCGGACTGCTGCCGTGGCTTCCAAGGCGhide sequence |
| RefSeq Acc Id: | XM_017594406 ⟹ XP_017449895 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
GGCCGCCCGGGCTCTCTCTGATGATGCCCCTCAGTTGCCCACACTCGCGCTGTCCGGGGTTGGGhide sequence |
| RefSeq Acc Id: | XM_017603178 ⟹ XP_017458667 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
TTCCTAAGTTCTCCTGGGGCAGGTGCAGGTCGCTCTGCGGACTGCTGCCGTGGCTTCCAAGGCGhide sequence |
| RefSeq Acc Id: | XM_017603179 ⟹ XP_017458668 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
CTTCCTAAGTTCTCCTGGGGCAGGTGCAGGTCGCTCTGCGGACTGCTGCCGTGGCTTCCAAGGChide sequence |
| RefSeq Acc Id: | XR_001838269 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | NON-CODING | |||||||||
| Position: |
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| Sequence: |
GGCCGCCCGGGCTCTCTCTGATGATGCCCCTCAGTTGCCCACACTCGCGCTGTCCGGGGTTGGGhide sequence |
| RefSeq Acc Id: | XR_001843870 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | NON-CODING | |||||||||
| Position: |
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| Sequence: |
CTTCCTAAGTTCTCCTGGGGCAGGTGCAGGTCGCTCTGCGGACTGCTGCCGTGGCTTCCAAGGChide sequence |
Protein Sequences| Protein RefSeqs | XP_006225734 | (Get FASTA) | NCBI Sequence Viewer |
| XP_006225736 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006239787 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017449892 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017449893 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017449894 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017449895 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017458667 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017458668 | (Get FASTA) | NCBI Sequence Viewer | |
| GenBank Protein | EDM02656 | (Get FASTA) | NCBI Sequence Viewer |
Reference Sequences
| RefSeq Acc Id: | XP_006225736 ⟸ XM_006225674 |
| - Peptide Label: | isoform X3 |
| - Sequence: |
MKDTDIKRLLYTNLLCIFSVFLSIFIPSFFLDNFSILETHLVWLGTCSAFVTGANLLLYLVVKPhide sequence |
| RefSeq Acc Id: | XP_006225734 ⟸ XM_006225672 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
MPSHRALVGSRLRRAASQIVTQEDTMKDTDIKRLLYTNLLCIFSVFLSIFIPSFFLDNFSILEThide sequence |
| RefSeq Acc Id: | XP_006239787 ⟸ XM_006239725 |
| - Peptide Label: | isoform X3 |
| - Sequence: |
MKDTDIKRLLYTNLLCIFSVFLSIFIPSFFLDNFSILETHLVWLGTCSAFVTGANLLLYLVVKPhide sequence |
| RefSeq Acc Id: | XP_017458668 ⟸ XM_017603179 |
| - Peptide Label: | isoform X4 |
| - Sequence: |
MPSHRALVGSRLRRAASQIVTQEDTMKDTDIKRLLYTNLLCIFSVFLSIFIPSFFLDNFSILEThide sequence |
| RefSeq Acc Id: | XP_017458667 ⟸ XM_017603178 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
MPSHRALVGSRLRRAASQIVTQEDTMKDTDIKRLLYTNLLCIFSVFLSIFIPSFFLDNFSILEThide sequence |
| RefSeq Acc Id: | XP_017449893 ⟸ XM_017594404 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
MPSHRALVGSRLRRAASQIVTQEDTMKDTDIKRLLYTNLLCIFSVFLSIFIPSFFLDNFSILEThide sequence |
| RefSeq Acc Id: | XP_017449894 ⟸ XM_017594405 |
| - Peptide Label: | isoform X3 |
| - Sequence: |
MKDTDIKRLLYTNLLCIFSVFLSIFIPSFFLDNFSILETHLVWLGTCSAFVTGANLLLYLVVKPhide sequence |
| RefSeq Acc Id: | XP_017449892 ⟸ XM_017594403 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
MPSHRALVGSRLRRAASQIVTQEDTMKDTDIKRLLYTNLLCIFSVFLSIFIPSFFLDNFSILEThide sequence |
| RefSeq Acc Id: | XP_017449895 ⟸ XM_017594406 |
| - Peptide Label: | isoform X4 |
| - Sequence: |
MPSHRALVGSRLRRAASQIVTQEDTMKDTDIKRLLYTNLLCIFSVFLSIFIPSFFLDNFSILEThide sequence |
TranscriptomeStrain Variation
Strain Sequence Variants (Rnor 6.0)
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Additional Information
External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:1584658 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000015325 | ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Protein | ENSRNOP00000020600 | ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Transcript | ENSRNOT00000020600 | ENTREZGENE, UniProtKB/TrEMBL |
| InterPro | GPI_biosynthesis_protein_Pig-F | UniProtKB/TrEMBL |
| NCBI Gene | 681086 | ENTREZGENE |
| Pfam | PIG-F | UniProtKB/TrEMBL |
| PhenoGen | Pigf | PhenoGen |
| UniProt | D3ZZU7_RAT | UniProtKB/TrEMBL |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2012-09-26 | Pigf | phosphatidylinositol glycan anchor biosynthesis, class F | LOC681086 | similar to Phosphatidylinositol-glycan biosynthesis, class F protein (PIG-F) | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2008-01-09 | LOC681086 | similar to Phosphatidylinositol-glycan biosynthesis, class F protein (PIG-F) | LOC681973 | similar to Phosphatidylinositol-glycan biosynthesis, class F protein (PIG-F) | Data Merged | 1643240 | APPROVED |
| 2006-11-19 | LOC681086 | similar to Phosphatidylinositol-glycan biosynthesis, class F protein (PIG-F) | Symbol and Name status set to provisional | 70820 | PROVISIONAL | ||
| 2006-11-19 | LOC681973 | similar to Phosphatidylinositol-glycan biosynthesis, class F protein (PIG-F) | Symbol and Name status set to provisional | 70820 | PROVISIONAL |
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| More on Pigf | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: rn5 rn6 |
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NCBI Genome Data Viewer |
| RGD Object Information | |
| RGD ID: | 1584658 |
| Created: | 2006-11-19 |
| Species: | Rattus norvegicus |
| Last Modified: | 2019-08-20 |
| Status: | ACTIVE |
